FF:11865-125B2: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00004927 | |||
|accession_numbers=CAGE;DRX008159;DRR009031;DRZ000456;DRZ001841;DRZ011806;DRZ013191 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057 | ||
Line 7: | Line 9: | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.48!3045.16!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.89!777.94!SPI1;;chr7:115670804..115670825,-!p1@TFEC!2.76!579.37!TFEC;;chr16:85932760..85932775,+!p1@IRF8!2.42!262.74!IRF8;;chr12:54778471..54778528,-!p1@ZNF385A!2.31!200.99!ZNF385A;;chr20:39317868..39317884,-!p1@MAFB!2.20!1744.16!MAFB;;chr11:47400062..47400077,-!p2@SPI1!2.18!149.53!SPI1;;chr14:35872453..35872485,-!p2@NFKBIA!2.15!332.97!NFKBIA;;chr3:101546827..101546847,+!p2@NFKBIZ!2.13!184.65!NFKBIZ;;chr11:47399947..47399961,-!p3@SPI1!2.11!128.95!SPI1;;chr2:192015701..192015743,-!p1@STAT4!2.10!167.70!STAT4;;chr6:126240380..126240430,+!p2@NCOA7!2.01!254.87!NCOA7;;chr10:51572408..51572454,+!p3@NCOA4!1.99!537.59!NCOA4;;chr2:70142232..70142251,+!p1@MXD1!1.99!517.01!MXD1;;chr12:72056800..72056834,+!p1@THAP2!1.99!128.34!THAP2;;chr12:72056749..72056767,+!p6@THAP2!1.98!103.52!THAP2;;chr14:35873947..35873965,-!p1@NFKBIA!1.96!5355.97!NFKBIA;;chr21:34442439..34442455,+!p1@OLIG1!1.94!86.57!OLIG1;;chr10:104155659..104155676,+!p4@NFKB2!1.90!96.86!NFKB2;;chr19:50432132..50432217,+!p2@ATF5!1.86!84.76!ATF5;;chr11:615942..615957,-!p1@IRF7!1.84!612.06!IRF7;;chr10:104155480..104155534,+!p2@NFKB2!1.83!408.04!NFKB2;;chr11:65430554..65430579,-!p3@RELA!1.83!162.85!RELA;;chr11:47400032..47400043,-!p5@SPI1!1.82!65.38!SPI1;;chr12:72056773..72056796,+!p3@THAP2!1.80!79.91!THAP2;;chr3:101568349..101568365,+!p1@NFKBIZ!1.79!2945.27!NFKBIZ;;chr4:103422499..103422632,+!p1@NFKB1!1.79!1180.53!NFKB1;;chr2:145275162..145275202,-!p2@ZEB2!1.79!337.21!ZEB2;;chr11:47399996..47400014,-!p4@SPI1!1.79!60.54!SPI1;;chr1:38325227..38325246,-!p2@MTF1!1.78!79.31!MTF1;;chr21:30673091..30673135,+!p7@BACH1!1.78!59.93!BACH1;;chr7:50344289..50344323,+!p1@IKZF1!1.78!59.93!IKZF1;;chr1:37940170..37940190,+!p1@ZC3H12A!1.76!650.80!ZC3H12A;;chr2:145277640..145277771,-!p1@ZEB2!1.73!670.78!ZEB2;;chr2:61108695..61108753,+!p1@REL!1.73!346.89!REL;;chr10:31288398..31288455,-!p2@ZNF438!1.71!58.72!ZNF438;;chr2:68592394..68592405,+!p2@PLEK!1.70!49.04!PLEK;;chr10:35484053..35484076,+!p1@CREM!1.69!115.63!CREM;;chr9:102584262..102584276,+!p1@NR4A3!1.69!102.92!NR4A3;;chr6:126240442..126240459,+!p4@NCOA7!1.68!58.72!NCOA7;;chr21:30671690..30671762,+!p2@BACH1!1.67!149.53!BACH1;;chr8:123793988..123794016,+!p1@ZHX2!1.67!78.70!ZHX2;;chr6:144385698..144385742,-!p2@PLAGL1!1.64!50.85!PLAGL1;;chr10:104154246..104154347,+!p3@NFKB2!1.63!242.16!NFKB2;;chr6:106534192..106534224,+!p1@PRDM1!1.63!114.42!PRDM1;;chr10:51572339..51572376,+!p4@NCOA4!1.63!92.02!NCOA4;;chr4:81104895..81104920,+!p2@PRDM8!1.62!59.93!PRDM8;;chr11:65430535..65430549,-!p4@RELA!1.62!47.22!RELA;;chr18:77155922..77155939,+!p1@NFATC1!1.61!105.34!NFATC1;;chr9:102584128..102584144,+!p3@NR4A3!1.58!68.41!NR4A3;;chr11:615570..615721,-!p2@IRF7!1.56!68.41!IRF7;;chr6:126240463..126240489,+!p6@NCOA7!1.56!39.35!NCOA7;;chr2:231090471..231090504,+!p2@SP140!1.56!35.72!SP140;;chrX:153305787..153305807,-!p3@MECP2!1.56!35.72!MECP2;;chr16:31885093..31885165,+!p1@ZNF267!1.54!492.80!ZNF267;;chr1:157108130..157108173,-!p1@ETV3!1.54!234.90!ETV3;;chr6:12012170..12012245,+!p1@HIVEP1!1.54!161.04!HIVEP1;;chr1:221052776..221052799,+!p1@HLX!1.54!59.33!HLX;;chr2:231084639..231084654,-!p2@SP110!1.54!54.49!SP110;;chr14:35872926..35872951,-!p4@NFKBIA!1.54!46.62!NFKBIA;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.54!33.90!ZBED1;;chr5:131826457..131826514,-!p1@IRF1!1.53!1223.51!IRF1;;chr21:30671235..30671253,+!p1@BACH1!1.52!391.69!BACH1;;chr14:35872494..35872511,-!p5@NFKBIA!1.52!42.38!NFKBIA;;chr10:64018918..64018936,+!p2@ZNF365!1.51!31.48!ZNF365;;chr2:68615063..68615089,+!p4@PLEK!1.51!31.48!PLEK;;chr6:44233252..44233296,-!p1@NFKBIE!1.50!289.99!NFKBIE;;chr9:102584159..102584174,+!p2@NR4A3!1.49!53.28!NR4A3;;chr2:145277882..145277967,-!p3@ZEB2!1.49!50.25!ZEB2;;chr2:231090433..231090469,+!p1@SP140!1.49!29.66!SP140;;chr11:47400045..47400060,-!p6@SPI1!1.49!29.66!SPI1;;chr11:65430586..65430593,-!p5@RELA!1.48!32.69!RELA;;chr2:122042770..122042785,-!p1@TFCP2L1!1.48!29.06!TFCP2L1;;chr22:38597987..38598021,+!p2@MAFF!1.47!166.48!MAFF;;chr19:45252008..45252024,+!p2@BCL3!1.46!88.99!BCL3;;chr14:35872962..35873025,-!p3@NFKBIA!1.46!69.02!NFKBIA;;chr11:64764435..64764449,-!p1@BATF2!1.46!38.14!BATF2;;chr11:47399920..47399931,-!p7@SPI1!1.45!27.24!SPI1;;chr6:15246200..15246214,+!p2@JARID2!1.44!72.04!JARID2;;chr5:142782823..142782854,-!p3@NR3C1!1.44!37.53!NR3C1;;chr17:40440225..40440268,+!p3@STAT5A!1.44!33.90!STAT5A;;chr10:31288370..31288393,-!p3@ZNF438!1.44!26.64!ZNF438;;chr11:34642612..34642646,+!p1@EHF!1.44!26.64!EHF;;chr1:212782094..212782109,+!p1@ATF3!1.43!671.39!ATF3;;chr14:35872542..35872553,-!p10@NFKBIA!1.43!26.03!NFKBIA;;chr4:81104985..81105005,+!p4@PRDM8!1.42!30.88!PRDM8;;chr19:45971246..45971265,+!p1@FOSB!1.41!442.55!FOSB;;chr19:36391434..36391450,-!p1@NFKBID!1.41!47.83!NFKBID;;chr21:30672433..30672464,+!p6@BACH1!1.41!24.82!BACH1;;chr7:115670792..115670797,-!p2@TFEC!1.40!24.22!TFEC;;chrX:129244454..129244488,-!p1@ELF4!1.38!161.04!ELF4;;chr13:41593425..41593480,-!p1@ELF1!1.38!141.66!ELF1;;chr3:39195037..39195069,-!p2@CSRNP1!1.38!137.43!CSRNP1;;chr12:54778351..54778378,-!p6@ZNF385A!1.38!23.01!ZNF385A;;chr9:129567282..129567353,+!p1@ZBTB43!1.37!286.35!ZBTB43;;chr4:81105027..81105039,+!p3@PRDM8!1.37!26.03!PRDM8;;chr14:35872414..35872425,-!p7@NFKBIA!1.37!24.82!NFKBIA;;chr12:72056706..72056717,+!p10@THAP2!1.37!22.40!THAP2;;chr4:81104865..81104886,+!p6@PRDM8!1.36!23.61!PRDM8;;chr19:50432104..50432126,+!p6@ATF5!1.36!21.79!ATF5;;chr2:97202480..97202499,+!p1@ARID5A!1.35!210.07!ARID5A;;chr10:104155680..104155687,+!p6@NFKB2!1.35!21.19!NFKB2;;chr17:40440359..40440386,+!p4@STAT5A!1.35!21.19!STAT5A;;chr7:17338266..17338282,+!p1@AHR!1.34!219.15!AHR;;chr4:103423079..103423112,+!p4@NFKB1!1.33!20.58!NFKB1;;chr21:36260295..36260310,-!p3@RUNX1!1.32!32.09!RUNX1;;chr3:39195139..39195150,-!p3@CSRNP1!1.32!25.43!CSRNP1;;chr6:126240356..126240379,+!p7@NCOA7!1.32!24.22!NCOA7;;chr20:56195474..56195506,-!p1@ZBP1!1.32!19.98!ZBP1;;chr19:46801639..46801699,+!p1@HIF3A!1.31!19.37!HIF3A;;chr6:12011943..12012015,+!p2@HIVEP1!1.30!60.54!HIVEP1;;chr6:391743..391759,+!p1@IRF4!1.30!18.77!IRF4;;chr8:72755203..72755239,-!p10@MSC!1.30!18.77!MSC;;chr3:37217736..37217753,-!p2@LRRFIP2!1.29!76.28!LRRFIP2;;chr6:106534230..106534254,+!p2@PRDM1!1.29!45.40!PRDM1;;chr2:191878812..191878823,-!p2@STAT1!1.29!23.61!STAT1;;chr4:185395633..185395651,-!p2@IRF2!1.28!29.06!IRF2;;chr8:81397820..81397836,+!p2@ZBTB10!1.28!22.40!ZBTB10;;chr2:145275228..145275241,-!p11@ZEB2!1.28!21.79!ZEB2;;chr10:104155455..104155479,+!p1@NFKB2!1.27!248.21!NFKB2;;chr4:106068026..106068084,+!p1@TET2!1.27!153.77!TET2;;chr7:17338324..17338341,+!p3@AHR!1.25!55.70!AHR;;chr1:158979872..158979898,+!p3@IFI16!1.25!51.46!IFI16;;chr1:221052733..221052749,+!p2@HLX!1.25!21.79!HLX;;chr21:40177845..40177863,+!p1@ETS2!1.24!952.29!ETS2;;chr12:11802753..11802834,+!p2@ETV6!1.24!78.70!ETV6;;chr2:68615031..68615055,+!p3@PLEK!1.24!16.35!PLEK;;chr10:3827371..3827386,-!p2@KLF6!1.23!132.58!KLF6;;chr7:106809470..106809481,+!p2@HBP1!1.23!22.40!HBP1;;chr10:64576105..64576133,-!p1@EGR2!1.22!31.48!EGR2;;chr2:70167296..70167306,+!p3@MXD1!1.22!23.61!MXD1;;chr4:81104958..81104981,+!p5@PRDM8!1.22!18.16!PRDM8;;chr2:191885737..191885750,-!p4@STAT1!1.22!15.74!STAT1;;chr9:102584278..102584285,+!p5@NR4A3!1.22!15.74!NR4A3;;chr1:221054853..221054873,+!p9@HLX!1.21!15.13!HLX;;chr1:37947257..37947292,+!p4@ZC3H12A!1.21!15.13!ZC3H12A;;chr1:120190786..120190915,-!p1@ZNF697!1.20!107.16!ZNF697;;chr3:12329397..12329433,+!p2@PPARG!1.20!33.30!PPARG;;chr8:72756063..72756125,-!p1@MSC!1.20!30.27!MSC;;chr8:72756267..72756296,-!p4@MSC!1.20!21.79!MSC;;chr1:25256756..25256774,-!p1@RUNX3!1.19!27.24!RUNX3;;chrX:153305741..153305753,-!p4@MECP2!1.19!14.53!MECP2;;chr7:128577972..128578047,+!p1@IRF5!1.18!22.40!IRF5;;chr2:61108771..61108789,+!p4@REL!1.18!21.19!REL;;chr2:28618532..28618610,+!p4@FOSL2!1.17!23.61!FOSL2;;chr6:34524093..34524135,-!p1@SPDEF!1.17!13.92!SPDEF;;chr8:22550982..22550999,-!p1@EGR3!1.16!38.14!EGR3;;chr12:54785074..54785122,-!p2@ZNF385A!1.16!20.58!ZNF385A;;chrX:24167086..24167111,+!p4@ZFX!1.16!13.32!ZFX;;chrX:153305962..153305995,-!p5@MECP2!1.16!13.32!MECP2;;chr21:34442540..34442560,+!p2@OLIG1!1.16!13.32!OLIG1;;chr6:143266297..143266356,-!p1@HIVEP2!1.15!62.36!HIVEP2;;chr6:12012249..12012266,+!p5@HIVEP1!1.15!23.01!HIVEP1;;chr4:185395590..185395627,-!p3@IRF2!1.15!16.35!IRF2;;chr20:47894569..47894799,-!p1@ZNFX1!1.14!333.58!ZNFX1;;chr6:15246261..15246312,+!p1@JARID2!1.14!305.73!JARID2;;chr21:40177892..40