FFCP PHASE1:Hg19::chr5:44809814..44809828,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr5:44809814..44809828,+
|short_description=p7@MRPS30
|description=CAGE_peak_7_at_MRPS30_5end
|association_with_transcript=-116bp_to_ENST00000515647,uc003joi.1...") |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10884 | |EntrezGene=10884 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8769 | |HGNC=8769 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-116bp_to_ENST00000515647,uc003joi.1_5end | |||
|cluster_id=chr5:44809814..44809828,+ | |||
|coexpression_cluster_id=C38 | |||
|description=CAGE_peak_7_at_MRPS30_5end | |||
|id=chr5:44809814..44809828,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000138;1.22e-09;6!CL:0000153;7.48e-07;9!CL:0000447;7.48e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000058,1.22e-09,6;CL:0000138,1.22e-09,6;CL:0000153,7.48e-07,9;CL:0000447,7.48e-07,9 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1909!9.61e-07!2 | |||
|ontology_enrichment_disease_v019=DOID:3371;1.46e-50;1!DOID:4549;1.46e-50;1!DOID:5861;1.46e-50;1!DOID:6496;1.46e-50;1!DOID:201;1.22e-09;6!DOID:0060100;1.22e-09;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,1.46e-50,1;DOID:4549,1.46e-50,1;DOID:5861,1.46e-50,1;DOID:6496,1.46e-50,1;DOID:201,1.22e-09,6;DOID:0060100,1.22e-09,6 | |||
|ontology_enrichment_uberon=UBERON:0001869!2.77e-33!32;UBERON:0001893!4.92e-31!34;UBERON:0002020!9.53e-31!34;UBERON:0003528!9.53e-31!34;UBERON:0002791!8.04e-29!33;UBERON:0002780!7.33e-25!41;UBERON:0001890!7.33e-25!41;UBERON:0006240!7.33e-25!41;UBERON:0002619!1.15e-24!22;UBERON:0000956!2.54e-24!25;UBERON:0000203!2.54e-24!25;UBERON:0003080!3.82e-24!42;UBERON:0001950!6.54e-24!20;UBERON:0001017!1.42e-20!82;UBERON:0000955!3.78e-20!69;UBERON:0006238!3.78e-20!69;UBERON:0001049!7.20e-20!57;UBERON:0005068!7.20e-20!57;UBERON:0006241!7.20e-20!57;UBERON:0007135!7.20e-20!57;UBERON:0005743!2.81e-19!86;UBERON:0002616!5.38e-19!59;UBERON:0000073!4.05e-18!94;UBERON:0001016!4.05e-18!94;UBERON:0000200!1.66e-17!6;UBERON:0003056!1.54e-16!61;UBERON:0000924!6.16e-16!173;UBERON:0006601!6.16e-16!173;UBERON:0000033!1.13e-15!123;UBERON:0004121!1.86e-15!169;UBERON:0000153!1.47e-14!129;UBERON:0007811!1.47e-14!129;UBERON:0002346!5.67e-14!90;UBERON:0003075!1.45e-13!86;UBERON:0007284!1.45e-13!86;UBERON:0001871!1.64e-12!7;UBERON:0000369!2.58e-12!4;UBERON:0002435!2.58e-12!4;UBERON:0000204!2.58e-12!4;UBERON:0010082!2.58e-12!4;UBERON:0002420!2.52e-11!9;UBERON:0007245!2.52e-11!9;UBERON:0010009!2.52e-11!9;UBERON:0010011!2.52e-11!9;UBERON:0000454!2.52e-11!9;UBERON:0007023!9.89e-11!115;UBERON:0005383!1.30e-09!3;UBERON:0005382!1.30e-09!3;UBERON:0000349!2.23e-09!5;UBERON:0002771!2.71e-09!3;UBERON:0002308!7.07e-08!9;UBERON:0000125!7.07e-08!9;UBERON:0001870!2.84e-07!2;UBERON:0000064!4.39e-07!219;UBERON:0009663!5.28e-07!7;UBERON:0001873!5.91e-07!2;UBERON:0010122!5.91e-07!2;UBERON:0001876!9.08e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0000200;9.87e-34;6!UBERON:0002771;7.14e-26;2!UBERON:0002702;7.14e-26;2!UBERON:0001950;5.49e-22;20!UBERON:0002619;3.62e-20;22!UBERON:0000956;5.83e-18;25!UBERON:0000203;5.83e-18;25!UBERON:0002418;6.76e-18;3!UBERON:0004755;6.76e-18;3!UBERON:0001870;9.45e-18;3!UBERON:0002791;6.78e-15;32!UBERON:0001869;6.78e-15;32!UBERON:0001893;4.34e-