FFCP PHASE1:Hg19::chr1:7844242..7844248,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8863 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8847 | |||
|TSSclassifier=strong | |||
|UniProt=Q8TAR6 | |||
|association_with_transcript=-131bp_to_ENST00000377541,uc001aon.2_5end | |||
|cluster_id=chr1:7844242..7844248,+ | |||
|description=CAGE_peak_4_at_PER3_5end | |||
|id=chr1:7844242..7844248,+ | |||
|ontology_enrichment_celltype=CL:0000557!4.00e-18!71;CL:0002009!7.63e-18!65;CL:0002194!4.81e-17!63;CL:0000576!4.81e-17!63;CL:0000040!4.81e-17!63;CL:0000559!4.81e-17!63;CL:0000839!3.72e-16!70;CL:0002057!1.10e-13!42;CL:0000766!1.24e-13!76;CL:0000860!3.00e-13!45;CL:0000763!1.74e-08!112;CL:0000049!1.74e-08!112 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.07e-20;39!CL:0000234;1.07e-20;39!CL:0000860;2.00e-17;33!CL:0002057;2.00e-17;33!CL:0000235;4.68e-12;6!CL:0000766;2.48e-08;69!CL:0000576;8.22e-08;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000557,3.21e-22,67;CL:0002009,5.96e-22,61;CL:0002194,4.20e-21,59;CL:0000576,4.20e-21,59;CL:0000040,4.20e-21,59;CL:0000559,4.20e-21,59;CL:0000473,9.16e-21,48;CL:0000234,9.16e-21,48;CL:0000839,1.84e-19,66;CL:0000766,4.18e-17,72;CL:0000860,1.71e-13,42;CL:0002057,1.71e-13,42;CL:0000235,8.17e-12,6;CL:0000763,2.49e-10,108;CL:0000049,2.49e-10,108;CL:0002031,8.52e-08,120;CL:0002087,5.63e-07,115 | |||
|ontology_enrichment_development_v019=CL:0002057;5.25e-09;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001474!9.79e-15!86;UBERON:0007023!2.39e-14!115;UBERON:0002371!2.62e-14!80;UBERON:0000062!1.85e-13!511;UBERON:0004765!3.05e-13!101;UBERON:0001434!3.05e-13!101;UBERON:0005743!3.41e-13!86;UBERON:0001017!2.50e-12!82;UBERON:0002405!3.77e-12!115;UBERON:0001049!7.06e-12!57;UBERON:0005068!7.06e-12!57;UBERON:0006241!7.06e-12!57;UBERON:0007135!7.06e-12!57;UBERON:0000073!9.20e-12!94;UBERON:0001016!9.20e-12!94;UBERON:0000955!1.98e-11!69;UBERON:0006238!1.98e-11!69;UBERON:0002616!3.84e-10!59;UBERON:0002346!4.10e-10!90;UBERON:0003075!5.41e-10!86;UBERON:0007284!5.41e-10!86;UBERON:0003080!7.89e-10!42;UBERON:0002780!2.33e-09!41;UBERON:0001890!2.33e-09!41;UBERON:0006240!2.33e-09!41;UBERON:0002390!1.43e-08!102;UBERON:0003061!1.43e-08!102;UBERON:0002193!2.60e-08!112;UBERON:0003056!1.43e-07!61;UBERON:0001893!1.87e-07!34;UBERON:0000480!1.96e-07!626;UBERON:0000922!2.01e-07!612;UBERON:0002020!2.10e-07!34;UBERON:0003528!2.10e-07!34;UBERON:0000467!2.11e-07!625;UBERON:0000468!2.16e-07!659;UBERON:0000924!3.42e-07!173;UBERON:0006601!3.42e-07!173;UBERON:0002791!5.00e-07!33;UBERON:0004121!5.23e-07!169 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001474,6.78e-19,82;UBERON:0002371,1.83e-18,76;UBERON:0004765,2.45e-16,90;UBERON:0001434,9.70e-14,100;UBERON:0002405,2.09e-13,93;UBERON:0002390,2.87e-12,98;UBERON:0003061,2.87e-12,98;UBERON:0002193,2.49e-10,108;UBERON:0007023,4.45e-10,114;UBERON:0001049,8.63e-08,56;UBERON:0005068,8.63e-08,56;UBERON:0006241,8.63e-08,56;UBERON:0007135,8.63e-08,56;UBERON:0000073,1.91e-07,53;UBERON:0002616,1.91e-07,53 | |||
