FFCP PHASE1:Hg19::chr8:72756667..72756736,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr8:72756667..72756736,-
|short_description=p2@MSC
|description=CAGE_peak_2_at_MSC_5end
|association_with_transcript=0bp_to_ENST00000325509,NM_005098,uc003xyx....") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9242 | |EntrezGene=9242 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7321 | |HGNC=7321 | ||
|TSSclassifier=strong | |||
|UniProt=O60682 | |UniProt=O60682 | ||
|association_with_transcript=0bp_to_ENST00000325509,NM_005098,uc003xyx.1_5end | |||
|cluster_id=chr8:72756667..72756736,- | |||
|coexpression_cluster_id=C3796 | |||
|description=CAGE_peak_2_at_MSC_5end | |||
|id=chr8:72756667..72756736,- | |||
|ontology_enrichment_celltype=CL:0000055!2.09e-30!180;CL:0000048!1.64e-19!430;CL:0000723!3.40e-19!436;CL:0000034!9.88e-19!444;CL:0000057!1.73e-14!75;CL:0000219!6.72e-14!390;CL:0000680!7.80e-12!57;CL:0000056!7.80e-12!57;CL:0000355!7.80e-12!57;CL:0000144!1.01e-11!625;CL:0002371!2.51e-11!591;CL:0000187!2.55e-11!54;CL:0000183!9.65e-11!59;CL:0000393!3.04e-10!60;CL:0000211!3.04e-10!60;CL:0000134!4.08e-10!358;CL:0002320!1.71e-09!365;CL:0000192!5.06e-09!42;CL:0000514!5.06e-09!42;CL:0002494!9.75e-08!16;CL:0000359!3.13e-07!32;CL:0000333!3.63e-07!41;CL:0000136!7.67e-07!15 | |||
|ontology_enrichment_celltype_v019=CL:0002494;1.09e-08;16!CL:0002334;9.08e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000723,2.87e-21,433;CL:0000048,3.24e-21,427;CL:0000034,7.65e-20,441;CL:0000219,1.66e-14,386;CL:0000057,3.61e-13,76;CL:0000680,7.04e-12,58;CL:0000056,7.04e-12,58;CL:0000355,7.04e-12,58;CL:0000134,1.77e-11,354;CL:0000187,2.80e-11,55;CL:0002320,1.03e-10,361;CL:0000393,4.13e-10,61;CL:0000211,4.13e-10,61;CL:0002494,8.23e-09,16;CL:0000192,1.76e-08,43;CL:0000514,1.76e-08,43;CL:0000136,4.26e-07,15;CL:0002334,7.56e-07,12 | |||
|ontology_enrichment_development_v019=CL:0000355;8.12e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004290!5.38e-12!70;UBERON:0000914!8.04e-12!83;UBERON:0002329!8.04e-12!83;UBERON:0003077!8.04e-12!83;UBERON:0003059!8.04e-12!83;UBERON:0007282!8.04e-12!83;UBERON:0009618!8.04e-12!83;UBERON:0007285!8.04e-12!83;UBERON:0001134!5.10e-11!61;UBERON:0002036!5.10e-11!61;UBERON:0003082!5.10e-11!61;UBERON:0002385!9.60e-11!63;UBERON:0001015!9.60e-11!63;UBERON:0000383!9.60e-11!63;UBERON:0002384!2.40e-10!375;UBERON:0000486!3.37e-09!82;UBERON:0000948!4.25e-09!24;UBERON:0005498!4.25e-09!24;UBERON:0004140!4.25e-09!24;UBERON:0009881!4.25e-09!24;UBERON:0004141!4.25e-09!24;UBERON:0003084!4.25e-09!24;UBERON:0007005!4.25e-09!24;UBERON:0004139!4.25e-09!24;UBERON:0004291!4.25e-09!24;UBERON:0007100!3.79e-08!27;UBERON:0002204!1.93e-07!167;UBERON:0004872!7.71e-07!84 | |||
|ontology_enrichment_uberon_v019=UBERON:0000948;9.75e-09;22!UBERON:0007100;2.11e-07;25!UBERON:0001013;3.73e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,1.14e-11,371;UBERON:0001134,5.20e-11,62;UBERON:0002036,5.20e-11,62;UBERON:0003082,5.20e-11,62;UBERON:0002329,8.68e-11,71;UBERON:0003059,8.68e-11,71;UBERON:0007282,8.68e-11,71;UBERON:0004290,8.68e-11,71;UBERON:0009618,8.68e-11,71;UBERON:0007524,1.50e-10,73;UBERON:0003077,2.13e-10,72;UBERON:0007285,2.13e-10,72;UBERON:0002385,3.66e-10,64;UBERON:0001015,3.66e-10,64;UBERON:0000383,3.66e-10,64;UBERON:0000948,6.99e-10,24;UBERON:0005498,6.99e-10,24;UBERON:0004140,6.99e-10,24;UBERON:0009881,6.99e-10,24;UBERON:0004141,6.99e-10,24;UBERON:0003084,6.99e-10,24;UBERON:0007005,6.99e-10,24;UBERON:0004139,6.99e-10,24;UBERON:0004291,6.99e-10,24;UBERON:0000926,6.95e-09,315;UBERON:0004120,6.95e-09,315;UBERON:0006603,6.95e-09,315;UBERON:0007100,1.85e-08,27;UBERON:0007503,2.51e-08,78;UBERON:0000486,2.76e-08,83;UBERON:0004872,2.96e-08,83;UBERON:0001013,2.58e-07,14 | |||