14;34!UBERON:0003528;2.77e-13;34!UBERON:0002020;2.77e-13;34!UBERON:0002021;3.26e-11;5!UBERON:0001871;2.18e-08;6!UBERON:0002780;4.00e-08;41!UBERON:0001890;4.00e-08;41!UBERON:0000955;3.95e-07;68!UBERON:0000073;6.10e-07;53!UBERON:0002616;6.10e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000200,9.87e-34,6;UBERON:0002702,5.56e-26,2;UBERON:0002771,9.18e-26,2;UBERON:0001950,5.49e-22,20;UBERON:0002619,3.62e-20,22;UBERON:0000956,5.83e-18,25;UBERON:0000203,5.83e-18,25;UBERON:0002418,6.76e-18,3;UBERON:0004755,6.76e-18,3;UBERON:0001870,8.00e-18,3;UBERON:0002791,2.31e-14,32;UBERON:0001869,2.31e-14,32;UBERON:0003528,1.35e-13,34;UBERON:0002020,1.35e-13,34;UBERON:0001893,1.35e-13,34;UBERON:0002780,1.73e-11,41;UBERON:0001890,1.73e-11,41;UBERON:0003080,1.73e-11,41;UBERON:0006240,1.73e-11,41;UBERON:0002021,3.26e-11,5;UBERON:0000073,3.93e-09,53;UBERON:0002616,3.93e-09,53;UBERON:0001049,1.07e-08,56;UBERON:0005068,1.07e-08,56;UBERON:0006241,1.07e-08,56;UBERON:0007135,1.07e-08,56;UBERON:0001871,2.35e-08,6;UBERON:0003056,4.61e-08,61;UBERON:0000955,3.10e-07,68;UBERON:0006238,3.10e-07,68 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.337169380156203,0.241011029883482,0,0,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215627574859517,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0.219259876645935,0,0,0,0,0,0,0.082509499920588,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0.23874448473769,0,0,0.994147647766298,0.140669416410513,0,0,0,0,0,0,0,0.123084805461069,0,0,0,0,0,0,0,0.969332746095218,0.278304294485554,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.241192877250816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.751617097072463,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0.146178634172371,0.0821154570532092,0,4.14803795450051,0,0,0,0.443175571691151,0,0,0,0,0,0,0,0.14405479798815,0,0,0.135904206073614,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0,0,0.0674035438541849,0,0,0,0.136203406111576,0.160753148465019,0.137539436597234,0,0,0,0.303747783290123,0,0,0,0,0.179287339332845,0,0,0,0.25426853765475,0,0,0,0,0.246277562248017,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.628216385000937,1.77213635993397,1.09823638411767,0.1251909307065,0,0,0,0,0,0.151649117541648,0.570930667089935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0.247871528518004,0,0,0,0,0.352675943690684,0,0.385375350578757,1.41696576325585,0,0,0,0.0691572524642179,0,0,0.0981477185010256,0,0.183428598521679,0.231051332300676,0,0,0,0,0,0,0,0,0,0.405225507710368,0,0.206686796501184,0.380494861163441,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0.328863867814245,0,0,0,0.314231179832004,0,0,0,0,0,0,0.116241425368125,0,0,0,0,0,0,0.118332000730565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271965960763659,0,0,0,0,0,0,0,0,0,0,0,0.250707539292375,0.0757786982182394,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.337169380156203,0.241011029883482,0,0,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215627574859517,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0.219259876645935,0,0,0,0,0,0,0.082509499920588,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0.23874448473769,0,0,0.994147647766298,0.140669416410513,0,0,0,0,0,0,0,0.123084805461069,0,0,0,0,0,0,0,0.969332746095218,0.278