177903,+!p2@ETS2!1.14!50.85!ETS2;;chr10:51575814..51575835,+!p8@NCOA4!1.14!12.71!NCOA4;;chr13:41593392..41593403,-!p7@ELF1!1.14!12.71!ELF1;;chr17:40440177..40440190,+!p6@STAT5A!1.14!12.71!STAT5A;;chr20:48807351..48807384,+!p1@CEBPB!1.13!1276.18!CEBPB;;chr2:231084659..231084721,-!p1@SP110!1.13!290.59!SP110;;chr2:185463247..185463263,+!p1@ZNF804A!1.13!22.40!ZNF804A;;chr9:102584241..102584261,+!p4@NR4A3!1.13!19.37!NR4A3;;chr2:231280954..231280965,+!p2@SP100!1.12!22.40!SP100;;chr8:72756637..72756664,-!p3@MSC!1.12!13.92!MSC;;chr6:36355431..36355466,-!p1@ETV7!1.12!12.11!ETV7;;chr14:75988831..75988847,+!p2@BATF!1.12!12.11!BATF;;chr19:45504688..45504782,+!p1@RELB!1.11!72.04!RELB;;chr18:3449586..3449617,+!p8@TGIF1!1.10!18.77!TGIF1;;chr17:38497662..38497713,+!p4@RARA!1.10!13.32!RARA;;chr8:72755345..72755349,-!p14@MSC!1.10!11.50!MSC;;chr2:192015677..192015691,-!p3@STAT4!1.10!11.50!STAT4;;chr9:110252035..110252057,-!p1@KLF4!1.09!182.83!KLF4;;chr11:113930425..113930471,+!p1@ZBTB16!1.09!16.35!ZBTB16;;chr12:54785054..54785072,-!p4@ZNF385A!1.09!12.71!ZNF385A;;chr7:139762641..139762768,-!p1@PARP12!1.08!149.53!PARP12;;chr3:39195075..39195088,-!p1@CSRNP1!1.08!69.62!CSRNP1;;chr2:208394817..208394834,+!p3@CREB1!1.08!44.80!CREB1;;chr3:187455680..187455700,-!p4@BCL6!1.08!10.90!BCL6;;chr4:103423120..103423142,+!p8@NFKB1!1.08!10.90!NFKB1;;chr19:45251395..45251432,+!p8@BCL3!1.08!10.90!BCL3;;chr10:35484090..35484104,+!p6@CREM!1.08!10.90!CREM;;chr3:170075436..170075520,+!p1@SKIL!1.07!233.08!SKIL;;chr13:41635029..4163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| |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.48!3045.16!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.89!777.94!SPI1;;chr7:115670804..115670825,-!p1@TFEC!2.76!579.37!TFEC;;chr16:85932760..85932775,+!p1@IRF8!2.42!262.74!IRF8;;chr12:54778471..54778528,-!p1@ZNF385A!2.31!200.99!ZNF385A;;chr20:39317868..39317884,-!p1@MAFB!2.20!1744.16!MAFB;;chr11:47400062..47400077,-!p2@SPI1!2.18!149.53!SPI1;;chr14:35872453..35872485,-!p2@NFKBIA!2.15!332.97!NFKBIA;;chr3:101546827..101546847,+!p2@NFKBIZ!2.13!184.65!NFKBIZ;;chr11:47399947..47399961,-!p3@SPI1!2.11!128.95!SPI1;;chr2:192015701..192015743,-!p1@STAT4!2.10!167.70!STAT4;;chr6:126240380..126240430,+!p2@NCOA7!2.01!254.87!NCOA7;;chr10:51572408..51572454,+!p3@NCOA4!1.99!537.59!NCOA4;;chr2:70142232..70142251,+!p1@MXD1!1.99!517.01!MXD1;;chr12:72056800..72056834,+!p1@THAP2!1.99!128.34!THAP2;;chr12:72056749..72056767,+!p6@THAP2!1.98!103.52!THAP2;;chr14:35873947..35873965,-!p1@NFKBIA!1.96!5355.97!NFKBIA;;chr21:34442439..34442455,+!p1@OLIG1!1.94!86.57!OLIG1;;chr10:104155659..104155676,+!p4@NFKB2!1.90!96.86!NFKB2;;chr19:50432132..50432217,+!p2@ATF5!1.86!84.76!ATF5;;chr11:615942..615957,-!p1@IRF7!1.84!612.06!IRF7;;chr10:104155480..104155534,+!p2@NFKB2!1.83!408.04!NFKB2;;chr11:65430554..65430579,-!p3@RELA!1.83!162.85!RELA;;chr11:47400032..47400043,-!p5@SPI1!1.82!65.38!SPI1;;chr12:72056773..72056796,+!p3@THAP2!1.80!79.91!THAP2;;chr3:101568349..101568365,+!p1@NFKBIZ!1.79!2945.27!NFKBIZ;;chr4:103422499..103422632,+!p1@NFKB1!1.79!1180.53!NFKB1;;chr2:145275162..145275202,-!p2@ZEB2!1.79!337.21!ZEB2;;chr11:47399996..47400014,-!p4@SPI1!1.79!60.54!SPI1;;chr1:38325227..38325246,-!p2@MTF1!1.78!79.31!MTF1;;chr21:30673091..30673135,+!p7@BACH1!1.78!59.93!BACH1;;chr7:50344289..50344323,+!p1@IKZF1!1.78!59.93!IKZF1;;chr1:37940170..37940190,+!p1@ZC3H12A!1.76!650.80!ZC3H12A;;chr2:145277640..145277771,-!p1@ZEB2!1.73!670.78!ZEB2;;chr2:61108695..61108753,+!p1@REL!1.73!346.89!REL;;chr10:31288398..31288455,-!p2@ZNF438!1.71!58.72!ZNF438;;chr2:68592394..68592405,+!p2@PLEK!1.70!49.04!PLEK;;chr10:35484053..35484076,+!p1@CREM!1.69!115.63!CREM;;chr9:102584262..102584276,+!p1@NR4A3!1.69!102.92!NR4A3;;chr6:126240442..126240459,+!p4@NCOA7!1.68!58.72!NCOA7;;chr21:30671690..30671762,+!p2@BACH1!1.67!149.53!BACH1;;chr8:123793988..123794016,+!p1@ZHX2!1.67!78.70!ZHX2;;chr6:144385698..144385742,-!p2@PLAGL1!1.64!50.85!PLAGL1;;chr10:104154246..104154347,+!p3@NFKB2!1.63!242.16!NFKB2;;chr6:106534192..106534224,+!p1@PRDM1!1.63!114.42!PRDM1;;chr10:51572339..51572376,+!p4@NCOA4!1.63!92.02!NCOA4;;chr4:81104895..81104920,+!p2@PRDM8!1.62!59.93!PRDM8;;chr11:65430535..65430549,-!p4@RELA!1.62!47.22!RELA;;chr18:77155922..77155939,+!p1@NFATC1!1.61!105.34!NFATC1;;chr9:102584128..102584144,+!p3@NR4A3!1.58!68.41!NR4A3;;chr11:615570..615721,-!p2@IRF7!1.56!68.41!IRF7;;chr6:126240463..126240489,+!p6@NCOA7!1.56!39.35!NCOA7;;chr2:231090471..231090504,+!p2@SP140!1.56!35.72!SP140;;chrX:153305787..153305807,-!p3@MECP2!1.56!35.72!MECP2;;chr16:31885093..31885165,+!p1@ZNF267!1.54!492.80!ZNF267;;chr1:157108130..157108173,-!p1@ETV3!1.54!234.90!ETV3;;chr6:12012170..12012245,+!p1@HIVEP1!1.54!161.04!HIVEP1;;chr1:221052776..221052799,+!p1@HLX!1.54!59.33!HLX;;chr2:231084639..231084654,-!p2@SP110!1.54!54.49!SP110;;chr14:35872926..35872951,-!p4@NFKBIA!1.54!46.62!NFKBIA;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.54!33.90!ZBED1;;chr5:131826457..131826514,-!p1@IRF1!1.53!1223.51!IRF1;;chr21:30671235..30671253,+!p1@BACH1!1.52!391.69!BACH1;;chr14:35872494..35872511,-!p5@NFKBIA!1.52!42.38!NFKBIA;;chr10:64018918..64018936,+!p2@ZNF365!1.51!31.48!ZNF365;;chr2:68615063..68615089,+!p4@PLEK!1.51!31.48!PLEK;;chr6:44233252..44233296,-!p1@NFKBIE!1.50!289.99!NFKBIE;;chr9:102584159..102584174,+!p2@NR4A3!1.49!53.28!NR4A3;;chr2:145277882..145277967,-!p3@ZEB2!1.49!50.25!ZEB2;;chr2:231090433..231090469,+!p1@SP140!1.49!29.66!SP140;;chr11:47400045..47400060,-!p6@SPI1!1.49!29.66!SPI1;;chr11:65430586..65430593,-!p5@RELA!1.48!32.69!RELA;;chr2:122042770..122042785,-!p1@TFCP2L1!1.48!29.06!TFCP2L1;;chr22:38597987..38598021,+!p2@MAFF!1.47!166.48!MAFF;;chr19:45252008..45252024,+!p2@BCL3!1.46!88.99!BCL3;;chr14:35872962..35873025,-!p3@NFKBIA!1.46!69.02!NFKBIA;;chr11:64764435..64764449,-!p1@BATF2!1.46!38.14!BATF2;;chr11:47399920..47399931,-!p7@SPI1!1.45!27.24!SPI1;;chr6:15246200..15246214,+!p2@JARID2!1.44!72.04!JARID2;;chr5:142782823..142782854,-!p3@NR3C1!1.44!37.53!NR3C1;;chr17:40440225..40440268,+!p3@STAT5A!1.44!33.90!STAT5A;;chr10:31288370..31288393,-!p3@ZNF438!1.44!26.64!ZNF438;;chr11:34642612..34642646,+!p1@EHF!1.44!26.64!EHF;;chr1:212782094..212782109,+!p1@ATF3!1.43!671.39!ATF3;;chr14:35872542..35872553,-!p10@NFKBIA!1.43!26.03!NFKBIA;;chr4:81104985..81105005,+!p4@PRDM8!1.42!30.88!PRDM8;;chr19:45971246..45971265,+!p1@FOSB!1.41!442.55!FOSB;;chr19:36391434..36391450,-!p1@NFKBID!1.41!47.83!NFKBID;;chr21:30672433..30672464,+!p6@BACH1!1.41!24.82!BACH1;;chr7:115670792..115670797,-!p2@TFEC!1.40!24.22!TFEC;;chrX:129244454..129244488,-!p1@ELF4!1.38!161.04!ELF4;;chr13:41593425..41593480,-!p1@ELF1!1.38!141.66!ELF1;;chr3:39195037..39195069,-!p2@CSRNP1!1.38!137.43!CSRNP1;;chr12:54778351..54778378,-!p6@ZNF385A!1.38!23.01!ZNF385A;;chr9:129567282..129567353,+!p1@ZBTB43!1.37!286.35!ZBTB43;;chr4:81105027..81105039,+!p3@PRDM8!1.37!26.03!PRDM8;;chr14:35872414..35872425,-!p7@NFKBIA!1.37!24.82!NFKBIA;;chr12:72056706..72056717,+!p10@THAP2!1.37!22.40!THAP2;;chr4:81104865..81104886,+!p6@PRDM8!1.36!23.61!PRDM8;;chr19:50432104..50432126,+!p6@ATF5!1.36!21.79!ATF5;;chr2:97202480..97202499,+!p1@ARID5A!1.35!210.07!ARID5A;;chr10:104155680..104155687,+!p6@NFKB2!1.35!21.19!NFKB2;;chr17:40440359..40440386,+!p4@STAT5A!1.35!21.19!STAT5A;;chr7:17338266..17338282,+!p1@AHR!1.34!219.15!AHR;;chr4:103423079..103423112,+!p4@NFKB1!1.33!20.58!NFKB1;;chr21:36260295..36260310,-!p3@RUNX1!1.32!32.09!RUNX1;;chr3:39195139..39195150,-!p3@CSRNP1!1.32!25.43!CSRNP1;;chr6:126240356..126240379,+!p7@NCOA7!1.32!24.22!NCOA7;;chr20:56195474..56195506,-!p1@ZBP1!1.32!19.98!ZBP1;;chr19:46801639..46801699,+!p1@HIF3A!1.31!19.37!HIF3A;;chr6:12011943..12012015,+!p2@HIVEP1!1.30!60.54!HIVEP1;;chr6:391743..391759,+!p1@IRF4!1.30!18.77!IRF4;;chr8:72755203..72755239,-!p10@MSC!1.30!18.77!MSC;;chr3:37217736..37217753,-!p2@LRRFIP2!1.29!76.28!LRRFIP2;;chr6:106534230..106534254,+!p2@PRDM1!1.29!45.40!PRDM1;;chr2:191878812..191878823,-!p2@STAT1!1.29!23.61!STAT1;;chr4:185395633..185395651,-!p2@IRF2!1.28!29.06!IRF2;;chr8:81397820..81397836,+!p2@ZBTB10!1.28!22.40!ZBTB10;;chr2:145275228..145275241,-!p11@ZEB2!1.28!21.79!ZEB2;;chr10:104155455..104155479,+!p1@NFKB2!1.27!248.21!NFKB2;;chr4:106068026..106068084,+!p1@TET2!1.27!153.77!TET2;;chr7:17338324..17338341,+!p3@AHR!1.25!55.70!AHR;;chr1:158979872..158979898,+!p3@IFI16!1.25!51.46!IFI16;;chr1:221052733..221052749,+!p2@HLX!1.25!21.79!HLX;;chr21:40177845..40177863,+!p1@ETS2!1.24!952.29!ETS2;;chr12:11802753..11802834,+!p2@ETV6!1.24!78.70!ETV6;;chr2:68615031..68615055,+!p3@PLEK!1.24!16.35!PLEK;;chr10:3827371..3827386,-!p2@KLF6!1.23!132.58!KLF6;;chr7:106809470..106809481,+!p2@HBP1!1.23!22.40!HBP1;;chr10:64576105..64576133,-!p1@EGR2!1.22!31.48!EGR2;;chr2:70167296..70167306,+!p3@MXD1!1.22!23.61!MXD1;;chr4:81104958..81104981,+!p5@PRDM8!