FFCP PHASE1:Hg19::chr6:98264504..98264513,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr6:98264504..98264513,+
|short_description=p@chr6:98264504..98264513,+
|description=CAGE_peak_at_chr6:98264504..98264513,+
|association_with_transcript=NA
|E...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr6:98264504..98264513,+ | |||
|coexpression_cluster_id=C10 | |||
|description=CAGE_peak_at_chr6:98264504..98264513,+ | |||
|id=chr6:98264504..98264513,+ | |||
|ontology_enrichment_celltype=CL:0000047!1.55e-25!8;CL:0002605!8.75e-25!3;CL:0002319!3.00e-18!25;CL:0000540!6.64e-13!6;CL:0000031!6.64e-13!6;CL:0000404!6.64e-13!6;CL:0000128!5.88e-11!7;CL:0000126!5.88e-11!7;CL:0000127!5.88e-11!7;CL:0002453!5.88e-11!7;CL:0000133!1.76e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000047;7.48e-37;2!CL:0002319;4.55e-32;25!CL:0000540;2.77e-27;6!CL:0000404;2.77e-27;6!CL:0002605;7.46e-25;3!CL:0000128;3.06e-11;7!CL:0000126;3.06e-11;7!CL:0000127;3.06e-11;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,1.12e-55,8;CL:0002319,4.55e-32,25;CL:0000540,2.12e-27,6;CL:0000031,2.12e-27,6;CL:0000404,2.12e-27,6;CL:0002605,8.95e-25,3;CL:0000133,4.43e-14,59;CL:0000221,1.49e-11,72;CL:0000128,3.30e-11,7;CL:0000126,3.30e-11,7;CL:0000127,3.30e-11,7;CL:0002453,3.30e-11,7 | |||
|ontology_enrichment_development_v019=CL:0000031;2.77e-27;6!CL:0000133;3.55e-11;59 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001869!1.48e-58!32;UBERON:0000956!2.40e-57!25;UBERON:0000203!2.40e-57!25;UBERON:0002791!9.34e-57!33;UBERON:0002020!4.67e-55!34;UBERON:0003528!4.67e-55!34;UBERON:0001893!4.67e-55!34;UBERON:0002780!1.98e-45!41;UBERON:0001890!1.98e-45!41;UBERON:0006240!1.98e-45!41;UBERON:0005743!2.05e-44!86;UBERON:0003080!2.62e-44!42;UBERON:0001950!7.93e-44!20;UBERON:0001017!1.79e-42!82;UBERON:0000073!5.75e-40!94;UBERON:0001016!5.75e-40!94;UBERON:0002619!7.22e-40!22;UBERON:0003056!5.95e-34!61;UBERON:0001049!3.91e-32!57;UBERON:0005068!3.91e-32!57;UBERON:0006241!3.91e-32!57;UBERON:0007135!3.91e-32!57;UBERON:0002616!5.70e-31!59;UBERON:0000955!2.78e-29!69;UBERON:0006238!2.78e-29!69;UBERON:0002021!7.55e-26!5;UBERON:0003075!2.43e-23!86;UBERON:0007284!2.43e-23!86;UBERON:0002346!3.50e-22!90;UBERON:0004121!5.83e-21!169;UBERON:0000924!2.12e-20!173;UBERON:0006601!2.12e-20!173;UBERON:0000033!2.05e-17!123;UBERON:0000153!1.80e-16!129;UBERON:0007811!1.80e-16!129;UBERON:0001872!7.50e-15!5;UBERON:0002022!3.00e-09!1;UBERON:0002902!3.53e-09!1;UBERON:0009899!3.53e-09!1;UBERON:0002581!4.87e-09!1;UBERON:0001882!5.28e-09!1;UBERON:0005403!5.28e-09!1;UBERON:0000369!8.89e-09!4;UBERON:0002435!8.89e-09!4;UBERON:0000204!8.89e-09!4;UBERON:0010082!8.89e-09!4;UBERON:0007023!9.35e-08!115;UBERON:0000025!1.53e-07!194;UBERON:0000064!2.22e-07!219 | |||