304294485554,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.241192877250816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.751617097072463,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0.146178634172371,0.0821154570532092,0,4.14803795450051,0,0,0,0.443175571691151,0,0,0,0,0,0,0,0.14405479798815,0,0,0.135904206073614,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0,0,0.0674035438541849,0,0,0,0.136203406111576,0.160753148465019,0.137539436597234,0,0,0,0.303747783290123,0,0,0,0,0.179287339332845,0,0,0,0.25426853765475,0,0,0,0,0.246277562248017,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.628216385000937,1.77213635993397,1.09823638411767,0.1251909307065,0,0,0,0,0,0.151649117541648,0.570930667089935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0.247871528518004,0,0,0,0,0.352675943690684,0,0.385375350578757,1.41696576325585,0,0,0,0.0691572524642179,0,0,0.0981477185010256,0,0.183428598521679,0.231051332300676,0,0,0,0,0,0,0,0,0,0.405225507710368,0,0.206686796501184,0.380494861163441,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0.328863867814245,0,0,0,0.314231179832004,0,0,0,0,0,0,0.116241425368125,0,0,0,0,0,0,0.118332000730565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271965960763659,0,0,0,0,0,0,0,0,0,0,0,0.250707539292375,0.0757786982182394,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p7@MRPS30 | |||
}} | }} |
Latest revision as of 01:12, 18 September 2015
Short description: | p7@MRPS30 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_MRPS30_5end |
Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
Association with transcript: | -116bp_to_ENST00000515647, uc003joi.1_5end |
EntrezGene: | MRPS30 |
HGNC: | 8769 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chondroblast | 1.22e-09 | 6 |
chondrocyte | 1.22e-09 | 6 |
GAG secreting cell | 7.48e-07 | 9 |
carbohydrate secreting cell | 7.48e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
gyrus | 9.87e-34 | 6 |
middle frontal gyrus | 5.56e-26 | 2 |
middle temporal gyrus | 9.18e-26 | 2 |
neocortex | 5.49e-22 | 20 |
regional part of cerebral cortex | 3.62e-20 | 22 |
cerebral cortex | 5.83e-18 | 25 |
pallium | 5.83e-18 | 25 |
cartilage tissue | 6.76e-18 | 3 |
skeletal tissue | 6.76e-18 | 3 |
frontal cortex | 8.00e-18 | 3 |
regional part of telencephalon | 2.31e-14 | 32 |
cerebral hemisphere | 2.31e-14 | 32 |
brain grey matter | 1.35e-13 | 34 |
gray matter | 1.35e-13 | 34 |
telencephalon | 1.35e-13 | 34 |
regional part of forebrain | 1.73e-11 | 41 |
forebrain | 1.73e-11 | 41 |
anterior neural tube | 1.73e-11 | 41 |
future forebrain | 1.73e-11 | 41 |
occipital lobe | 3.26e-11 | 5 |
regional part of nervous system | 3.93e-09 | 53 |
regional part of brain | 3.93e-09 | 53 |
neural tube | 1.07e-08 | 56 |
neural rod | 1.07e-08 | 56 |
future spinal cord | 1.07e-08 | 56 |
neural keel | 1.07e-08 | 56 |
temporal lobe | 2.35e-08 | 6 |
pre-chordal neural plate | 4.61e-08 | 61 |
brain | 3.10e-07 | 68 |
future brain | 3.10e-07 | 68 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 1.46e-50 | 1 |
extraosseous chondrosarcoma | 1.46e-50 | 1 |
myxoid chondrosarcoma | 1.46e-50 | 1 |
extraskeletal myxoid chondrosarcoma | 1.46e-50 | 1 |
connective tissue cancer | 1.22e-09 | 6 |
musculoskeletal system cancer | 1.22e-09 | 6 |