FFCP PHASE1:Mm9::chr11:69794744..69794766,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=54351|HGNC=|MCL_coexpression_id=7|UniProt=Q99L85|association_with_transcript=0bp_to_ENSMUST00000108594_5end|description=CAGE_peak_5_at_Rai12_5end|id=chr11:69794744..69794766,-|ontology_enrichment_celltype=CL:0000988!1.55e-09!32;CL:0002032!1.55e-09!32;CL:0000037!1.55e-09!32;CL:0000566!1.55e-09!32;CL:0000837!1.55e-09!32;CL:0000791!3.51e-08!9;CL:0000789!3.51e-08!9;CL:0002420!3.51e-08!9;CL:0002419!3.51e-08!9;CL:0000790!3.51e-08!9;CL:0000838!8.79e-08!12;CL:0000624!1.62e-07!8;CL:0000084!4.43e-07!11;CL:0000827!4.43e-07!11;CL:0002320!5.27e-07!46;CL:0000134!5.27e-07!46;CL:0002031!6.72e-07!25;CL:0000542!8.97e-07!13;CL:0000051!8.97e-07!13|ontology_enrichment_celltype_v019_2=CL:0000988,2.56e-32,32;CL:0002032,2.56e-32,32;CL:0000037,2.56e-32,32;CL:0000837,2.56e-32,32;CL:0000791,3.85e-28,9;CL:0000789,3.85e-28,9;CL:0002420,3.85e-28,9;CL:0002419,3.85e-28,9;CL:0000790,3.85e-28,9;CL:0002031,4.31e-26,25;CL:0000838,1.54e-25,12;CL:0000624,1.81e-25,8;CL:0000738,3.62e-25,17;CL:0002087,3.62e-25,17;CL:0000542,1.97e-23,13;CL:0000051,1.97e-23,13;CL:0000084,9.64e-23,11;CL:0000827,9.64e-23,11;CL:0002320,2.76e-21,46;CL:0000134,2.76e-21,46;CL:0000893,1.27e-19,6;CL:0002489,1.27e-19,6;CL:0000898,1.27e-19,6;CL:0000809,1.27e-19,6;CL:0000810,1.27e-19,6;CL:0000895,1.27e-19,6;CL:0000808,1.27e-19,6;CL:0000894,1.27e-19,6;CL:0000806,1.27e-19,6;CL:0000807,1.27e-19,6;CL:0000805,1.27e-19,6;CL:0002425,1.27e-19,6;CL:0002436,1.27e-19,6;CL:0002427,1.27e-19,6;CL:0002428,1.27e-19,6;CL:0002429,1.27e-19,6;CL:0002433,1.27e-19,6;CL:0002431,1.27e-19,6;CL:0002432,1.27e-19,6;CL:0000219,1.52e-17,54;CL:0000034,4.92e-13,97;CL:0000049,7.35e-12,19;CL:0000723,6.50e-10,91;CL:0000048,6.50e-10,91;CL:0002476,3.99e-07,2|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!2.74e-15!48;UBERON:0002390!1.19e-13!45;UBERON:0003061!1.19e-13!45;UBERON:0002405!3.38e-11!70;UBERON:0004177!6.49e-10!29;UBERON:0003081!1.63e-08!88;UBERON:0003408!8.09e-08!24;UBERON:0002370!2.99e-07!23;UBERON:0000974!2.99e-07!23;UBERON:0004807!2.99e-07!23;UBERON:0005058!2.99e-07!23;UBERON:0003351!2.99e-07!23;UBERON:0009113!2.99e-07!23;UBERON:0003295!2.99e-07!23;UBERON:0009722!2.99e-07!23;UBERON:0005562!2.99e-07!23;UBERON:0007690!2.99e-07!23;UBERON:0002384!5.27e-07!46|ontology_enrichment_uberon_v019_2=UBERON:0002384,2.76e-21,46;UBERON:0002193,1.81e-13,48;UBERON:0002405,1.81e-13,48;UBERON:0002390,1.27e-12,45;UBERON:0003061,1.27e-12,45;UBERON:0003408,3.43e-09,24;UBERON:0002370,1.01e-07,23;UBERON:0000974,1.01e-07,23;UBERON:0004807,1.01e-07,23;UBERON:0005058,1.01e-07,23;UBERON:0003351,1.01e-07,23;UBERON:0009113,1.01e-07,23;UBERON:0003295,1.01e-07,23;UBERON:0009722,1.01e-07,23;UBERON:0005562,1.01e-07,23;UBERON:0007690,1.01e-07,23;UBERON:0006562,2.39e-07,24;UBERON:0001557,2.39e-07,24;UBERON:0001042,2.39e-07,24;UBERON:0008814,2.39e-07,24;UBERON:0009145,2.39e-07,24;UBERON:0004177,2.44e-07,29;UBERON:0005