FFCP PHASE1:Hg19::chr1:3650500..3650504,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr1:3650500..3650504,+ | |||
|coexpression_cluster_id=C99 | |||
|description=CAGE_peak_at_chr1:3650500..3650504,+ | |||
|id=chr1:3650500..3650504,+ | |||
|ontology_enrichment_celltype=CL:0002251!3.53e-07!21 | |||
|ontology_enrichment_celltype_v019=CL:0002623;6.55e-13;3!CL:0000785;2.62e-10;1!CL:0000819;2.62e-10;1!CL:0000622;4.21e-08;5!CL:0002251;1.82e-07;20!CL:0000154;6.88e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002623,8.87e-13,3;CL:0000819,3.96e-10,1;CL:0000622,5.04e-08,5;CL:0002251,2.19e-07,20;CL:0000154,7.98e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0003056;6.55e-13;3!UBERON:0005425;2.62e-10;1 | |||
|ontology_enrichment_disease=DOID:162!2.21e-21!235;DOID:14566!1.87e-20!239;DOID:0050687!1.12e-14!143;DOID:305!1.05e-12!106;DOID:0050686!1.84e-12!137;DOID:0060058!1.76e-08!10 | |||
|ontology_enrichment_disease_v019=DOID:0060060;1.08e-10;1!DOID:0060061;1.08e-10;1!DOID:8691;1.08e-10;1!DOID:0060073;2.62e-10;1!DOID:8675;2.62e-10;1!DOID:0060058;9.70e-09;10!DOID:4362;2.99e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:0060060,1.19e-10,1;DOID:0060061,1.19e-10,1;DOID:8691,1.19e-10,1;DOID:0060073,3.96e-10,1;DOID:8675,3.96e-10,1;DOID:0060058,1.23e-08,10;DOID:4362,2.63e-08,5;DOID:162,3.24e-07,235;DOID:14566,5.21e-07,239 | |||
|ontology_enrichment_uberon=UBERON:0000344!6.11e-09!12;UBERON:0003729!1.20e-08!5;UBERON:0003343!3.53e-07!4;UBERON:0004785!3.53e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;2.62e-10;1!UBERON:0001785;2.62e-10;1!UBERON:0002464;2.62e-10;1!UBERON:0004904;2.62e-10;1!UBERON:0001021;2.62e-10;1!UBERON:0003343;3.70e-10;4!UBERON:0004785;3.70e-10;4!UBERON:0002331;9.70e-09;10!UBERON:0000161;7.51e-08;19!UBERON:0000166;7.51e-08;19!UBERON:0000974;4.73e-07;6!UBERON:0000002;5.17e-07;6!UBERON:0001560;5.17e-07;6!UBERON:0001044;6.88e-07;6!UBERON:0003293;6.88e-07;6!UBERON:0003294;6.88e-07;6!UBERON:0010047;6.88e-07;6!UBERON:0003408;6.88e-07;6!UBERON:0000167;6.88e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,1.73e-10,1;UBERON:0001785,1.73e-10,1;UBERON:0002464,1.73e-10,1;UBERON:0004904,1.73e-10,1;UBERON:0001021,1.73e-10,1;UBERON:0003902,1.73e-10,1;UBERON:0005425,1.73e-10,1;UBERON:0003343,4.76e-10,4;UBERON:0004785,4.76e-10,4;UBERON:0002331,8.96e-09,10;UBERON:0000358,8.96e-09,10;UBERON:0000307,8.96e-09,10;UBERON:0000091,8.96e-09,10;UBERON:0000087,8.96e-09,10;UBERON:0007010,8.96e-09,10;UBERON:0007806,8.96e-09,10;UBERON:0008780,8.96e-09,10;UBERON:0005728,8.96e-09,10;UBERON:0000002,4.66e-07,6;UBERON:0001560,4.66e-07,6;UBERON:0000966,6.48e-07,6;UBERON:0005388,6.48e-07,6;UBERON:0001802,6.48e-07,6;UBERON:0001044,7.98e-07,6;UBERON:0003293,7.98e-07,6;UBERON:0003294,7.98e-07,6;UBERON:0010047,7.98e-07,6;UBERON:0000167,7.98e-07,6;UBERON:0000166,9.99e-07,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0.993374274723366,0.903106483949403,0.550975469195755,0,0,0,0,0,0,0.387336002901508,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0.222820913770347,0,0,0,0,0.260118695119756,0.822189523018381,0.276350017785848,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0,0,0.252320850875628,0,0,0,0,0,0,0,0,0.241011029883482,0.220587945464788,0,0,0.269662616320329,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0.925884451585296,0,0,0,0,0,0,0,0,0.790204397959275,0,0,0,0.297262324577456,0,0,0,0.0895585227028483,0,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0.261435451024901,0.256450125116389,0,0,0,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0.735120647943095,0,0,0,0,0,0.191505370132367,0,0,0,0,0,2.50634477090067,0.50787533340481,0.642352300414798,0.403599414382095,0,0,0,0,0,0,0.556812347790485,0,0.270455678475983,0,0,0,0,0,0.111443384277478,0.284136146806413,0,0,0.307160702099232,0,0,0,0.16480387422676,0,0,0,0.251932747854276,1.32949287252801,0.984678443688556,0,0.359473404589307,0,0,0,0,0,0.969332746095218,0,0,0.260427761085233,0.174919999992391,0,0,0.254253650292766,0.472775363535873,2.75794698593172,0.291604613383254,1.21537496453305,0,0,0,0.221158