FFCP PHASE1:Mm9::chr12:73187080..73187134,+: Difference between revisions
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{{FFCP|EntrezGene=104771|HGNC=|MCL_coexpression_id=937|UniProt=Q8BI36|association_with_transcript=0bp_to_uc007nvf.1,uc007nvg.1_5end|description=CAGE_peak_1_at_Jkamp_5end|id=chr12:73187080..73187134,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!1.38e-21!71;UBERON:0003075!1.38e-21!71;UBERON:0007284!1.38e-21!71;UBERON:0004111!2.23e-21!122;UBERON:0000025!2.29e-20!114;UBERON:0004121!2.54e-19!102;UBERON:0000924!2.54e-19!102;UBERON:0006601!2.54e-19!102;UBERON:0000033!2.62e-18!63;UBERON:0000955!4.64e-16!50;UBERON:0006238!4.64e-16!50;UBERON:0001017!9.96e-16!73;UBERON:0005743!9.96e-16!73;UBERON:0000073!1.01e-15!75;UBERON:0001016!1.01e-15!75;UBERON:0001049!1.36e-15!52;UBERON:0005068!1.36e-15!52;UBERON:0006241!1.36e-15!52;UBERON:0007135!1.36e-15!52;UBERON:0002616!2.03e-15!49;UBERON:0003056!1.62e-14!49;UBERON:0003080!1.10e-12!40;UBERON:0002780!4.70e-12!39;UBERON:0001890!4.70e-12!39;UBERON:0006240!4.70e-12!39;UBERON:0002020!1.44e-09!34;UBERON:0000475!4.48e-09!200;UBERON:0002791!1.88e-08!29;UBERON:0003528!1.88e-08!29;UBERON:0001893!1.88e-08!29;UBERON:0000468!1.92e-08!333;UBERON:0000923!3.18e-08!314;UBERON:0005291!3.18e-08!314;UBERON:0006598!3.18e-08!314;UBERON:0002532!3.18e-08!314;UBERON:0000483!3.75e-08!181;UBERON:0000480!4.45e-08!308;UBERON:0000467!4.45e-08!308;UBERON:0002050!1.55e-07!317;UBERON:0005423!1.55e-07!317;UBERON:0000119!1.56e-07!183;UBERON:0000477!2.39e-07!154;UBERON:0002021!2.60e-07!10;UBERON:0000411!2.60e-07!10;UBERON:0001950!2.60e-07!10;UBERON:0000062!8.91e-07!269|ontology_enrichment_uberon_v019_2=UBERON:0010314,2.36e-25,92;UBERON:0004111,2.23e-21,122;UBERON:0000025,2.29e-20,114;UBERON:0002346,2.35e-18,64;UBERON:0003075,2.35e-18,64;UBERON:0007284,2.35e-18,64;UBERON:0000073,1.13e-16,54;UBERON:0004121,3.23e-16,95;UBERON:0000924,3.23e-16,95;UBERON:0006601,3.23e-16,95;UBERON:0010371,4.80e-16,73;UBERON:0001017,9.96e-16,73;UBERON:0001016,1.01e-15,75;UBERON:0001049,1.36e-15,52;UBERON:0005068,1.36e-15,52;UBERON:0006241,1.36e-15,52;UBERON:0007135,1.36e-15,52;UBERON:0003056,1.62e-14,49;UBERON:0000955,2.01e-14,47;UBERON:0006238,2.01e-14,47;UBERON:0002616,8.45e-14,46;UBERON:0003080,1.10e-12,40;UBERON:0002780,4.69e-12,39;UBERON:0001890,4.69e-12,39;UBERON:0006240,4.69e-12,39;UBERON:0002020,1.44e-09,34;UBERON:0003528,1.88e-08,29;UBERON:0002791,1.88e-08,29;UBERON:0001893,1.88e-08,29;UBERON:0002021,2.60e-07,10;UBERON:0000411,2.60e-07,10;UBERON:0001950,2.60e-07,10;UBERON:0005423,4.63e-07,304|phase1_expression=11.2104192973356,3.83872948403297,5.45999087267443,1.51232105653415,1.50268718983904,2.18243053485457,2.33612640595526,6.19791952519566,0.703943610758334,0.468129052643987,4.10923123741212,3.74929147278081,3.93761678841773,5.15780374272085,0.999329285446988,1.21485160433896,1.39912375625629,4.73193248037357,4.11343300817216,1.27316895539409,10.970584429488,4.56738375524072,7.31359409589019,5.11975752938901,7.34109699414944,4.01962374880514,2.58457197695445,2.58565479223067,8.36103045608045,6.5527833737582,7.31710685162506,0.635030673459631,0,0,2.02196133825892,4.82080471539628,2.6542016314108,5.85944283031671,6.2506827