|ontology_enrichment_uberon_v019=UBERON:0000956;1.52e-17;25!UBERON:0000203;1.52e-17;25!UBERON:0002791;2.91e-13;32!UBERON:0001869;3.85e-13;32!UBERON:0003528;3.11e-12;34!UBERON:0002020;3.11e-12;34!UBERON:0001893;4.61e-11;34!UBERON:0002780;1.60e-08;41!UBERON:0001890;1.60e-08;41!UBERON:0001950;1.78e-08;20!UBERON:0002619;8.70e-08;22!UBERON:0002114;2.12e-07;2!UBERON:0000073;4.33e-07;53!UBERON:0002616;4.33e-07;53!UBERON:0000922;4.46e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.67e-21,81;UBERON:0001016,6.05e-19,89;UBERON:0000956,1.63e-17,25;UBERON:0000203,1.63e-17,25;UBERON:0002791,7.88e-14,32;UBERON:0001869,7.88e-14,32;UBERON:0003528,4.79e-13,34;UBERON:0002020,4.79e-13,34;UBERON:0001893,4.79e-13,34;UBERON:0002780,6.92e-11,41;UBERON:0001890,6.92e-11,41;UBERON:0003080,6.92e-11,41;UBERON:0006240,6.92e-11,41;UBERON:0004121,1.04e-09,171;UBERON:0000924,1.04e-09,171;UBERON:0006601,1.04e-09,171;UBERON:0011216,6.17e-09,223;UBERON:0000073,1.78e-08,53;UBERON:0002616,1.78e-08,53;UBERON:0001950,1.80e-08,20;UBERON:0001049,4.95e-08,56;UBERON:0005068,4.95e-08,56;UBERON:0006241,4.95e-08,56;UBERON:0007135,4.95e-08,56;UBERON:0002619,8.81e-08,22;UBERON:0002114,2.05e-07,2;UBERON:0003056,2.20e-07,61 | |||
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|short_description=p@chr6:98264504..98264513,+ | |||
}} | }} |
Latest revision as of 03:55, 31 July 2015
Short description: | p@chr6:98264504..98264513, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr6:98264504..98264513, + |
Coexpression cluster: | C10_occipital_temporal_parietal_brain_duodenum_Neurons_Neural |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 1.12e-55 | 8 |
neural cell | 4.55e-32 | 25 |
neuron | 2.12e-27 | 6 |
neuroblast | 2.12e-27 | 6 |
electrically signaling cell | 2.12e-27 | 6 |
astrocyte of the cerebral cortex | 8.95e-25 | 3 |
neurectodermal cell | 4.43e-14 | 59 |
ectodermal cell | 1.49e-11 | 72 |
oligodendrocyte | 3.30e-11 | 7 |
macroglial cell | 3.30e-11 | 7 |
astrocyte | 3.30e-11 | 7 |
oligodendrocyte precursor cell | 3.30e-11 | 7 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 4.67e-21 | 81 |
nervous system | 6.05e-19 | 89 |
cerebral cortex | 1.63e-17 | 25 |
pallium | 1.63e-17 | 25 |
regional part of telencephalon | 7.88e-14 | 32 |
cerebral hemisphere | 7.88e-14 | 32 |
brain grey matter | 4.79e-13 | 34 |
gray matter | 4.79e-13 | 34 |
telencephalon | 4.79e-13 | 34 |
regional part of forebrain | 6.92e-11 | 41 |
forebrain | 6.92e-11 | 41 |
anterior neural tube | 6.92e-11 | 41 |
future forebrain | 6.92e-11 | 41 |
ectoderm-derived structure | 1.04e-09 | 171 |
ectoderm | 1.04e-09 | 171 |
presumptive ectoderm | 1.04e-09 | 171 |
organ system subdivision | 6.17e-09 | 223 |
regional part of nervous system | 1.78e-08 | 53 |
regional part of brain | 1.78e-08 | 53 |
neocortex | 1.80e-08 | 20 |
neural tube | 4.95e-08 | 56 |
neural rod | 4.95e-08 | 56 |
future spinal cord | 4.95e-08 | 56 |
neural keel | 4.95e-08 | 56 |
regional part of cerebral cortex | 8.81e-08 | 22 |
duodenum | 2.05e-07 | 2 |
pre-chordal neural plate | 2.20e-07 | 61 |