FFCP PHASE1:Hg19::chr8:72756637..72756664,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr8:72756637..72756664,-
|short_description=p3@MSC
|description=CAGE_peak_3_at_MSC_5end
|association_with_transcript=38bp_to_ENST00000325509_5end
|EntrezGene=...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9242 | |EntrezGene=9242 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7321 | |HGNC=7321 | ||
|TSSclassifier=strong | |||
|UniProt=O60682 | |UniProt=O60682 | ||
|association_with_transcript=38bp_to_ENST00000325509_5end | |||
|cluster_id=chr8:72756637..72756664,- | |||
|coexpression_cluster_id=C3796 | |||
|description=CAGE_peak_3_at_MSC_5end | |||
|id=chr8:72756637..72756664,- | |||
|ontology_enrichment_celltype=CL:0000055!4.07e-29!180;CL:0000723!2.44e-19!436;CL:0000048!3.31e-19!430;CL:0000034!4.02e-18!444;CL:0000219!5.16e-15!390;CL:0000057!3.66e-14!75;CL:0000144!3.44e-12!625;CL:0002371!8.02e-12!591;CL:0000134!2.08e-10!358;CL:0000680!5.89e-10!57;CL:0000056!5.89e-10!57;CL:0000355!5.89e-10!57;CL:0000187!1.32e-09!54;CL:0002320!2.56e-09!365;CL:0000393!1.19e-08!60;CL:0000211!1.19e-08!60;CL:0002494!2.49e-08!16;CL:0000333!3.08e-08!41;CL:0000183!9.61e-08!59;CL:0000192!1.33e-07!42;CL:0000514!1.33e-07!42;CL:0000359!1.64e-07!32;CL:0000133!2.44e-07!59;CL:0000548!6.69e-07!679;CL:0000004!6.69e-07!679;CL:0000255!6.69e-07!679 | |||
|ontology_enrichment_celltype_v019=CL:0002494;1.21e-09;16!CL:0000359;1.27e-07;32!CL:0002334;5.80e-07;12!CL:0000192;7.95e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000723,8.04e-21,433;CL:0000048,1.72e-20,427;CL:0000034,2.01e-19,441;CL:0000219,4.24e-15,386;CL:0000134,1.84e-11,354;CL:0000680,1.05e-10,58;CL:0000056,1.05e-10,58;CL:0000355,1.05e-10,58;CL:0000187,1.56e-10,55;CL:0002320,1.62e-10,361;CL:0002494,9.08e-10,16;CL:0000057,1.88e-09,76;CL:0000192,5.85e-09,43;CL:0000514,5.85e-09,43;CL:0000393,2.10e-08,61;CL:0000211,2.10e-08,61;CL:0000359,7.91e-08,32;CL:0000136,4.09e-07,15;CL:0000333,4.21e-07,41;CL:0002334,8.38e-07,12 | |||
|ontology_enrichment_development_v019=CL:0000514;7.95e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;3.45e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,3.60e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0004290!2.41e-10!70;UBERON:0002384!4.38e-10!375;UBERON:0000914!5.25e-10!83;UBERON:0002329!5.25e-10!83;UBERON:0003077!5.25e-10!83;UBERON:0003059!5.25e-10!83;UBERON:0007282!5.25e-10!83;UBERON:0009618!5.25e-10!83;UBERON:0007285!5.25e-10!83;UBERON:0001134!1.36e-09!61;UBERON:0002036!1.36e-09!61;UBERON:0003082!1.36e-09!61;UBERON:0002385!1.74e-09!63;UBERON:0001015!1.74e-09!63;UBERON:0000383!1.74e-09!63;UBERON:0000948!7.69e-09!24;UBERON:0005498!7.69e-09!24;UBERON:0004140!7.69e-09!24;UBERON:0009881!7.69e-09!24;UBERON:0004141!7.69e-09!24;UBERON:0003084!7.69e-09!24;UBERON:0007005!7.69e-09!24;UBERON:0004139!7.69e-09!24;UBERON:0004291!7.69e-09!24;UBERON:0007100!1.80e-08!27;UBERON:0002204!2.68e-08!167;UBERON:0004872!1.35e-07!84;UBERON:0000486!2.09e-07!82;UBERON:0001637!9.29e-07!42;UBERON:0003509!9.29e-07!42;UBERON:0004572!9.29e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0000948;2.46e-08;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,2.72e-11,371;UBERON:0001134,1.12e-10,62;UBERON:0002036,1.12e-10,62;UBERON:0003082,1.12e-10,62;UBERON:0002385,5.85e-10,64;UBERON:0001015,5.85e-10,64;UBERON:0000383,5.85e-10,64;UBERON:0000926,6.26e-10,315;UBERON:0004120,6.26e-10,315;UBERON:0006603,6.26e-10,315;UBERON:0002329,9.89e-10,71;UBERON:0003059,9.89e-10,71;UBERON:0007282,9.89e-10,71;UBERON:0004290,9.89e-10,71;UBERON:0009618,9.89e-10,71;UBERON:0004872,1.15e-09,83;UBERON:0007524,1.20e-09,73;UBERON:0003077,2.03e-09,72;UBERON:0007285,2.03e-09,72;UBERON:0000948,2.48e-09,24;UBERON:0005498,2.48e-09,24;UBERON:0004140,2.48e-09,24;UBERON:0009881,2.48e-09,24;UBERON:0004141,2.48e-09,24;UBERON:0003084,2.48e-09,24;UBERON:0007005,2.48e-09,24;UBERON:0004139,2.48e-09,24;UBERON:0004291,2.48e-09,24;UBERON:0001637,1.46e-08,42;UBERON:0003509,1.46e-08,42;UBERON:0004572,1.46e-08,42;UBERON:0000486,6.40e-08,83;UBERON:0002204,7.75e-08,167;UBERON:0004573,9.19e-08,33;UBERON:0004571,9.19e-08,33;UBERON:0007503,9.31e-08,78;UBERON:0007100,1.34e-07,27;UBERON:0004457,1.37e-07,12;UBERON:0000042,1.37e-07,12 | |||
|phase1_expression=3.81524596468169,2.78330681058278,11.5582611358696,3.00219895059391,7.15137751083661,12.2127393374052,5.06599756336621,0.631719873426831,0.261185628199839,8.84642171405432,0,0,0,0,0,1.34465029290355,1.20538905604795,2.19093027116212,1.95173119516203,0,0.204000691244253,2.19418305034661,0.85870796139317,0.547497700291537,0.87879847716362,17.0401894817931,21.181952078086,22.7474157996533,0,0.383829398097213,0.154816123316076,0,0,0,0.0774672005803016,0,0,0,0.401088894940283,0.217010870715852,0.223915474239924,0.32389366601898,0,0,0.377875943688809,0.485168122375632,3.95129362739664,17.2690512969167,5.26500830521676,2.3015391385772,0,1.18241114944293,1.03423704220986,1.93645405075148,0,1.31769637679823,4.63940455098338,3.59557575112135,1.83650335422542,3.53021929783703,1.91801137739712,0.329851300186716,0.398927315243264,0,20.0244374653723,24.9649498864101,28.0270012048009,0.75374599577023,2.08593167368081,1.3031330682307,13.9241885605675,18.7821594353658,11.3926459478718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574752439954483,0,0.954053754535364,0,0,0,0,0,0,0,0,0.411202997999018,0,0,0,0,0,0,0,0,0.25618263945135,0,0,0,0,0,0,0,0,0,0.34362744548263,0.253019692019503,0,0,0,0,0.127986611154418,1.24930726552346,0,0,0,0.534880391567015,0,2.43806866313962,3.35350429851818,5.24236503558474,1.44575660953827,1.50401373190767,0.724232594804119,2.3858578411533,4.37971383272372,0,0,0.966182642624386,0.392937226493138,0,0,5.51730569212962,4.35324343248168,2.52620124985844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.9152146474689,11.9032680964705,9.1362334761121,8.3182620017156,8.51204117276057,8.41016400213461,9.60740961567345,8.6333641946006,0.622422070799533,8.48677234039035,1.9615428373615,0.908144565869588,1.72852777344,32.5706790248977,0.312160076830321,0.570471821544449,0.298897361103602,0.117434498643765,0.647491777472526,0.140450806702248,0.61246251376468,0.982674538494144,6.61284999524899,13.0680314301026,18.5450196958918,3.64064544775211,13.6537446945085,0.505008341862199,0.250237039743928,0.831192346452549,3.5118209670467,2.14541457059314,11.8688066536211,2.7223723958405,0.179389635688862,1.49490172172997,2.11931901159562,0,0.103052529238439,0.515281080091258,1.8611685633159,0.168776332241266,1.46155507741798,0,1.74894807420369,0.80823028409406,0,0,0,0,0,0,0.121973706129595,0,0.116193942869518,0.207322110030741,0,0,10.9514672630871,2.57296375277154,1.38134921352481,0.928735856063958,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,2.057870056657,5.88034845542168,0,0,0,0,0,0,0,0,0.201057944823262,0,2.93227474779292,1.03993478527958,0,0.115930404975077,0.234817388471643,0.144366447761074,1.38895653772983,0.190254152234598,0,0,0.246217006087397,7.02012795417713,2.37809859661965,0,0.503946384596579,0.283550194484773,0.268675568108545,0,0,0,0,0,0,0,40.3211628755273,26.3572013635