|phase1_expression=8.17552706717505,8.56402095563933,12.1220787522535,5.00366491765652,21.4541325325098,10.4680622892044,7.59899634504932,2.52687949370732,4.70134130759709,12.2866968250754,0,0,0.527533956456907,0.247532705920093,0,5.3786011716142,2.41077811209591,0.730310090387373,0.975865597581014,0.738726348460727,0.204000691244253,2.82109249330279,1.43117993565528,0.547497700291537,2.76193807108566,22.2363010726538,27.7499992340817,24.9513176764363,0,1.15148819429164,0,0,0,0,0,0,0,1.10799081706375,0.200544447470142,0.434021741431704,0,0,0.257575567634187,0.145398238779565,1.13362783106643,0,4.41615170120801,9.04569353648017,6.50383378879718,1.7261543539329,1.5369642391746,3.07426898855161,0.689491361473237,1.93645405075148,0,0.941211697713023,5.18521685109907,6.74170453335254,2.75475503133812,2.88836124368484,3.19668562899521,0,0.199463657621632,0.852449501065388,18.2831820336008,19.8584828641899,14.3249117268982,2.26123798731069,0.521482918420201,1.3031330682307,14.5295880632009,9.57521853567668,7.27863491114034,0,0,0,0,0,0,0,0,0,0,1.09227722252426,1.77901850772711,0.426730222566507,0,0.574752439954483,0.661044872784862,0,0,0,0,0,0.560508562981536,0,0.393419540227666,0.393010762749165,0.411202997999018,0,0,0,0,0,0,0.221533894583621,0.270803863765016,0.896639238079726,0,0,0,0,0,0,0,0,0.383220493601921,0,0.253019692019503,0.637130828648193,0,0.950452044448374,0.301150238155546,0.127986611154418,1.24930726552346,1.18388626022008,0.821127996921047,0.201606743224732,0.267440195783507,0.289648807765598,19.5045493051169,5.36560687762909,5.37022759742827,2.53007406669196,3.50936537445123,1.59331170856906,1.5905718941022,4.37971383272372,0.189069634328136,0.665188192387692,0.87834785693126,0.982343066232845,0,0,5.51730569212962,6.61693001737215,3.72282289452822,0,0,0,0,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.4121865991642,15.069030888085,4.36950296683622,14.0549944166919,8.51204117276057,10.6528744027038,7.47242970107935,11.8400423240237,2.8008993185979,10.2380110772963,2.7788523529288,3.02714855289863,6.91411109375999,30.4617861383936,1.24864030732128,0.570471821544449,0.747243402759005,0.822041490506354,1.61872944368132,0.842704840213491,3.0623125688234,1.84251475967652,9.71262343052195,32.0760771466154,34.3701031697194,2.73048408581408,20.8399261126709,2.02003336744879,0.375355559615893,1.10825646193673,1.75591048352335,5.51678032438235,23.2868991305225,5.21788042536097,0.358779271377724,4.69826255400848,3.39091041855299,0.900273288253207,2.37020817248409,0.772921620136887,2.41951913231067,0.843881661206331,3.21542117031955,0,4.14224543890347,2.90962902273861,0,0.10075209822764,1.18692414617341,0,0.545492241181669,0,0.487894824518382,0.530119073285941,0.580969714347592,1.14027160516907,0.504641701751257,0,10.9514672630871,11.5783368874719,6.90674606762403,1.39310378409594,0.721879481669586,0,0,0,0,0,0,0,0,0,0,2.80483547606892,4.5273141246454,1.47008711385542,0,0,1.18157981336281,0,0,0.343135620597051,0,0,0,0,4.88712457965487,2.07986957055916,1.44331342025273,0,0.117408694235822,0.144366447761074,1.38895653772983,0.761016608938393,0,0,0.984868024349589,13.5722473780758,4.7561971932393,1.87467667973554,0.16798212819886,0.425325291727159,0,0.290633938513962,0.766765358330422,0,0,0,0,0,10.9851357125452,11.8416411923066,15.2382681373061,6.84289784090821,9.76861180681573,0.901029173531752,12.2905366031149,0.112131084345361,2.1798003441664,0.1466765716419,2.71470603091333,21.4593867511129,5.917119267892,3.72313363218819,3.12022310734098,0,0,0,3.71742783511184,0,0,4.23457039581856,3.909311436168,5.543663110534,12.0575750823834,11.3299349618038,4.39881161201051,2.43247561282381,0,0,13.179367052037,11.4861935834114,0,2.31650090668127,1.84