FFCP PHASE1:Hg19::chr5:137514333..137514354,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr5:137514333..137514354,-
|short_description=p2@BRD8
|description=CAGE_peak_2_at_BRD8_5end
|association_with_transcript=3bp_to_ENST00000411594,NM_001164326,NM...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10902 | |EntrezGene=10902 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19874 | |HGNC=19874 | ||
|TSSclassifier=strong | |||
|UniProt=Q9H0E9 | |UniProt=Q9H0E9 | ||
|association_with_transcript=3bp_to_ENST00000411594,NM_001164326,NM_006696,NM_139199,uc003lcf.1,uc003lcg.2,uc003lch.2,uc003lci.2,uc010jes.1,uc011cym.1,uc011cyn.1_5end | |||
|cluster_id=chr5:137514333..137514354,- | |||
|description=CAGE_peak_2_at_BRD8_5end | |||
|id=chr5:137514333..137514354,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!5.55e-21!239;DOID:162!1.34e-20!235;DOID:0050687!1.47e-13!143;DOID:0050686!8.06e-10!137;DOID:305!9.74e-10!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:14566,5.37e-21,239;DOID:162,1.30e-20,235;DOID:0050687,1.43e-13,143;DOID:0050686,7.63e-10,137;DOID:305,1.00e-09,106 | |||
|ontology_enrichment_uberon=UBERON:0000073!1.74e-14!94;UBERON:0001016!1.74e-14!94;UBERON:0001017!4.47e-14!82;UBERON:0001049!5.05e-14!57;UBERON:0005068!5.05e-14!57;UBERON:0006241!5.05e-14!57;UBERON:0007135!5.05e-14!57;UBERON:0005743!8.29e-14!86;UBERON:0000955!8.48e-14!69;UBERON:0006238!8.48e-14!69;UBERON:0002780!6.21e-13!41;UBERON:0001890!6.21e-13!41;UBERON:0006240!6.21e-13!41;UBERON:0003080!2.67e-12!42;UBERON:0002020!4.81e-12!34;UBERON:0003528!4.81e-12!34;UBERON:0001893!5.58e-12!34;UBERON:0001869!8.92e-12!32;UBERON:0002616!1.41e-11!59;UBERON:0002791!1.93e-11!33;UBERON:0002346!5.87e-11!90;UBERON:0003075!2.40e-10!86;UBERON:0007284!2.40e-10!86;UBERON:0002619!9.19e-10!22;UBERON:0001950!3.19e-09!20;UBERON:0000956!3.40e-09!25;UBERON:0000203!3.40e-09!25;UBERON:0007023!1.91e-08!115;UBERON:0003056!1.97e-08!61;UBERON:0000924!4.49e-08!173;UBERON:0006601!4.49e-08!173;UBERON:0000153!6.08e-08!129;UBERON:0007811!6.08e-08!129;UBERON:0004121!1.43e-07!169;UBERON:0000033!1.45e-07!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;1.19e-10;34!UBERON:0001869;1.71e-10;32!UBERON:0003528;1.99e-10;34!UBERON:0002020;1.99e-10;34!UBERON:0002791;4.35e-10;32!UBERON:0002780;1.12e-09;41!UBERON:0001890;1.12e-09;41!UBERON:0002619;1.28e-09;22!UBERON:0001950;4.12e-09;20!UBERON:0000956;4.75e-09;25!UBERON:0000203;4.75e-09;25!UBERON:0000073;5.45e-09;53!UBERON:0002616;5.45e-09;53!UBERON:0001016;4.72e-07;83!UBERON:0000955;7.81e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.80e-15,89;UBERON:0000073,9.09e-15,53;UBERON:0002616,9.09e-15,53;UBERON:0001049,1.40e-14,56;UBERON:0005068,1.40e-14,56;UBERON:0006241,1.40e-14,56;UBERON:0007135,1.40e-14,56;UBERON:0001017,1.65e-14,81;UBERON:0000955,2.82e-14,68;UBERON:0006238,2.82e-14,68;UBERON:0002780,6.14e-13,41;UBERON:0001890,6.14e-13,41;UBERON:0003080,6.14e-13,41;UBERON:0006240,6.14e-13,41;UBERON:0003528,4.76e-12,34;UBERON:0002020,4.76e-12,34;UBERON:0001893,5.53e-12,34;UBERON:0001869,8.83e-12,32;UBERON:0002791,3.90e-11,32;UBERON:0002619,9.12e-10,22;UBERON:0002346,1.15e-09,86;UBERON:0001950,3.16e-09,20;UBERON:0000956,3.38e-09,25;UBERON:0000203,3.38e-09,25;UBERON:0003075,4.52e-09,82;UBERON:0007284,4.52e-09,82;UBERON:0011216,1.42e-08,223;UBERON:0003056,2.85e-08,61;UBERON:0007023,4.27e-08,114;UBERON:0010371,1.26e-07,104;UBERON:0004121,1.54e-07,171;UBERON:0000924,1.54e-07,171;UBERON:0006601,1.54e-07,171 | |||
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| ||
|short_description=p2@BRD8 | |||
}} | }} |
Latest revision as of 21:52, 24 September 2015
Short description: | p2@BRD8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_BRD8_5end |
Coexpression cluster: | NA |
Association with transcript: | 3bp_to_ENST00000411594, NM_001164326, NM_006696, NM_139199, uc003lcf.1, uc003lcg.2, uc003lch.2, uc003lci.2, uc010jes.1, uc011cym.1, uc011cyn.1_5end |
EntrezGene: | BRD8 |
HGNC: | 19874 |
UniProt: | Q9H0E9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nervous system | 3.80e-15 | 89 |
regional part of nervous system | 9.09e-15 | 53 |
regional part of brain | 9.09e-15 | 53 |
neural tube | 1.40e-14 | 56 |
neural rod | 1.40e-14 | 56 |
future spinal cord | 1.40e-14 | 56 |
neural keel | 1.40e-14 | 56 |
central nervous system | 1.65e-14 | 81 |
brain | 2.82e-14 | 68 |
future brain | 2.82e-14 | 68 |
regional part of forebrain | 6.14e-13 | 41 |
forebrain | 6.14e-13 | 41 |
anterior neural tube | 6.14e-13 | 41 |
future forebrain | 6.14e-13 | 41 |
brain grey matter | 4.76e-12 | 34 |
gray matter | 4.76e-12 | 34 |
telencephalon | 5.53e-12 | 34 |
cerebral hemisphere | 8.83e-12 | 32 |
regional part of telencephalon | 3.90e-11 | 32 |
regional part of cerebral cortex | 9.12e-10 | 22 |
neurectoderm | 1.15e-09 | 86 |
neocortex | 3.16e-09 | 20 |
cerebral cortex | 3.38e-09 | 25 |
pallium | 3.38e-09 | 25 |
neural plate | 4.52e-09 | 82 |
presumptive neural plate | 4.52e-09 | 82 |
organ system subdivision | 1.42e-08 | 223 |
pre-chordal neural plate | 2.85e-08 | 61 |
adult organism | 4.27e-08 | 114 |
ecto-epithelium | 1.26e-07 | 104 |
ectoderm-derived structure | 1.54e-07 | 171 |
ectoderm | 1.54e-07 | 171 |
presumptive ectoderm | 1.54e-07 | 171 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 5.37e-21 | 239 |
cancer | 1.30e-20 | 235 |
cell type cancer | 1.43e-13 | 143 |
organ system cancer | 7.63e-10 | 137 |
carcinoma | 1.00e-09 | 106 |