057,2.44e-07,29|phase1_expression=0,0,0,0,0,0,0.233612640595526,4.00282302668886,19.2880549347783,18.9592266320815,10.7867319982068,13.3219505522212,1.71200729931206,1.39872643870396,0.333109761815663,0.404950534779652,0,3.15462165358238,3.01651753932625,2.12194825899015,0.17008658030214,0.297872853602656,0,0.799962113967033,0.45881856213434,0.57423196411502,0,0,0,0,0.443461021310609,0,0,0,0,0,0.204169356262369,0.418531630736908,0,0.523523743973798,0.588231488031014,0,0,0.251793635951155,0.202753862439029,0.183546752161682,0,0.218025156380447,0,0.194429899074283,0,0,2.51673909086605,2.17608642603403,1.68046899571232,0.257259436035947,0,0,0,0,0,0,0,0.899899717281399,0,0.7104801149461,0,0,0.103689612308478,0.135005938331691,0,0.285650984403804,0.220868540951614,0,0.0958454710182364,0,1.10115880999389,0.127687338085188,0.153606533256243,0,0,0,0.279182999001381,0,0.30559649555362,0,0.142371680799103,0,0.681535739998656,0.151143120213571,0.289864488701678,0.860423876981386,0.679971333707751,0,0,0,0.140444420131752,0,0,0,0.281686839553361,1.28326477414318,0,0,0.432982082022428,0,0,0.11418387971906,2.58937883647172,0.29688427812965,0,0,0,0,0.23517741427141,0,0,0.144599356919912,0,0.647067399789637,0.662524555381181,0,0,0,0.209446706813455,0,3.59445373517761,1.79970819298022,2.41433431438823,0,0,0,0.521472960576829,0.511430914660661,0.41557608911912,0.324482526135515,0.101839363850316,0.373220911830279,0.252722758433675,0,0.390361328888111,0.229902104433473,0.360124259610698,0,0.0680364991513279,0,0,0,0.215567992932842,0,0.175951124163949,0.219195732427575,0,0.348252166522167,0,0,0.702213187313235,0.51469581422943,1.13665399758237,0,0,0,0,0.196764231747404,0,0,0,0,0,0.985004784474571,0.162137619091711,0.146199987425332,0.219550115291051,0,0,0,0,0,0,0,0,0,0,0.380451252225118,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189709611372772,0,0.156998727841375,0.123397163921801,0.296452627087149,0.166845105716094,0.196558995113203,0,0,0,0.25462585178142,0.287696137450811,0,0.274561413188081,0,0,0,0.252578877947112,0,0,0,0,0,0.339490171550376,0,0.167506257441816,0,0.195133647857799,0.472905432318573,0,0,0.163863314715738,0.690739927463582,0.289298117163023,1.50791283939272,2.71952841909355,0.491764273019036,0.551873492609465,0.160550589987792,0,0.163934945376675,0,0,0,0,0,0.445597348164788,0,0,0,0,0,0,0,0.162886959353576,0,0,0,0,0,0,0,0.258428293168221,0.363533729477506,0,0.316036757935816,0,0,0.680879211507576,0,0.129358683782755,0,0,0,0.164549020602121,0,0,0.21183207086382,0.220528398054962,0.16488625294148,0.161464426695906,0,0.119372344003136,0.164140899745061,0,0,0.683483523191411,0.206386867963223,0.555583582109135,0.941842285023455,0.956859594047176,1.14389086603261,4.07948231985253,3.77868921273877,4.28419918793714,0,0,0.203319467126849,0.108005340821801,0.209088296014469,0.218362563746178,0.134864346384821,0,0,0,1.24267862617385,0,0.149516546043979,0,0,0.258319646955462,0,0.117357238