|phase1_expression=0,0.642301571672949,0.140954404095971,0,0.446961094427288,0,0,0.631719873426831,0.261185628199839,0,0,0.655324116390517,0.527533956456907,0.37129905888014,0,0.672325146451775,0,0,0,0.246242116153576,0.408001382488506,0,0,0.410623275218653,0.502170558379211,0,0,0,0,0,0.309632246632152,0,0.30120591877825,0,0.232401601740905,0.284338464974843,0,0,0,0.217010870715852,0.223915474239924,2.59114932815184,0.515151135268373,0.290796477559129,1.88937971844405,0.727752183563449,0.464858073811369,3.28934310417461,1.54853185447552,1.1507695692886,0.768482119587302,1.6553756092201,1.72372840368309,1.29096936716765,4.06279459783025,0.188242339542605,0.545812300115692,0.898893937780338,1.53041946185451,1.28371610830437,1.27867425159808,0.659702600373432,0.797854630486527,1.70489900213078,0.290209238628584,2.26954089876456,3.11411124497787,1.50749199154046,2.08593167368081,1.95469960234605,3.63239701580021,1.10483290796269,2.21523671208619,0.422510572623884,0.637812899895131,0.419317291016752,0.112328631146495,0.300353785683013,0.48217676009124,0.855038231223746,0.79566670879636,0.730656615058536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0.443067789167242,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0,0.361439152384566,1.00267582127178,0.144846518960824,0,0.486634870302636,0.567208902984407,0,0.351339142772504,0.785874452986276,0.364295288292542,0.370784442784429,1.29818957461873,1.0447784237956,1.72845348674525,0,0,0,0,0,0,0,0,0.275118041940067,0,0.775250277507987,0.71153252537342,0,0.402829317109147,0,0,0,0,0,0.22452937262617,0.225222960966644,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0.134710672069688,0,0.151357427644931,0,0,0,0,0,0,0,0.140450806702248,0,0.122834317311768,0,0,0.247266929278557,0,0.718618141816238,0,0.125118519871964,0,0,0.30648779579902,0.300476117813194,0.113432183160021,0,0,0,0,0.309157587715317,0.257640540045629,0.18611685633159,0.337552664482532,0.0974370051611986,0.252433774244115,0.276149695926898,0,0.355009592516614,0.10075209822764,0,0,0,0,0.243947412259191,0.265059536642971,0.232387885739037,0.414644220061482,0.252320850875628,0.36497735907583,0,0,0,0,0,0.236613600079688,0,0,0.110293972732394,0.217879444092406,0.474541238222193,0.269662616320329,0,0,0,0,0,0,0,0.982827216677626,0.590789906681404,0,0.614942192715568,0,0.219500570817251,0,0.201057944823262,0,0.325808305310325,0,0,0.231860809950154,0,0.288732895522148,0,0.190254152234598,0,0.858486162094873,1.47730203652438,2.57404691653161,2.22946743433092,0,0.335964256397719,0.283550194484773,0.268675568108545,0,0.766765358330422,0,0.616339038092582,0.829312462163088,0,1.64115163454294,1.26995788584338,0,1.17217447210047,0,0.514137463516618,0.901029173531752,0,0,0,0,0.129271715757778,0,0,0,0,0.257207374262142,0,0.266422179016099,0.142977993658148,0,0,0,0.710783897485092,0,0.301439377059586,0,0,2.43247561282381,1.00451418286425,2.10833939483032,0,0,0,0,0,0,0,0.197030760201927,0.215627574859517,0.256686072559497,1.01637849688985,1.30139853857622,0,0.167516265334349,0.637938751653163,0.749007023947182,0,0,0,0,0.271265023699736,0,0,0.157702415033935,0.234282829985426,0,2.27407504055985,0,0,0.184369168541703,0.434418072340414,0.391602314925481,0.343143423810856,0,0,0,1.81876542867756,0,0.604780586659361,0,0,0,0,0,0.160853921143607,0,0.308419387605311,0,0.164254312027618,0.519254429183621,0.116210378459959,0.483437798366489,0.200506470303285,0.368323955743585,0,0,0.131124414959424,0