561904,5.23523743973798,6.47054636834116,2.73218193983378,5.82612423637384,10.1976422560218,11.6583470902442,9.36088436024576,5.47673941043627,7.19483016055474,8.34807494390993,10.1103547518627,8.11921245427103,8.62515386189829,1.00669563634642,0.725362142011344,2.01656279485478,5.40244815675489,9.45560351797897,14.4388185837684,9.5088736604011,8.46385566835253,5.07065122804943,5.08266798103698,1.77858959222228,4.49949858640699,1.97773272513395,2.1314403448383,4.19440154725767,4.99483796918021,10.2652716185393,9.85543349821342,8.83364837675805,10.8547374073445,13.9147180799517,8.57435594504678,8.81778333367775,3.67687514644008,18.7196997698961,19.1531007127782,24.1162257212302,8.70449499019279,12.4423195299277,13.022834263919,20.1011759280994,22.5105044012672,24.7533161398432,11.490514833473,15.5185132071022,13.9799584368975,7.34544075331885,14.2074533000757,14.4932244350839,18.0689014166091,2.719885334831,11.873470216032,21.4426217757731,18.3691023709908,12.2186645514624,10.3962496772615,14.2882302531578,7.0667914902068,12.6759077799012,2.56652954828636,0,0,8.01016851741492,6.84071636782766,9.0994400102661,9.93399753555822,7.76813650941515,19.1490359393624,11.450031566565,16.1366703505435,14.5287763271317,18.0867168663147,17.4031286560843,22.4943198480119,10.6293836125781,17.0627241165496,7.07688441559899,9.70601099684455,6.18356251689102,8.24287930329878,7.45567044872489,22.2513405728776,19.8974371472782,5.62005521458901,2.27648736561249,2.39961092397363,1.27070227073065,28.4602214869163,20.1300265240196,13.4450156760765,31.462201954802,23.2701066170601,32.2071469067318,27.7432559845866,10.5912938404329,7.96204611904595,14.9106427475868,18.9397670297827,11.0602376518298,9.65588838620586,11.343914177737,10.0972227949929,11.1579858608178,14.7330778327577,15.8355914505942,19.144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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=104771 | |||
|HGNC= | |||
|MCL_coexpression_id=937 | |||
|TSSclassifier=NA | |||
|UniProt=Q8BI36 | |||
|association_with_transcript=0bp_to_uc007nvf.1,uc007nvg.1_5end | |||
|cluster_id=chr12:73187080..73187134,+ | |||
|description=CAGE_peak_1_at_Jkamp_5end | |||
|id=chr12:73187080..73187134,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!1.38e-21!71;UBERON:0003075!1.38e-21!71;UBERON:0007284!1.38e-21!71;UBERON:0004111!2.23e-21!122;UBERON:0000025!2.29e-20!114;UBERON:0004121!2.54e-19!102;UBERON:0000924!2.54e-19!102;UBERON:0006601!2.54e-19!102;UBERON:0000033!2.62e-18!63;UBERON:0000955!4.64e-16!50;UBERON:0006238!4.64e-16!50;UBERON:0001017!9.96e-16!73;UBERON:0005743!9.96e-16!73;UBERON:0000073!1.01e-15!75;UBERON:0001016!1.01e-15!75;UBERON:0001049!1.36e-15!52;UBERON:0005068!1.36e-15!52;UBERON:0006241!1.36e-15!52;UBERON:0007135!1.36e-15!52;UBERON:0002616!2.03e-15!49;UBERON:0003056!1.62e-14!49;UBERON:0003080!1.10e-12!40;UBERON:0002780!4.70e-12!39;UBERON:0001890!4.70e-12!39;UBERON:0006240!4.70e-12!39;UBERON:0002020!1.44e-09!34;UBERON:0000475!4.48e-09!200;UBERON:0002791!1.88e-08!29;UBERON:0003528!1.88e-08!29;UBERON:0001893!1.88e-08!29;UBERON:0000468!1.92e-08!333;UBERON:0000923!3.18e-08!314;UBERON:0005291!3.18e-08!314;UBERON:0006598!3.18e-08!314;UBERON:0002532!3.18e-08!314;UBERON:0000483!3.75e-08!181;UBERON:0000480!4.45e-08!308;UBERON:0000467!4.45e-08!308;UBERON:0002050!1.55e-07!317;UBERON:0005423!1.55e-07!317;UBERON:0000119!1.56e-07!183;UBERON:0000477!2.39e-07!154;UBERON:0002021!2.60e-07!10;UBERON:0000411!2.60e-07!10;UBERON:0001950!2.60e-07!10;UBERON:0000062!8.91e-07!269 