FFCP PHASE1:Hg19::chr1:109289279..109289331,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6814 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11446 | |||
|TSSclassifier=strong | |||
|UniProt=O00186 | |||
|association_with_transcript=0bp_to_ENST00000370008,ENST00000469338,ENST00000483586,NM_007269,uc001dvy.2,uc001dvz.2_5end | |||
|cluster_id=chr1:109289279..109289331,+ | |||
|coexpression_cluster_id=C176 | |||
|description=CAGE_peak_1_at_STXBP3_5end | |||
|id=chr1:109289279..109289331,+ | |||
|ontology_enrichment_celltype=CL:0000037!3.02e-31!172;CL:0000566!3.02e-31!172;CL:0000738!1.16e-30!140;CL:0002032!1.66e-30!165;CL:0000837!1.66e-30!165;CL:0000763!6.41e-30!112;CL:0000049!6.41e-30!112;CL:0000766!7.03e-30!76;CL:0000839!6.49e-27!70;CL:0000988!7.22e-27!182;CL:0002031!9.08e-27!124;CL:0000557!2.68e-26!71;CL:0002009!4.20e-24!65;CL:0002194!4.37e-23!63;CL:0000576!4.37e-23!63;CL:0000040!4.37e-23!63;CL:0000559!4.37e-23!63;CL:0002087!8.87e-23!119;CL:0002057!3.55e-22!42;CL:0000860!1.46e-21!45;CL:0000134!3.08e-07!358 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.62e-16;33!CL:0002057;3.62e-16;33!CL:0000576;2.97e-15;48!CL:0000473;3.99e-14;39!CL:0000234;3.99e-14;39!CL:0000766;1.45e-13;69!CL:0000763;7.19e-09;100!CL:0000738;1.83e-07;136!CL:0002087;2.03e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,5.35e-31,168;CL:0000738,1.65e-30,136;CL:0002032,2.85e-30,161;CL:0000837,2.85e-30,161;CL:0000766,3.61e-30,72;CL:0000763,6.93e-30,108;CL:0000049,6.93e-30,108;CL:0000988,2.80e-27,177;CL:0000839,3.38e-27,66;CL:0002031,1.23e-26,120;CL:0000557,1.51e-26,67;CL:0002009,2.30e-24,61;CL:0002194,2.44e-23,59;CL:0000576,2.44e-23,59;CL:0000040,2.44e-23,59;CL:0000559,2.44e-23,59;CL:0000473,1.06e-22,48;CL:0000234,1.06e-22,48;CL:0002087,1.28e-22,115;CL:0000860,3.55e-22,42;CL:0002057,3.55e-22,42;CL:0000134,2.50e-07,354 | |||
|ontology_enrichment_development_v019=CL:0002057;3.30e-16;42!CL:0000049;1.11e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.34e-27!102;UBERON:0003061!3.34e-27!102;UBERON:0002193!8.77e-23!112;UBERON:0002371!1.56e-22!80;UBERON:0007023!2.00e-21!115;UBERON:0001474!1.28e-20!86;UBERON:0004765!2.96e-19!101;UBERON:0001434!2.96e-19!101;UBERON:0002405!1.76e-11!115;UBERON:0001049!1.73e-10!57;UBERON:0005068!1.73e-10!57;UBERON:0006241!1.73e-10!57;UBERON:0007135!1.73e-10!57;UBERON:0002616!1.51e-08!59;UBERON:0002780!2.76e-08!41;UBERON:0001890!2.76e-08!41;UBERON:0006240!2.76e-08!41;UBERON:0003080!4.33e-08!42;UBERON:0000955!6.25e-07!69;UBERON:0006238!6.25e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;6.50e-07;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.47e-27,98;UBERON:0003061,3.47e-27,98;UBERON:0002193,1.20e-22,108;UBERON:0002371,1.40e-22,76;UBERON:0007023,4.63e-21,114;UBERON:0001474,1.40e-20,82;UBERON:0004765,7.74e-20,90;UBERON:0001434,4.20e-18,100;UBERON:0002405,1.22e-17,93;UBERON:0001049,1.11e-10,56;UBERON:0005068,1.11e-10,56;UBERON:0006241,1.11e-10,56;UBERON:0007135,1.11e-10,56;UBERON:0000073,1.20e-09,53;UBERON:0002616,1.20e-09,53;UBERON:0002780,2.76e-08,41;UBERON:0001890,2.76e-08,41;UBERON:0003080,2.76e-08,41;UBERON:0006240,2.76e-08,41;UBERON:0000955,4.90e-07,68;UBERON:0006238,4.90e-07,68 | |||