1.22!18.16!PRDM8;;chr2:191885737..191885750,-!p4@STAT1!1.22!15.74!STAT1;;chr9:102584278..102584285,+!p5@NR4A3!1.22!15.74!NR4A3;;chr1:221054853..221054873,+!p9@HLX!1.21!15.13!HLX;;chr1:37947257..37947292,+!p4@ZC3H12A!1.21!15.13!ZC3H12A;;chr1:120190786..120190915,-!p1@ZNF697!1.20!107.16!ZNF697;;chr3:12329397..12329433,+!p2@PPARG!1.20!33.30!PPARG;;chr8:72756063..72756125,-!p1@MSC!1.20!30.27!MSC;;chr8:72756267..72756296,-!p4@MSC!1.20!21.79!MSC;;chr1:25256756..25256774,-!p1@RUNX3!1.19!27.24!RUNX3;;chrX:153305741..153305753,-!p4@MECP2!1.19!14.53!MECP2;;chr7:128577972..128578047,+!p1@IRF5!1.18!22.40!IRF5;;chr2:61108771..61108789,+!p4@REL!1.18!21.19!REL;;chr2:28618532..28618610,+!p4@FOSL2!1.17!23.61!FOSL2;;chr6:34524093..34524135,-!p1@SPDEF!1.17!13.92!SPDEF;;chr8:22550982..22550999,-!p1@EGR3!1.16!38.14!EGR3;;chr12:54785074..54785122,-!p2@ZNF385A!1.16!20.58!ZNF385A;;chrX:24167086..24167111,+!p4@ZFX!1.16!13.32!ZFX;;chrX:153305962..153305995,-!p5@MECP2!1.16!13.32!MECP2;;chr21:34442540..34442560,+!p2@OLIG1!1.16!13.32!OLIG1;;chr6:143266297..143266356,-!p1@HIVEP2!1.15!62.36!HIVEP2;;chr6:12012249..12012266,+!p5@HIVEP1!1.15!23.01!HIVEP1;;chr4:185395590..185395627,-!p3@IRF2!1.15!16.35!IRF2;;chr20:47894569..47894799,-!p1@ZNFX1!1.14!333.58!ZNFX1;;chr6:15246261..15246312,+!p1@JARID2!1.14!305.73!JARID2;;chr21:40177892..40177903,+!p2@ETS2!1.14!50.85!ETS2;;chr10:51575814..51575835,+!p8@NCOA4!1.14!12.71!NCOA4;;chr13:41593392..41593403,-!p7@ELF1!1.14!12.71!ELF1;;chr17:40440177..40440190,+!p6@STAT5A!1.14!12.71!STAT5A;;chr20:48807351..48807384,+!p1@CEBPB!1.13!1276.18!CEBPB;;chr2:231084659..231084721,-!p1@SP110!1.13!290.59!SP110;;chr2:185463247..185463263,+!p1@ZNF804A!1.13!22.40!ZNF804A;;chr9:102584241..102584261,+!p4@NR4A3!1.13!19.37!NR4A3;;chr2:231280954..231280965,+!p2@SP100!1.12!22.40!SP100;;chr8:72756637..72756664,-!p3@MSC!1.12!13.92!MSC;;chr6:36355431..36355466,-!p1@ETV7!1.12!12.11!ETV7;;chr14:75988831..75988847,+!p2@BATF!1.12!12.11!BATF;;chr19:45504688..45504782,+!p1@RELB!1.11!72.04!RELB;;chr18:3449586..3449617,+!p8@TGIF1!1.10!18.77!TGIF1;;chr17:38497662..38497713,+!p4@RARA!1.10!13.32!RARA;;chr8:72755345..72755349,-!p14@MSC!1.10!11.50!MSC;;chr2:192015677..192015691,-!p3@STAT4!1.10!11.50!STAT4;;chr9:110252035..110252057,-!p1@KLF4!1.09!182.83!KLF4;;chr11:113930425..113930471,+!p1@ZBTB16!1.09!16.35!ZBTB16;;chr12:54785054..54785072,-!p4@ZNF385A!1.09!12.71!ZNF385A;;chr7:139762641..139762768,-!p1@PARP12!1.08!149.53!PARP12;;chr3:39195075..39195088,-!p1@CSRNP1!1.08!69.62!CSRNP1;;chr2:208394817..208394834,+!p3@CREB1!1.08!44.80!CREB1;;chr3:187455680..187455700,-!p4@BCL6!1.08!10.90!BCL6;;chr4:103423120..103423142,+!p8@NFKB1!1.08!10.90!NFKB1;;chr19:45251395..45251432,+!p8@BCL3!1.08!10.90!BCL3;;chr10:35484090..35484104,+!p6@CREM!1.08!10.90!CREM;;chr3:170075436..170075520,+!p1@SKIL!1.07!233.08!SKIL;;chr13:41635029..4163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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405 | |||
|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057 | |ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 38: | Line 42: | ||
|fonse_treatment_closure=EFO:0000369,FF:0000335,FF:0000625,FF:0011108,FF:11865-125B2 | |fonse_treatment_closure=EFO:0000369,FF:0000335,FF:0000625,FF:0011108,FF:11865-125B2 | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520lipopolysaccharide%252c%2520donor1.CNhs13470.11865-125B2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520lipopolysaccharide%252c%2520donor1.CNhs13470.11865-125B2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520lipopolysaccharide%252c%2520donor1.CNhs13470.11865-125B2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520lipopolysaccharide%252c%2520donor1.CNhs13470.11865-125B2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520lipopolysaccharide%252c%2520donor1.CNhs13470.11865-125B2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11865-125B2 | |id=FF:11865-125B2 | ||
|is_a=EFO:0002091;;FF:0011108 | |is_a=EFO:0002091;;FF:0011108 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs13470 | |||
|library_id_phase_based=2:CNhs13470 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11865 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11865 | |||
|name=CD14+ monocytes - treated with lipopolysaccharide, donor1 | |name=CD14+ monocytes - treated with lipopolysaccharide, donor1 | ||
|namespace= | |namespace= | ||