645754,0.13020438484395,0.314578033277133,0.241584120826006,0,0.948033361884535,0,0.308132871494482,0.129920822977795,0.179026695667481,0,1.08175904567972,0.738447635872886,0.302899349844443,0.457240839929999,0.907435666231565,0.682205165178267,0.577271049841977,0.584384510907845,0,0,0,0,0,0.187682475451182,0.183151624267265,0,0,0.564751842617067,0.460325236507177,0.572895513439397,0.343706364687375,1.37016503954128,0,0.675022500231806,0,0.453142408984205,0,0.103787347584177,0,0,0,0.209613162627982,0.367687016900028,0,0.206035057238894,0,0.252697211763798,0,0.188626341386076,0.0936415074698824,0,0,0.476293691283074,0,0.192909220463705,0,0.147198920134397,0,0.177475806159338,0.476872379894642,0,0.0941093804153306,0,0,0,0,0,0,0,0,0,0,0,0.467863216890817,0,0.191288332068843,0,0.695603506861264|short_description=p5@Rai12}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=54351 | |||
|HGNC= | |||
|MCL_coexpression_id=7 | |||
|TSSclassifier=NA | |||
|UniProt=Q99L85 | |||
|association_with_transcript=0bp_to_ENSMUST00000108594_5end | |||
|cluster_id=chr11:69794744..69794766,- | |||
|description=CAGE_peak_5_at_Rai12_5end | |||
|id=chr11:69794744..69794766,- | |||
|ontology_enrichment_celltype=CL:0000988!1.55e-09!32;CL:0002032!1.55e-09!32;CL:0000037!1.55e-09!32;CL:0000566!1.55e-09!32;CL:0000837!1.55e-09!32;CL:0000791!3.51e-08!9;CL:0000789!3.51e-08!9;CL:0002420!3.51e-08!9;CL:0002419!3.51e-08!9;CL:0000790!3.51e-08!9;CL:0000838!8.79e-08!12;CL:0000624!1.62e-07!8;CL:0000084!4.43e-07!11;CL:0000827!4.43e-07!11;CL:0002320!5.27e-07!46;CL:0000134!5.27e-07!46;CL:0002031!6.72e-07!25;CL:0000542!8.97e-07!13;CL:0000051!8.97e-07!13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,2.56e-32,32;CL:0002032,2.56e-32,32;CL:0000037,2.56e-32,32;CL:0000837,2.56e-32,32;CL:0000791,3.85e-28,9;CL:0000789,3.85e-28,9;CL:0002420,3.85e-28,9;CL:0002419,3.85e-28,9;CL:0000790,3.85e-28,9;CL:0002031,4.31e-26,25;CL:0000838,1.54e-25,12;CL:0000624,1.81e-25,8;CL:0000738,3.62e-25,17;CL:0002087,3.62e-25,17;CL:0000542,1.97e-23,13;CL:0000051,1.97e-23,13;CL:0000084,9.64e-23,11;CL:0000827,9.64e-23,11;CL:0002320,2.76e-21,46;CL:0000134,2.76e-21,46;CL:0000893,1.27e-19,6;CL:0002489,1.27e-19,6;CL:0000898,1.27e-19,6;CL:0000809,1.27e-19,6;CL:0000810,1.27e-19,6;CL:0000895,1.27e-19,6;CL:0000808,1.27e-19,6;CL:0000894,1.27e-19,6;CL:0000806,1.27e-19,6;CL:0000807,1.27e-19,6;CL:0000805,1.27e-19,6;CL:0002425,1.27e-19,6;CL:0002436,1.27e-19,6;CL:0002427,1.27e-19,6;CL:0002428,1.27e-19,6;CL:0002429,1.27e-19,6;CL:0002433,1.27e-19,6;CL:0002431,1.27e-19,6;CL:0002432,1.27e-19,6;CL:0000219,1.52e-17,54;CL:0000034,4.92e-13,97;CL:0000049,7.35e-12,19;CL:0000723,6.50e-10,91;CL:0000048,6.50e-10,91;CL:0002476,3.99e-07,2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!2.74e-15!48;UBERON:0002390!1.19e-13!45;UBERON:0003061!1.19e-13!45;UBERON:0002405!3.38e-11!70;UBERON:0004177!6.49e-10!29;UBERON:0003081!1.63e-08!88;UBERON:0003408!8.09e-08!24;UBERON:0002370!2.99e-07!