|phase1_expression=25.798329856419,17.7703434829516,26.7813367782345,14.0102617694383,13.8557939272459,12.2127393374052,5.06599756336621,14.5295570888171,9.40268261519419,1.96587149201207,3.48900583986214,7.64544802455603,7.3854753903967,26.8572985923301,22.8664189252262,19.4974292471015,28.3266428171269,17.527442169297,19.0293791528298,7.75662665883764,5.50801866359483,4.38836610069323,26.0474748289262,22.3105312868801,19.5846517767892,20.1731391174591,22.2492597409353,21.4093325173208,31.8625064247612,49.8978217526376,37.4655018424904,15.6301608161418,4.819294700452,8.50434223383612,18.747062540433,17.9133232934151,41.3976619462135,63.7094719811659,51.5399229998264,62.933152507597,47.6939960131039,45.9929005746951,50.9999623915689,76.0432788817123,60.4601509902095,59.433094991015,86.231172692009,84.7005849324961,58.8442104700697,37.4000110018796,43.8034808164762,44.458659219054,71.0176102317434,73.5852539285562,35.2108865145289,79.061782607894,72.3201297653291,82.9229657602362,74.0723019537584,72.8508891462732,60.0976898251099,49.8075463281941,51.6610873240027,49.4420710617925,74.8739835661747,74.8948496592304,59.7909359035752,42.2097757631329,41.7186334736161,51.2565673504075,62.9615482738703,81.3893575532518,65.5077142002631,57.4614378768482,61.4426426898976,61.6396417794625,65.3752633272602,62.1732336363836,86.9525424031203,52.727357592131,61.6641699317179,68.3163935079731,45.7590235599439,31.1299008419415,44.4754626931777,47.3670547048823,42.0415786387813,37.3589085970414,39.0016474943069,39.1162039359499,29.5990743936913,37.5831801197401,27.5236724250165,46.2599650026591,63.8979761798951,33.4497787664348,35.40775862049,35.3709686474248,42.1483072948994,50.1559486172034,38.4588274627637,32.1944507899619,33.1205438293449,46.1239291504619,47.136945195974,44.3067789167242,50.3695186602929,31.5104646525161,28.4829971156133,20.3903001708558,21.831651405082,37.9642042312919,39.1476526747839,36.385552620201,26.1338809512442,41.017982056519,45.2200182450267,36.0808817756761,48.0737414837055,44.5991580053735,49.4823424930878,52.2748624446606,57.670270606787,49.6588051279143,56.2188269485556,58.2472040028281,55.8367037906312,34.4747530914292,34.2323450602889,29.8338271998566,21.9426179682566,12.7433163343691,16.877858163346,18.4333967716129,17.0454889616202,20.568205692437,14.3151470469198,24.3317435151318,27.0369577089234,20.6208339640184,20.3776702808052,17.6821751921912,3.64295288292542,5.56176664176644,38.945687238562,33.4329095614593,33.9042799323106,25.7569874249769,25.7397709851058,22.6589075811035,9.14307073886843,6.02164216574287,8.67851254018986,7.34900324501212,12.5849830862972,15.4066103486438,10.0317583937669,27.3921764719489,27.03823596419,27.1123696339383,12.0848795132744,9.12326526862215,13.1793511076012,20.2214694190228,4.86085168729056,28.3080138660533,25.8208778520095,25.1123601477809,15.3316637465883,4.74632829784064,9.52649068438118,204.259647025898,209.401342640096,3.05265836499774,20.8728219712034,25.4527328445805,47.0052591886927,28.1099888333837,19.1520926387113,12.3349072031308,8.5399196583764,13.3200476145266,26.7641490443799,26.8074237418679,20.9231235985227,9.23280308634082,19.01380550784,5.85803579584492,25.5971263000863,11.409436430889,19.1294311106305,20.5510372626589,21.0434827678571,16.8540968042698,35.5228257983514,18.1794789621417,25.4181421692383,28.5120685747693,26.7048283620841,2.73048408581408,0.718618141816238,27.4387865745128,19.6436076198984,33.247693858102,28.5335453572545,16.8568287689461,22.2352327181763,23.3670297309643,39.1069405801719,26.0540014358652,26.0676238426261,33.0100205692843,31.8432315346776,40.1919242471182,18.4255687768274,31.8987267935993,24.5541253006221,44.4283442669642,26.5103708089822,36.0470706705951,45.08621824961,25.5910329498