928690295345,4.1184021545176,21.0720070707831,0.197030760201927,0.215627574859517,0,0.508189248444927,0,0,0.837581326671744,0,0,0,0,0,0,0,14.5579603071565,8.74302045106093,11.1968714674094,4.80279801470124,3.00946099727719,4.5481500811197,12.4167685551006,2.65690239414175,0.921845842708516,3.30157734978715,0.979005787313703,4.46086450954113,0,0,0.106727557803444,0,0,0,18.6080855864083,4.14347327877769,12.6297042494883,28.4468911347656,7.16390148693385,22.0369871966742,11.8734453155993,5.5515489768956,4.26148140751505,1.97105174433142,5.19254429183621,1.39452454151951,0,0,0,7.92219692335787,5.09855270418808,7.73634048260602,0.902399225814824,0.0770153371044148,0,0,0.316654886678627,0,0,0,0,0.812839312631559,0.501689773854853,0.254876273045038,0,0,0,0,0,0,8.13445986660758,2.26690225624989,0.457847324091717,0.165018999841176,2.29706215198469,0,16.068392984416,30.8379591351869,1.07834031980251,1.99554777143968,2.06754858726796,3.22260734604821,1.88521702088497,2.55679882248303,26.2644505157875,0.826424576804891,0.384380134730212,0,0,3.71876439437829,3.77774816196768,0.6970372701606,3.38836938193698,4.25844824253617,5.21959795245044,2.22389062924704,6.86999456361558,0.744316738719335,1.89827654831236,4.76575484809562,1.535386747868,3.85145089230528,3.18203247925937,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| ||
|short_description=p2@MSC | |||
}} | }} |
Latest revision as of 01:14, 19 September 2015
Short description: | p2@MSC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_MSC_5end |
Coexpression cluster: | C3796_neuroectodermal_neuroblastoma_rhabdomyosarcoma_cholangiocellular_hereditary_glioma_mesenchymal |
Association with transcript: | 0bp_to_ENST00000325509, NM_005098, uc003xyx.1_5end |
EntrezGene: | MSC |
HGNC: | 7321 |
UniProt: | O60682 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
somatic stem cell | 2.87e-21 | 433 |
multi fate stem cell | 3.24e-21 | 427 |
stem cell | 7.65e-20 | 441 |
motile cell | 1.66e-14 | 386 |
fibroblast | 3.61e-13 | 76 |
muscle precursor cell | 7.04e-12 | 58 |
myoblast | 7.04e-12 | 58 |
multi-potent skeletal muscle stem cell | 7.04e-12 | 58 |
mesenchymal cell | 1.77e-11 | 354 |
muscle cell | 2.80e-11 | 55 |
connective tissue cell | 1.03e-10 | 361 |
electrically responsive cell | 4.13e-10 | 61 |
electrically active cell | 4.13e-10 | 61 |
cardiocyte | 8.23e-09 | 16 |
smooth muscle cell | 1.76e-08 | 43 |
smooth muscle myoblast | 1.76e-08 | 43 |
fat cell | 4.26e-07 | 15 |
preadipocyte | 7.56e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 1.14e-11 | 371 |
skeletal muscle tissue | 5.20e-11 | 62 |
striated muscle tissue | 5.20e-11 | 62 |
myotome | 5.20e-11 | 62 |
somite | 8.68e-11 | 71 |
presomitic mesoderm | 8.68e-11 | 71 |
presumptive segmental plate | 8.68e-11 | 71 |
dermomyotome | 8.68e-11 | 71 |
trunk paraxial mesoderm | 8.68e-11 | 71 |
dense mesenchyme tissue | 1.50e-10 | 73 |
paraxial mesoderm | 2.13e-10 | 72 |
presumptive paraxial mesoderm | 2.13e-10 | 72 |
muscle tissue | 3.66e-10 | 64 |
musculature | 3.66e-10 | 64 |
musculature of body | 3.66e-10 | 64 |
heart | 6.99e-10 | 24 |
primitive heart tube | 6.99e-10 | 24 |
primary heart field | 6.99e-10 | 24 |
anterior lateral plate mesoderm | 6.99e-10 | 24 |
heart tube | 6.99e-10 | 24 |
heart primordium | 6.99e-10 | 24 |
cardiac mesoderm | 6.99e-10 | 24 |
cardiogenic plate | 6.99e-10 | 24 |
heart rudiment | 6.99e-10 | 24 |
mesoderm | 6.95e-09 | 315 |
mesoderm-derived structure | 6.95e-09 | 315 |
presumptive mesoderm | 6.95e-09 | 315 |
primary circulatory organ | 1.85e-08 | 27 |
epithelial vesicle | 2.51e-08 | 78 |
multilaminar epithelium | 2.76e-08 | 83 |
splanchnic layer of lateral plate mesoderm | 2.96e-08 | 83 |
adipose tissue | 2.58e-07 | 14 |