23;UBERON:0000974!2.99e-07!23;UBERON:0004807!2.99e-07!23;UBERON:0005058!2.99e-07!23;UBERON:0003351!2.99e-07!23;UBERON:0009113!2.99e-07!23;UBERON:0003295!2.99e-07!23;UBERON:0009722!2.99e-07!23;UBERON:0005562!2.99e-07!23;UBERON:0007690!2.99e-07!23;UBERON:0002384!5.27e-07!46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,2.76e-21,46;UBERON:0002193,1.81e-13,48;UBERON:0002405,1.81e-13,48;UBERON:0002390,1.27e-12,45;UBERON:0003061,1.27e-12,45;UBERON:0003408,3.43e-09,24;UBERON:0002370,1.01e-07,23;UBERON:0000974,1.01e-07,23;UBERON:0004807,1.01e-07,23;UBERON:0005058,1.01e-07,23;UBERON:0003351,1.01e-07,23;UBERON:0009113,1.01e-07,23;UBERON:0003295,1.01e-07,23;UBERON:0009722,1.01e-07,23;UBERON:0005562,1.01e-07,23;UBERON:0007690,1.01e-07,23;UBERON:0006562,2.39e-07,24;UBERON:0001557,2.39e-07,24;UBERON:0001042,2.39e-07,24;UBERON:0008814,2.39e-07,24;UBERON:0009145,2.39e-07,24;UBERON:0004177,2.44e-07,29;UBERON:0005057,2.44e-07,29 | |||
|phase1_expression=0,0,0,0,0,0,0.233612640595526,4.00282302668886,19.2880549347783,18.9592266320815,10.7867319982068,13.3219505522212,1.71200729931206,1.39872643870396,0.333109761815663,0.404950534779652,0,3.15462165358238,3.01651753932625,2.12194825899015,0.17008658030214,0.297872853602656,0,0.799962113967033,0.45881856213434,0.57423196411502,0,0,0,0,0.443461021310609,0,0,0,0,0,0.204169356262369,0.418531630736908,0,0.523523743973798,0.588231488031014,0,0,0.251793635951155,0.202753862439029,0.183546752161682,0,0.218025156380447,0,0.194429899074283,0,0,2.51673909086605,2.17608642603403,1.68046899571232,0.257259436035947,0,0,0,0,0,0,0,0.899899717281399,0,0.7104801149461,0,0,0.103689612308478,0.135005938331691,0,0.285650984403804,0.220868540951614,0,0.0958454710182364,0,1.10115880999389,0.127687338085188,0.153606533256243,0,0,0,0.279182999001381,0,0.30559649555362,0,0.142371680799103,0,0.681535739998656,0.151143120213571,0.289864488701678,0.860423876981386,0.679971333707751,0,0,0,0.140444420131752,0,0,0,0.281686839553361,1.28326477414318,0,0,0.432982082022428,0,0,0.11418387971906,2.58937883647172,0.29688427812965,0,0,0,0,0.23517741427141,0,0,0.144599356919912,0,0.647067399789637,0.662524555381181,0,0,0,0.209446706813455,0,3.59445373517761,1.79970819298022,2.41433431438823,0,0,0,0.521472960576829,0.511430914660661,0.41557608911912,0.324482526135515,0.101839363850316,0.373220911830279,0.252722758433675,0,0.390361328888111,0.229902104433473,0.360124259610698,0,0.0680364991513279,0,0,0,0.215567992932842,0,0.175951124163949,0.219195732427575,0,0.348252166522167,0,0,0.702213187313235,0.51469581422943,1.13665399758237,0,0,0,0,0.196764231747404,0,0,0,0,0,0.985004784474571,0.162137619091711,0.146199987425332,0.219550115291051,0,0,0,0,0,0,0,0,0,0,0.380451252225118,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189709611372772,0,0.156998727841375,0.123397163921801,0.296452627087149,0.166845105716094,0.196558995113203,0,0,0,0.25462585178142,0.287696137450811,0,0.274561413188081