212,43.3704554677174,39.3466625852222,15.8354338763118,3.90445975197093,22.5802881778157,0.112131084345361,0.43596006883328,0,2.32689088364,3.57656445851882,0.845302752556,1.06375246633948,2.08014873822732,0,0,0,0.714889968290738,0,0,2.60588947434988,0.710783897485092,1.58390374586686,8.741741934728,11.3299349618038,3.499054691372,0,0.502257091432126,0,11.7416179190875,1.14861935834114,0,1.59259437334337,0.205476322550383,1.79060963239896,24.3224762465954,0.197030760201927,0,0.128343036279748,1.77866236955724,0,0,0.837581326671744,0,0,0,0,0,0,0,7.27898015357825,5.88815663030634,4.57337003598411,1.40569697991256,0.300946099727719,2.27407504055985,3.10419213877515,2.65690239414175,0,0.955719759148911,0.195801157462741,0,0.206768026122887,0,0.213455115606889,0,0,0,19.1043012020458,2.30192959932094,4.77122160536225,37.1603532841533,4.09365799253363,29.4362675692802,5.93672265779964,2.31314540703983,5.85953693533319,1.39616165223476,1.03850885836724,0.813472649219715,0,0.200506470303285,0,5.28146461557191,3.27764102412091,3.40923478894503,0,0,0.784349769176855,0,0.211103257785751,0,0,0,0,0,0,0,0,0,0,0,0,0,5.20605431462885,0.824328093181778,0.27470839445503,0.082509499920588,1.14853107599234,0,17.6752322828576,26.0044232205808,0.462145851343933,1.07452572308291,1.10269257987624,1.50388342815583,0.435050081742686,0.340906509664404,23.3263933394452,0.330569830721956,0,0,0.2023155617111,1.85938219718914,1.88887408098384,2.7881490806424,0.616067160352178,4.25844824253617,0.869932992075073,1.11194531462352,5.29562080945368,0,0,1.14378116354295,0,1.71175595213568,0.95460974377781,5.49464048139461,1.79872457583315,1.09814811894422,1.53156123049392,3.63928466831969,3.17020642346017,6.31887684358472,2.43816869544795,5.11798328225697,3.16950440270266,2.59349831675173,1.69686518344455,3.39024349860728,2.75682671773062,5.97095077717098,5.69986150829892,0,0,1.42037263873893,2.78841148289775,2.53526042279017,0.430234056612155,0,1.426684205925,2.48332744849418,9.07762831779956,17.7819242198347,0.379473173765715,0.699869440489966,0,1.34060455107157,0,1.03558180854457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.39705560002972,0.5745161103971,1.48171507906718,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| ||
|short_description=p3@MSC | |||
}} | }} |
Latest revision as of 01:13, 19 September 2015
Short description: | p3@MSC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_MSC_5end |
Coexpression cluster: | C3796_neuroectodermal_neuroblastoma_rhabdomyosarcoma_cholangiocellular_hereditary_glioma_mesenchymal |
Association with transcript: | 38bp_to_ENST00000325509_5end |
EntrezGene: | MSC |
HGNC: | 7321 |
UniProt: | O60682 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
somatic stem cell | 8.04e-21 | 433 |
multi fate stem cell | 1.72e-20 | 427 |
stem cell | 2.01e-19 | 441 |
motile cell | 4.24e-15 | 386 |
mesenchymal cell | 1.84e-11 | 354 |
muscle precursor cell | 1.05e-10 | 58 |
myoblast | 1.05e-10 | 58 |
multi-potent skeletal muscle stem cell | 1.05e-10 | 58 |
muscle cell | 1.56e-10 | 55 |
connective tissue cell | 1.62e-10 | 361 |
cardiocyte | 9.08e-10 | 16 |
fibroblast | 1.88e-09 | 76 |
smooth muscle cell | 5.85e-09 | 43 |
smooth muscle myoblast | 5.85e-09 | 43 |
electrically responsive cell | 2.10e-08 | 61 |
electrically active cell | 2.10e-08 | 61 |
vascular associated smooth muscle cell | 7.91e-08 | 32 |
fat cell | 4.09e-07 | 15 |
migratory neural crest cell | 4.21e-07 | 41 |
preadipocyte | 8.38e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 3.60e-08 | 14 |