206,13.564847384839,38.6521706326594,28.6383426620376,34.1297468512915,24.7606623443079,20.4095843215087,21.2634915451219,22.5981099933508,23.4658391314334,15.6940264402607,10.9514672630871,23.1566737749439,5.52539685409922,24.1471322576629,20.934504968418,13.2503616044625,21.0730862597627,18.0758272412612,17.4264476917182,19.827029412409,18.7443789097766,18.6067205261027,18.2485962566572,18.4678635334267,8.85786545549578,0,4.9388881359768,2.94017422771084,21.5483559197112,22.6050259835854,34.2658145875214,21.1902287719032,14.8816010637167,26.76457840657,15.4747902426162,4.49607013030478,18.798917840975,28.4246526636686,6.51616610620649,5.19967392639789,18.7630744632855,29.7941140785947,23.012104070221,13.4260796417799,8.33373922637899,22.8304982681518,12.6432703673484,14.5942647556128,48.5047501992173,40.4827378690881,36.2660035984497,42.1802252940496,37.6279967165445,36.1526497968085,45.3166124876412,32.2603671750498,11.5014803749563,71.4361694949118,38.0369234937137,86.4558241805019,72.0599767084807,77.6390965572237,26.4786219198345,11.4596527667483,9.37739577680376,0,21.5937734676979,27.0308752059526,29.4401225609496,9.53114216935566,9.59112151433216,25.7417383231535,19.77857251094,3.57656445851882,16.90605505112,20.7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| |||
|short_description=p1@STXBP3 | |||
}} |
Latest revision as of 20:11, 15 September 2015
Short description: | p1@STXBP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_STXBP3_5end |
Coexpression cluster: | C176_Eosinophils_Neutrophils_Mast_CD14_CD4_Basophils_CD19 |
Association with transcript: | 0bp_to_ENST00000370008, ENST00000469338, ENST00000483586, NM_007269, uc001dvy.2, uc001dvz.2_5end |
EntrezGene: | STXBP3 |
HGNC: | 11446 |
UniProt: | O00186 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 5.35e-31 | 168 |
leukocyte | 1.65e-30 | 136 |
hematopoietic oligopotent progenitor cell | 2.85e-30 | 161 |
hematopoietic multipotent progenitor cell | 2.85e-30 | 161 |
myeloid leukocyte | 3.61e-30 | 72 |
myeloid cell | 6.93e-30 | 108 |
common myeloid progenitor | 6.93e-30 | 108 |
hematopoietic cell | 2.80e-27 | 177 |
myeloid lineage restricted progenitor cell | 3.38e-27 | 66 |
hematopoietic lineage restricted progenitor cell | 1.23e-26 | 120 |
granulocyte monocyte progenitor cell | 1.51e-26 | 67 |
macrophage dendritic cell progenitor | 2.30e-24 | 61 |
monopoietic cell | 2.44e-23 | 59 |
monocyte | 2.44e-23 | 59 |
monoblast | 2.44e-23 | 59 |
promonocyte | 2.44e-23 | 59 |
defensive cell | 1.06e-22 | 48 |
phagocyte | 1.06e-22 | 48 |
nongranular leukocyte | 1.28e-22 | 115 |
classical monocyte | 3.55e-22 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.55e-22 | 42 |
mesenchymal cell | 2.50e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 3.47e-27 | 98 |
blood island | 3.47e-27 | 98 |
hemolymphoid system | 1.20e-22 | 108 |
bone marrow | 1.40e-22 | 76 |
adult organism | 4.63e-21 | 114 |
bone element | 1.40e-20 | 82 |
skeletal element | 7.74e-20 | 90 |
skeletal system | 4.20e-18 | 100 |
immune system | 1.22e-17 | 93 |
neural tube | 1.11e-10 | 56 |
neural rod | 1.11e-10 | 56 |
future spinal cord | 1.11e-10 | 56 |
neural keel | 1.11e-10 | 56 |
regional part of nervous system | 1.20e-09 | 53 |
regional part of brain | 1.20e-09 | 53 |
regional part of forebrain | 2.76e-08 | 41 |
forebrain | 2.76e-08 | 41 |
anterior neural tube | 2.76e-08 | 41 |
future forebrain | 2.76e-08 | 41 |
brain | 4.90e-07 | 68 |
future brain | 4.90e-07 | 68 |