,0,0,0,0.252578877947112,0,0,0,0,0,0.339490171550376,0,0.167506257441816,0,0.195133647857799,0.472905432318573,0,0,0.163863314715738,0.690739927463582,0.289298117163023,1.50791283939272,2.71952841909355,0.491764273019036,0.551873492609465,0.160550589987792,0,0.163934945376675,0,0,0,0,0,0.445597348164788,0,0,0,0,0,0,0,0.162886959353576,0,0,0,0,0,0,0,0.258428293168221,0.363533729477506,0,0.316036757935816,0,0,0.680879211507576,0,0.129358683782755,0,0,0,0.164549020602121,0,0,0.21183207086382,0.220528398054962,0.16488625294148,0.161464426695906,0,0.119372344003136,0.164140899745061,0,0,0.683483523191411,0.206386867963223,0.555583582109135,0.941842285023455,0.956859594047176,1.14389086603261,4.07948231985253,3.77868921273877,4.28419918793714,0,0,0.203319467126849,0.108005340821801,0.209088296014469,0.218362563746178,0.134864346384821,0,0,0,1.24267862617385,0,0.149516546043979,0,0,0.258319646955462,0,0.117357238645754,0.13020438484395,0.314578033277133,0.241584120826006,0,0.948033361884535,0,0.308132871494482,0.129920822977795,0.179026695667481,0,1.08175904567972,0.738447635872886,0.302899349844443,0.457240839929999,0.907435666231565,0.682205165178267,0.577271049841977,0.584384510907845,0,0,0,0,0,0.187682475451182,0.183151624267265,0,0,0.564751842617067,0.460325236507177,0.572895513439397,0.343706364687375,1.37016503954128,0,0.675022500231806,0,0.453142408984205,0,0.103787347584177,0,0,0,0.209613162627982,0.367687016900028,0,0.206035057238894,0,0.252697211763798,0,0.188626341386076,0.0936415074698824,0,0,0.476293691283074,0,0.192909220463705,0,0.147198920134397,0,0.177475806159338,0.476872379894642,0,0.0941093804153306,0,0,0,0,0,0,0,0,0,0,0,0.467863216890817,0,0.191288332068843,0,0.695603506861264 | |||
|short_description=p5@Rai12 | |||
}} |
Latest revision as of 14:01, 25 September 2015
Short description: | p5@Rai12 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Rai12_5end |
Coexpression cluster: | MCL_coexpression_mm9:7 |
Association with transcript: | 0bp_to_ENSMUST00000108594_5end |
EntrezGene: | Rai12 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
connective tissue | 2.76e-21 | 46 |
hemolymphoid system | 1.81e-13 | 48 |
immune system | 1.81e-13 | 48 |
hematopoietic system | 1.27e-12 | 45 |
blood island | 1.27e-12 | 45 |
gland of gut | 3.43e-09 | 24 |
thymus | 1.01e-07 | 23 |
neck | 1.01e-07 | 23 |
respiratory system epithelium | 1.01e-07 | 23 |
hemolymphoid system gland | 1.01e-07 | 23 |
pharyngeal epithelium | 1.01e-07 | 23 |
thymic region | 1.01e-07 | 23 |
pharyngeal gland | 1.01e-07 | 23 |
entire pharyngeal arch endoderm | 1.01e-07 | 23 |
thymus primordium | 1.01e-07 | 23 |
early pharyngeal endoderm | 1.01e-07 | 23 |
pharynx | 2.39e-07 | 24 |
upper respiratory tract | 2.39e-07 | 24 |
chordate pharynx | 2.39e-07 | 24 |
pharyngeal arch system | 2.39e-07 | 24 |
pharyngeal region of foregut | 2.39e-07 | 24 |
hemopoietic organ | 2.44e-07 | 29 |
immune organ | 2.44e-07 | 29 |