FFCP PHASE1:Hg19::chr4:155665927..155665934,+: Difference between revisions
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|id=chr4:155665927..155665934,+
|short_description=p4@LRAT
|description=CAGE_peak_4_at_LRAT_5end
|association_with_transcript=448bp_to_GQ129396,GQ129397,JF432615_5e...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9227 | |EntrezGene=9227 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=6685 | |HGNC=6685 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=448bp_to_GQ129396,GQ129397,JF432615_5end | |||
|cluster_id=chr4:155665927..155665934,+ | |||
|coexpression_cluster_id=C130 | |||
|description=CAGE_peak_4_at_LRAT_5end | |||
|id=chr4:155665927..155665934,+ | |||
|ontology_enrichment_celltype=CL:0002322!1.89e-28!5;CL:0000540!2.32e-09!6;CL:0000031!2.32e-09!6;CL:0000404!2.32e-09!6;CL:0000148!4.75e-09!10;CL:0000541!4.75e-09!10;CL:0000047!4.06e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0002322;3.81e-40;5!CL:0000540;8.40e-34;6!CL:0000404;8.40e-34;6!CL:0002321;6.44e-14;15!CL:0000148;8.64e-10;10!CL:0002231;1.30e-08;3!CL:0002319;4.65e-08;25!CL:0000147;2.99e-07;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,4.98e-40,5;CL:0000540,6.72e-34,6;CL:0000031,6.72e-34,6;CL:0000404,6.72e-34,6;CL:0000047,1.22e-25,8;CL:0000148,9.65e-10,10;CL:0000541,9.65e-10,10;CL:0000133,3.03e-09,59;CL:0002231,1.21e-08,3;CL:0002319,4.43e-08,25;CL:0000221,1.22e-07,72;CL:0000147,3.24e-07,14 | |||
|ontology_enrichment_development_v019=CL:0000031;8.40e-34;6!UBERON:0003056;5.61e-30;3!UBERON:0005425;4.10e-23;1!CL:0000133;7.16e-07;59 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002240!2.95e-08!3;UBERON:0000941!4.43e-07!1;UBERON:0004904!4.43e-07!1;UBERON:0002464!4.43e-07!1;UBERON:0001021!4.43e-07!1;UBERON:0001785!4.43e-07!1;UBERON:0000073!4.93e-07!94;UBERON:0001016!4.93e-07!94 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;4.10e-23;1!UBERON:0001785;4.10e-23;1!UBERON:0002464;4.10e-23;1!UBERON:0004904;4.10e-23;1!UBERON:0001021;4.10e-23;1!UBERON:0003714;2.90e-12;2!UBERON:0005162;2.90e-12;2!UBERON:0000122;2.90e-12;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,5.13e-23,1;UBERON:0001785,5.13e-23,1;UBERON:0002464,5.13e-23,1;UBERON:0004904,5.13e-23,1;UBERON:0001021,5.13e-23,1;UBERON:0003902,5.13e-23,1;UBERON:0005425,5.13e-23,1;UBERON:0000966,1.63e-15,6;UBERON:0005388,1.63e-15,6;UBERON:0001802,1.63e-15,6;UBERON:0003714,3.24e-12,2;UBERON:0005162,3.24e-12,2;UBERON:0000122,3.24e-12,2;UBERON:0001781,9.63e-07,4 | |||
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|short_description=p4@LRAT | |||
}} | }} |
Latest revision as of 07:45, 16 September 2015
Short description: | p4@LRAT |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LRAT_5end |
Coexpression cluster: | C130_iPS_HES3GFP_H9_teratocarcinoma_testicular_colon_Alveolar |
Association with transcript: | 448bp_to_GQ129396, GQ129397, JF432615_5end |
EntrezGene: | LRAT |
HGNC: | 6685 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 4.98e-40 | 5 |
neuron | 6.72e-34 | 6 |
neuroblast | 6.72e-34 | 6 |
electrically signaling cell | 6.72e-34 | 6 |
neuronal stem cell | 1.22e-25 | 8 |
melanocyte | 9.65e-10 | 10 |
melanoblast | 9.65e-10 | 10 |
neurectodermal cell | 3.03e-09 | 59 |
epithelial cell of prostate | 1.21e-08 | 3 |
neural cell | 4.43e-08 | 25 |
ectodermal cell | 1.22e-07 | 72 |
pigment cell | 3.24e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 5.13e-23 | 1 |
cranial nerve | 5.13e-23 | 1 |
nerve trunk | 5.13e-23 | 1 |
nerve connecting eye with brain | 5.13e-23 | 1 |
nerve | 5.13e-23 | 1 |
retinal neural layer | 5.13e-23 | 1 |
presumptive neural retina | 5.13e-23 | 1 |
retina | 1.63e-15 | 6 |
photoreceptor array | 1.63e-15 | 6 |
posterior segment of eyeball | 1.63e-15 | 6 |
neural tissue | 3.24e-12 | 2 |
multi cell component structure | 3.24e-12 | 2 |
neuron projection bundle | 3.24e-12 | 2 |
layer of retina | 9.63e-07 | 4 |