519862449,0.295547618953547,0,0,1.39423744278603,0.0769502585037971,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18608451472249,1.60633120630454,2.08843899010911,0,0,0,1.094728735294,0.19566461893209,0.242780379534093,0,0,0,0,0.150323419414493,0.103688191397247,0,0,0.313932918407225,0,0,0.138674673013139,0,0.0979923974143777,0,0,0,0,0,0,0,0,0,0,0,0,0.586654148204409,0.0801588202515337,0,0.19980960958213,0,0.343609788497747,0,0,0.124252535565433,1.41416420770077,0.271808412147228,0.418411385249333,0.101998217636322,0,0,0,0,0,22.3454251137417,0,0,0.717873024576814,0.199679000498991,0,0,0,0,0,0,0,0,0.196854963029498,0.0846733320657845,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0,0.575745591958336,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0.13223260174269,0,0,0,0.157204305099666,0,0,0.592834895693833,0.243585196761792,0,0,0,0,0,0.314108192500469,0,0,0.1251909307065,0,0.110929051536852,0,0.553394539744923,0.124980407962107,0,0,0,0.936669811613763,16.0862341758016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0.256241518587947,0,0,0,0,0,0,0,0,0.211312123358627,2.39984875025916,0.320075189082423,0,0,0,0,0,0.127894371303652,0.323474434190045,0.157265941855896,0,0,0.425149840203366,0.495743057036009,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0,1.42769420259154,0.687034029507179,1.06172751012966,3.11828617486854,0.231051332300676,0,0,0,0,0,0,0,0,0.295712172434091,0,0,0,0,0,0,0,1.58284119923659,0.383287282918786,0,0,0,0,0,0.691403925334676,0,0,0,0,0,0.156986185701028,0,0,0,0,0,0,1.10609528212909,0,0.173858272302579,0,0.828864656652147,1.0243108625637,1.38251932362818,0.860454717640555,0,0,0,0.22910686854405,0,0,0.671132590786754,0,0.243835849964539,0,0,0,0,2.57333409808316,0.795803100645473,0.594600453887843,0,0,0.603851374266694,0.0771741581079447,0,0,0,0,0,0,0,0,0,0,1.09935271517422,0.178553938605658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18378979906969,0,0,0,0,0,0,0.476128862927481,0.0645889098360061,0,0,0,0,0.217716747896961,0,0.134704106029175,0.143444410785353,0,0.244209805832924,0,0,0.0898252021065869,0,0,0,0,0,0 | |||
|short_description=p@chr1:3650500..3650504,+ | |||
}} |
Latest revision as of 07:44, 28 July 2015
Short description: | p@chr1:3650500..3650504, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:3650500..3650504, + |
Coexpression cluster: | C99_hairy_mycosis_submaxillary_salivary_cord_kidney_parotid |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
acinar cell of salivary gland | 8.87e-13 | 3 |
B-1 B cell | 3.96e-10 | 1 |
acinar cell | 5.04e-08 | 5 |
epithelial cell of alimentary canal | 2.19e-07 | 20 |
protein secreting cell | 7.98e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 1.73e-10 | 1 |
cranial nerve | 1.73e-10 | 1 |
nerve trunk | 1.73e-10 | 1 |
nerve connecting eye with brain | 1.73e-10 | 1 |
nerve | 1.73e-10 | 1 |
retinal neural layer | 1.73e-10 | 1 |
presumptive neural retina | 1.73e-10 | 1 |
mucosa of oral region | 4.76e-10 | 4 |
respiratory system mucosa | 4.76e-10 | 4 |
umbilical cord | 8.96e-09 | 10 |
blastocyst | 8.96e-09 | 10 |
blastula | 8.96e-09 | 10 |
bilaminar disc | 8.96e-09 | 10 |
inner cell mass | 8.96e-09 | 10 |
cleaving embryo | 8.96e-09 | 10 |
connecting stalk | 8.96e-09 | 10 |
inner cell mass derived epiblast | 8.96e-09 | 10 |
extraembryonic mesoderm | 8.96e-09 | 10 |
uterine cervix | 4.66e-07 | 6 |
neck of organ | 4.66e-07 | 6 |
retina | 6.48e-07 | 6 |
photoreceptor array | 6.48e-07 | 6 |
posterior segment of eyeball | 6.48e-07 | 6 |
saliva-secreting gland | 7.98e-07 | 6 |
gland of oral region | 7.98e-07 | 6 |
gland of foregut | 7.98e-07 | 6 |
oral gland | 7.98e-07 | 6 |
oral cavity | 7.98e-07 | 6 |
oral opening | 9.99e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 1.19e-10 | 1 |
cutaneous T cell lymphoma | 1.19e-10 | 1 |
mycosis fungoides | 1.19e-10 | 1 |
lymphatic system cancer | 3.96e-10 | 1 |
lymphosarcoma | 3.96e-10 | 1 |
lymphoma | 1.23e-08 | 10 |
cervical cancer | 2.63e-08 | 5 |
cancer | 3.24e-07 | 235 |
disease of cellular proliferation | 5.21e-07 | 239 |