,0.231046011313244,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0.769350375349168,0.328014645699706,0.325378394664303,0.824328093181778,1.19040304263846,1.40266149865,0,0.650060246036521,0,0.290012154876366,0.308097234229289,0.15350367472613,0.689182862422653,0,0.145016693914229,0.0852266274161009,0.267096106940212,0,0,0,0.2023155617111,0,0,0,0,0,0,0,0.286249773483982,0,0.949138274156178,0,0,0,0,0,0.179872457583315,0,0.117812402345686,0,0,0,0,0,0,0.272999822815972,0,0,0,0,0,0,0,0.202910376962704,0.30982349809975,0,0,0.196498082026242,0,0,0.422215270595328,0.987884678879706,0,0,0,0,0,1.12972560932135,0,0,0,0,0,0,0,0,0,0,0,0,1.1750647824022,0,0,0.185803175125719,0.144269212976445,0,0,0,0,0.211673582723883,0,0.842391534340376,0.228234679033192,0,0,0,0,0,0,0.343505344755765,0.614481528616916,0.223676107892416,0.500547425135725,0.19538809540204,0,0,0.270455678475983,0.33307196799782,0,0,0.146508179271894,0.606802608747567,0.111443384277478,0.284136146806413,5.01363417949149,1.78178808499583,11.3649459776716,0,0.844016498463076,0.333926115068718,0,2.53350489753592,0.597743964753209,0.276283915531148,0,0.306806047506464,0.246169610922139,0,0.449341755736634,0.179021174675609,0.511572370226872,0.591860433821602,0,0,0.969332746095218,0.74214478529481,0,0.520855522170466,0.174919999992391,1.44999915086959,0.1137934482855,0.508507300585533,0.709163045303809,1.72371686620732,0.291604613383254,0.347249989866585,0.885741385813839,0.844175070377856,0,0.774054819518572,0.295547618953547,1.53569778007781,0.980446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| |||
|short_description=p4@PER3 | |||
}} |
Latest revision as of 07:56, 19 September 2015
Short description: | p4@PER3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_PER3_5end |
Coexpression cluster: | NA |
Association with transcript: | -131bp_to_ENST00000377541, uc001aon.2_5end |
EntrezGene: | PER3 |
HGNC: | 8847 |
UniProt: | Q8TAR6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte monocyte progenitor cell | 3.21e-22 | 67 |
macrophage dendritic cell progenitor | 5.96e-22 | 61 |
monopoietic cell | 4.20e-21 | 59 |
monocyte | 4.20e-21 | 59 |
monoblast | 4.20e-21 | 59 |
promonocyte | 4.20e-21 | 59 |
defensive cell | 9.16e-21 | 48 |
phagocyte | 9.16e-21 | 48 |
myeloid lineage restricted progenitor cell | 1.84e-19 | 66 |
myeloid leukocyte | 4.18e-17 | 72 |
classical monocyte | 1.71e-13 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.71e-13 | 42 |
macrophage | 8.17e-12 | 6 |
myeloid cell | 2.49e-10 | 108 |
common myeloid progenitor | 2.49e-10 | 108 |
hematopoietic lineage restricted progenitor cell | 8.52e-08 | 120 |
nongranular leukocyte | 5.63e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
bone element | 6.78e-19 | 82 |
bone marrow | 1.83e-18 | 76 |
skeletal element | 2.45e-16 | 90 |
skeletal system | 9.70e-14 | 100 |
immune system | 2.09e-13 | 93 |
hematopoietic system | 2.87e-12 | 98 |
blood island | 2.87e-12 | 98 |
hemolymphoid system | 2.49e-10 | 108 |
adult organism | 4.45e-10 | 114 |
neural tube | 8.63e-08 | 56 |
neural rod | 8.63e-08 | 56 |
future spinal cord | 8.63e-08 | 56 |
neural keel | 8.63e-08 | 56 |
regional part of nervous system | 1.91e-07 | 53 |
regional part of brain | 1.91e-07 | 53 |