Line 46: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13470,LSID1024,release012,COMPLETED | |profile_hcage=CNhs13470,LSID1024,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 85: | Line 101: | ||
|top_motifs=IRF7:5.94401633276;IRF1,2:4.89048789;CEBPA,B_DDIT3:3.91174936677;NFE2:3.83500484567;FOS_FOS{B,L1}_JUN{B,D}:3.79745570187;HLF:3.76393128558;NFKB1_REL_RELA:3.761821566;NFE2L2:3.70919318803;BACH2:3.40220696504;DMAP1_NCOR{1,2}_SMARC:3.37890953295;FOSL2:3.12444881645;PAX2:2.97671667819;SPIB:2.80167982764;NFIL3:2.68982916851;NFATC1..3:2.6532145788;SPI1:2.59150775004;HMGA1,2:2.39176946178;ETS1,2:2.28579359317;FOXP3:2.27330063751;ATF5_CREB3:2.14596205012;TBP:2.12742340896;RXRA_VDR{dimer}:1.98459484333;STAT2,4,6:1.88027628298;PAX8:1.85744128387;NR1H4:1.84289812245;ALX4:1.82866045344;ATF6:1.82215486007;BPTF:1.68493507791;PAX3,7:1.64439393949;NFE2L1:1.60046801493;RUNX1..3:1.53306271979;ATF4:1.52416454741;FOXN1:1.52256936347;IKZF1:1.47027475423;JUN:1.45441121626;CDX1,2,4:1.44188037768;SREBF1,2:1.41378717287;EP300:1.33240676668;SRF:1.24387322671;ZBTB16:1.22170617268;POU5F1:1.20388969288;PDX1:1.181426929;NANOG{mouse}:1.13193007547;POU2F1..3:1.1292456845;CREB1:1.03856033637;PAX1,9:1.02424983442;PRDM1:1.01688036266;TFCP2:1.00433117305;FOXL1:0.967935246485;FOXO1,3,4:0.967569406902;STAT5{A,B}:0.910201413566;PITX1..3:0.902882015217;ELF1,2,4:0.827476862017;IKZF2:0.737838117447;TGIF1:0.7319899157;XBP1:0.63147139982;ATF2:0.627318821571;PPARG:0.621720088164;HMX1:0.602751223982;GLI1..3:0.568625885907;FOXD3:0.565992464327;HBP1_HMGB_SSRP1_UBTF:0.54945343041;EN1,2:0.504090108191;HSF1,2:0.446074552025;SMAD1..7,9:0.440412398999;TLX2:0.370892423093;DBP:0.349093350113;MAFB:0.326369956808;ALX1:0.27673843393;PAX4:0.233362493943;POU6F1:0.21469456255;RBPJ:0.17470442582;EGR1..3:0.130595714435;OCT4_SOX2{dimer}:0.107497984633;HIF1A:0.0893618236572;FOXM1:0.0623482622216;FOXP1:0.051465714206;POU3F1..4:-0.0163584165661;NR3C1:-0.0772507324799;GATA4:-0.0902879608349;NKX3-1:-0.139102617311;MEF2{A,B,C,D}:-0.162973804679;TFAP4:-0.206565534241;ESR1:-0.241670621872;MZF1:-0.268746236344;MYFfamily:-0.363765573344;RREB1:-0.369806428329;HOXA9_MEIS1:-0.375679027117;REST:-0.419170574812;HOX{A5,B5}:-0.457198004176;MED-1{core}:-0.486684776659;STAT1,3:-0.513353142652;TAL1_TCF{3,4,12}:-0.528505532027;ZNF384:-0.54817805141;ADNP_IRX_SIX_ZHX:-0.559219503857;FOX{D1,D2}:-0.636507313674;NKX2-2,8:-0.661929975493;NKX6-1,2:-0.665894226048;AHR_ARNT_ARNT2:-0.727923756755;TBX4,5:-0.736492288936;NR6A1:-0.766673535963;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.782234987499;HNF4A_NR2F1,2:-0.794807793433;MYB:-0.840357543706;CDC5L:-0.898422618622;SOX2:-0.90191572866;GTF2I:-0.9091911724;MTE{core}:-0.916446223064;SOX{8,9,10}:-0.919430628459;PATZ1:-0.920321810037;HES1:-0.942221631945;RFX2..5_RFXANK_RFXAP:-0.948952483798;ESRRA:-0.951687817432;RXR{A,B,G}:-0.953305933787;ZFP161:-0.985141860117;TEAD1:-0.986352077401;ZBTB6:-0.997230783511;GTF2A1,2:-1.00268031877;SP1:-1.0113822453;XCPE1{core}:-1.01404299839;NHLH1,2:-1.01429573728;TLX1..3_NFIC{dimer}:-1.02068497773;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.022231846;HNF1A:-1.08025855028;FOXA2:-1.10158723592;GCM1,2:-1.10953836229;ZEB1:-1.12629291763;MAZ:-1.12864197979;RORA:-1.1421259168;T:-1.14356160521;NANOG:-1.16133196961;ZNF148:-1.16393434723;VSX1,2:-1.18601796507;SPZ1:-1.2117831323;TFDP1:-1.21954318026;TFAP2{A,C}:-1.23830201465;PRRX1,2:-1.25316869508;SOX5:-1.26989756523;BREu{core}:-1.27067887086;GZF1:-1.2808696218;SNAI1..3:-1.29711037035;E2F1..5:-1.30220584097;NFIX:-1.32699466893;HOX{A4,D4}:-1.34857261963;TFAP2B:-1.40046408834;MTF1:-1.40320354192;NKX2-1,4:-1.41023529256;KLF4:-1.42934813693;FOX{F1,F2,J1}:-1.42988385884;PAX6:-1.4930890341;UFEwm:-1.54596608825;TP53:-1.54632294258;ZIC1..3:-1.59160124424;TOPORS:-1.64076400582;NKX2-3_NKX2-5:-1.64216692391;LMO2:-1.65670496713;HOX{A6,A7,B6,B7}:-1.66923750928;CUX2:-1.71983743892;GATA6:-1.72174780389;HIC1:-1.72652267402;CRX:-1.73642122082;ZNF238:-1.76901767994;NKX3-2:-1.81628267935;MYOD1:-1.82331818909;EBF1:-1.83275796505;POU1F1:-1.90237118644;MYBL2:-1.90848421851;RFX1:-1.90957587516;GFI1B:-1.91294560829;ONECUT1,2:-1.99019480784;AIRE:-2.16877728759;NFY{A,B,C}:-2.26393670274;TEF:-2.32281962045;ZNF423:-2.38053191883;PAX5:-2.38108907319;FOX{I1,J2}:-2.39904857936;ARID5B:-2.59926428203;SOX17:-2.60772849163;FOXQ1:-2.62440537727;bHLH_family:-2.67233247362;GFI1:-2.81531853783;EVI1:-2.8467306527;ELK1,4_GABP{A,B1}:-2.97441065867;YY1:-3.01150336256;PBX1:-3.02479582128;NR5A1,2:-3.03594363912;NRF1:-3.10887999201;LHX3,4:-3.13521611884;AR:-3.2302031286;HAND1,2:-3.43944901363;LEF1_TCF7_TCF7L1,2:-3.49565503555;ZNF143:-3.65177282041 | |top_motifs=IRF7:5.94401633276;IRF1,2:4.89048789;CEBPA,B_DDIT3:3.91174936677;NFE2:3.83500484567;FOS_FOS{B,L1}_JUN{B,D}:3.79745570187;HLF:3.76393128558;NFKB1_REL_RELA:3.761821566;NFE2L2:3.70919318803;BACH2:3.40220696504;DMAP1_NCOR{1,2}_SMARC:3.37890953295;FOSL2:3.12444881645;PAX2:2.97671667819;SPIB:2.80167982764;NFIL3:2.68982916851;NFATC1..3:2.6532145788;SPI1:2.59150775004;HMGA1,2:2.39176946178;ETS1,2:2.28579359317;FOXP3:2.27330063751;ATF5_CREB3:2.14596205012;TBP:2.12742340896;RXRA_VDR{dimer}:1.98459484333;STAT2,4,6:1.88027628298;PAX8:1.85744128387;NR1H4:1.84289812245;ALX4:1.82866045344;ATF6:1.82215486007;BPTF:1.68493507791;PAX3,7:1.64439393949;NFE2L1:1.60046801493;RUNX1..3:1.53306271979;ATF4:1.52416454741;FOXN1:1.52256936347;IKZF1:1.47027475423;JUN:1.45441121626;CDX1,2,4:1.44188037768;SREBF1,2:1.41378717287;EP300:1.33240676668;SRF:1.24387322671;ZBTB16:1.22170617268;POU5F1:1.20388969288;PDX1:1.181426929;NANOG{mouse}:1.13193007547;POU2F1..3:1.1292456845;CREB1:1.03856033637;PAX1,9:1.02424983442;PRDM1:1.01688036266;TFCP2:1.00433117305;FOXL1:0.967935246485;FOXO1,3,4:0.967569406902;STAT5{A,B}:0.910201413566;PITX1..3:0.902882015217;ELF1,2,4:0.827476862017;IKZF2:0.737838117447;TGIF1:0.7319899157;XBP1:0.63147139982;ATF2:0.627318821571;PPARG:0.621720088164;HMX1:0.602751223982;GLI1..3:0.568625885907;FOXD3:0.565992464327;HBP1_HMGB_SSRP1_UBTF:0.54945343041;EN1,2:0.504090108191;HSF1,2:0.446074552025;SMAD1..7,9:0.440412398999;TLX2:0.370892423093;DBP:0.349093350113;MAFB:0.326369956808;ALX1:0.27673843393;PAX4:0.233362493943;POU6F1:0.21469456255;RBPJ:0.17470442582;EGR1..3:0.130595714435;OCT4_SOX2{dimer}:0.107497984633;HIF1A:0.0893618236572;FOXM1:0.0623482622216;FOXP1:0.051465714206;POU3F1..4:-0.0163584165661;NR3C1:-0.0772507324799;GATA4:-0.0902879608349;NKX3-1:-0.139102617311;MEF2{A,B,C,D}:-0.162973804679;TFAP4:-0.206565534241;ESR1:-0.241670621872;MZF1:-0.268746236344;MYFfamily:-0.363765573344;RREB1:-0.369806428329;HOXA9_MEIS1:-0.375679027117;REST:-0.419170574812;HOX{A5,B5}:-0.457198004176;MED-1{core}:-0.486684776659;STAT1,3:-0.513353142652;TAL1_TCF{3,4,12}:-0.528505532027;ZNF384:-0.54817805141;ADNP_IRX_SIX_ZHX:-0.559219503857;FOX{D1,D2}:-0.636507313674;NKX2-2,8:-0.661929975493;NKX6-1,2:-0.665894226048;AHR_ARNT_ARNT2:-0.727923756755;TBX4,5:-0.736492288936;NR6A1:-0.766673535963;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.782234987499;HNF4A_NR2F1,2:-0.794807793433;MYB:-0.840357543706;CDC5L:-0.898422618622;SOX2:-0.90191572866;GTF2I:-0.9091911724;MTE{core}:-0.916446223064;SOX{8,9,10}:-0.919430628459;PATZ1:-0.920321810037;HES1:-0.942221631945;RFX2..5_RFXANK_RFXAP:-0.948952483798;ESRRA:-0.951687817432;RXR{A,B,G}:-0.953305933787;ZFP161:-0.985141860117;TEAD1:-0.986352077401;ZBTB6:-0.997230783511;GTF2A1,2:-1.00268031877;SP1:-1.0113822453;XCPE1{core}:-1.01404299839;NHLH1,2:-1.01429573728;TLX1..3_NFIC{dimer}:-1.02068497773;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.022231846;HNF1A:-1.08025855028;FOXA2:-1.10158723592;GCM1,2:-1.10953836229;ZEB1:-1.12629291763;MAZ:-1.12864197979;RORA:-1.1421259168;T:-1.14356160521;NANOG:-1.16133196961;ZNF148:-1.16393434723;VSX1,2:-1.18601796507;SPZ1:-1.2117831323;TFDP1:-1.21954318026;TFAP2{A,C}:-1.23830201465;PRRX1,2:-1.25316869508;SOX5:-1.26989756523;BREu{core}:-1.27067887086;GZF1:-1.2808696218;SNAI1..3:-1.29711037035;E2F1..5:-1.30220584097;NFIX:-1.32699466893;HOX{A4,D4}:-1.34857261963;TFAP2B:-1.40046408834;MTF1:-1.40320354192;NKX2-1,4:-1.41023529256;KLF4:-1.42934813693;FOX{F1,F2,J1}:-1.42988385884;PAX6:-1.4930890341;UFEwm:-1.54596608825;TP53:-1.54632294258;ZIC1..3:-1.59160124424;TOPORS:-1.64076400582;NKX2-3_NKX2-5:-1.64216692391;LMO2:-1.65670496713;HOX{A6,A7,B6,B7}:-1.66923750928;CUX2:-1.71983743892;GATA6:-1.72174780389;HIC1:-1.72652267402;CRX:-1.73642122082;ZNF238:-1.76901767994;NKX3-2:-1.81628267935;MYOD1:-1.82331818909;EBF1:-1.83275796505;POU1F1:-1.90237118644;MYBL2:-1.90848421851;RFX1:-1.90957587516;GFI1B:-1.91294560829;ONECUT1,2:-1.99019480784;AIRE:-2.16877728759;NFY{A,B,C}:-2.26393670274;TEF:-2.32281962045;ZNF423:-2.38053191883;PAX5:-2.38108907319;FOX{I1,J2}:-2.39904857936;ARID5B:-2.59926428203;SOX17:-2.60772849163;FOXQ1:-2.62440537727;bHLH_family:-2.67233247362;GFI1:-2.81531853783;EVI1:-2.8467306527;ELK1,4_GABP{A,B1}:-2.97441065867;YY1:-3.01150336256;PBX1:-3.02479582128;NR5A1,2:-3.03594363912;NRF1:-3.10887999201;LHX3,4:-3.13521611884;AR:-3.2302031286;HAND1,2:-3.43944901363;LEF1_TCF7_TCF7L1,2:-3.49565503555;ZNF143:-3.65177282041 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11865-125B2;search_select_hide=table117:FF:11865-125B2 | |||
}} | }} |
Latest revision as of 18:24, 4 June 2020
Name: | CD14+ monocytes - treated with lipopolysaccharide, donor1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13470 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13470
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13470
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.12 |
10 | 10 | 0.0435 |
100 | 100 | 0.814 |
101 | 101 | 0.963 |
102 | 102 | 0.947 |
103 | 103 | 0.237 |
104 | 104 | 0.633 |
105 | 105 | 0.179 |
106 | 106 | 1.42232e-4 |
107 | 107 | 0.0542 |
108 | 108 | 0.866 |
109 | 109 | 0.549 |
11 | 11 | 0.127 |
110 | 110 | 0.205 |
111 | 111 | 0.0393 |
112 | 112 | 0.369 |
113 | 113 | 0.173 |
114 | 114 | 0.0307 |
115 | 115 | 0.204 |
116 | 116 | 0.846 |
117 | 117 | 0.187 |
118 | 118 | 0.296 |
119 | 119 | 0.13 |
12 | 12 | 0.28 |
120 | 120 | 0.763 |
121 | 121 | 0.737 |
122 | 122 | 0.877 |
123 | 123 | 0.323 |
124 | 124 | 0.642 |
125 | 125 | 0.133 |
126 | 126 | 0.243 |
127 | 127 | 0.426 |
128 | 128 | 0.0301 |
129 | 129 | 0.55 |
13 | 13 | 0.132 |
130 | 130 | 0.164 |
131 | 131 | 0.789 |
132 | 132 | 0.289 |
133 | 133 | 0.931 |
134 | 134 | 0.353 |
135 | 135 | 0.733 |
136 | 136 | 0.773 |
137 | 137 | 0.0223 |
138 | 138 | 0.413 |
139 | 139 | 0.131 |
14 | 14 | 0.473 |
140 | 140 | 0.305 |
141 | 141 | 0.31 |
142 | 142 | 0.418 |
143 | 143 | 0.0264 |
144 | 144 | 0.649 |
145 | 145 | 0.219 |
146 | 146 | 0.701 |
147 | 147 | 0.948 |
148 | 148 | 0.00647 |
149 | 149 | 0.664 |
15 | 15 | 0.182 |
150 | 150 | 0.348 |
151 | 151 | 0.44 |
152 | 152 | 0.387 |
153 | 153 | 0.494 |
154 | 154 | 0.841 |
155 | 155 | 0.96 |
156 | 156 | 0.944 |
157 | 157 | 0.354 |
158 | 158 | 0.0624 |
159 | 159 | 0.744 |
16 | 16 | 0.291 |
160 | 160 | 0.432 |
161 | 161 | 0.437 |
162 | 162 | 0.542 |
163 | 163 | 0.0583 |
164 | 164 | 0.134 |
165 | 165 | 0.0282 |
166 | 166 | 0.853 |
167 | 167 | 0.257 |
168 | 168 | 0.0726 |
169 | 169 | 0.0133 |
17 | 17 | 0.168 |
18 | 18 | 0.126 |
19 | 19 | 0.359 |
2 | 2 | 0.672 |
20 | 20 | 0.251 |
21 | 21 | 0.744 |
22 | 22 | 0.306 |
23 | 23 | 0.0151 |
24 | 24 | 0.589 |
25 | 25 | 0.573 |
26 | 26 | 0.0682 |
27 | 27 | 0.641 |
28 | 28 | 0.31 |
29 | 29 | 0.342 |
3 | 3 | 0.0941 |
30 | 30 | 0.491 |
31 | 31 | 0.528 |
32 | 32 | 0.888 |
33 | 33 | 0.226 |
34 | 34 | 0.589 |
35 | 35 | 0.121 |
36 | 36 | 0.118 |
37 | 37 | 0.117 |
38 | 38 | 0.344 |
39 | 39 | 0.648 |
4 | 4 | 0.991 |
40 | 40 | 0.312 |
41 | 41 | 0.0441 |
42 | 42 | 0.313 |
43 | 43 | 0.0192 |
44 | 44 | 0.715 |
45 | 45 | 0.584 |
46 | 46 | 0.172 |
47 | 47 | 0.558 |
48 | 48 | 0.471 |
49 | 49 | 0.106 |
5 | 5 | 0.328 |
50 | 50 | 0.948 |
51 | 51 | 0.513 |
52 | 52 | 0.185 |
53 | 53 | 0.438 |
54 | 54 | 0.325 |
55 | 55 | 0.422 |
56 | 56 | 0.566 |
57 | 57 | 0.853 |
58 | 58 | 0.141 |
59 | 59 | 0.174 |
6 | 6 | 0.677 |
60 | 60 | 0.023 |
61 | 61 | 0.758 |
62 | 62 | 0.0781 |
63 | 63 | 0.452 |
64 | 64 | 0.56 |
65 | 65 | 0.135 |
66 | 66 | 0.112 |
67 | 67 | 0.474 |
68 | 68 | 0.656 |
69 | 69 | 0.194 |
7 | 7 | 0.324 |
70 | 70 | 0.0521 |
71 | 71 | 0.0389 |
72 | 72 | 0.148 |
73 | 73 | 0.402 |
74 | 74 | 0.022 |
75 | 75 | 0.294 |
76 | 76 | 0.25 |
77 | 77 | 0.352 |
78 | 78 | 0.106 |
79 | 79 | 0.963 |
8 | 8 | 0.306 |
80 | 80 | 0.222 |
81 | 81 | 0.224 |
82 | 82 | 0.138 |
83 | 83 | 0.0341 |
84 | 84 | 0.0181 |
85 | 85 | 0.00941 |
86 | 86 | 0.107 |
87 | 87 | 0.943 |
88 | 88 | 0.838 |
89 | 89 | 0.174 |
9 | 9 | 0.24 |
90 | 90 | 0.119 |
91 | 91 | 0.254 |
92 | 92 | 0.187 |
93 | 93 | 0.84 |
94 | 94 | 0.086 |
95 | 95 | 0.896 |
96 | 96 | 0.104 |
97 | 97 | 0.547 |
98 | 98 | 0.116 |
99 | 99 | 0.172 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13470
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011108 human CD14-positive monocytes - treated with lipopolysaccharide sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000335 (LPS treatment sample)
0011108 (human CD14-positive monocytes - treated with lipopolysaccharide sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)