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,2.36e-25,92;UBERON:0004111,2.23e-21,122;UBERON:0000025,2.29e-20,114;UBERON:0002346,2.35e-18,64;UBERON:0003075,2.35e-18,64;UBERON:0007284,2.35e-18,64;UBERON:0000073,1.13e-16,54;UBERON:0004121,3.23e-16,95;UBERON:0000924,3.23e-16,95;UBERON:0006601,3.23e-16,95;UBERON:0010371,4.80e-16,73;UBERON:0001017,9.96e-16,73;UBERON:0001016,1.01e-15,75;UBERON:0001049,1.36e-15,52;UBERON:0005068,1.36e-15,52;UBERON:0006241,1.36e-15,52;UBERON:0007135,1.36e-15,52;UBERON:0003056,1.62e-14,49;UBERON:0000955,2.01e-14,47;UBERON:0006238,2.01e-14,47;UBERON:0002616,8.45e-14,46;UBERON:0003080,1.10e-12,40;UBERON:0002780,4.69e-12,39;UBERON:0001890,4.69e-12,39;UBERON:0006240,4.69e-12,39;UBERON:0002020,1.44e-09,34;UBERON:0003528,1.88e-08,29;UBERON:0002791,1.88e-08,29;UBERON:0001893,1.88e-08,29;UBERON:0002021,2.60e-07,10;UBERON:0000411,2.60e-07,10;UBERON:0001950,2.60e-07,10;UBERON:0005423,4.63e-07,304 | |||
|phase1_expression=11.2104192973356,3.83872948403297,5.45999087267443,1.51232105653415,1.50268718983904,2.18243053485457,2.33612640595526,6.19791952519566,0.703943610758334,0.468129052643987,4.10923123741212,3.74929147278081,3.93761678841773,5.15780374272085,0.999329285446988,1.21485160433896,1.39912375625629,4.73193248037357,4.11343300817216,1.27316895539409,10.970584429488,4.56738375524072,7.31359409589019,5.11975752938901,7.34109699414944,4.01962374880514,2.58457197695445,2.58565479223067,8.36103045608045,6.5527833737582,7.31710685162506,0.635030673459631,0,0,2.02196133825892,4.82080471539628,2.6542016314108,5.85944283031671,6.2506827561904,5.23523743973798,6.47054636834116,2.73218193983378,5.82612423637384,10.1976422560218,11.6583470902442,9.36088436024576,5.47673941043627,7.19483016055474,8.34807494390993,10.1103547518627,8.11921245427103,8.62515386189829,1.00669563634642,0.725362142011344,2.01656279485478,5.40244815675489,9.45560351797897,14.4388185837684,9.5088736604011,8.46385566835253,5.07065122804943,5.08266798103698,1.77858959222228,4.49949858640699,1.97773272513395,2.1314403448383,4.19440154725767,4.99483796918021,10.2652716185393,9.85543349821342,8.83364837675805,10.8547374073445,13.9147180799517,8.57435594504678,8.81778333367775,3.67687514644008,18.7196997698961,19.1531007127782,24.1162257212302,8.70449499019279,12.4423195299277,13.022834263919,20.1011759280994,22.5105044012672,24.7533161398432,11.490514833473,15.5185132071022,13.9799584368975,7.34544075331885,14.2074533000757,14.4932244350839,18.0689014166091,2.719885334831,11.873470216032,21.4426217757731,18.3691023709908,12.2186645514624,10.3962496772615,14.2882302531578,7.0667914902068,12.6759077799012,2.56652954828636,0,0,8.01016851741492,6.84071636782766,9.0994400102661,9.93399753555822,7.76813650941515,19.1490359393624,11.450031566565,16.1366703505435,14.5287763271317,18.0867168663147,17.4031286560843,22.4943198480119,10.6293836125781,17.0627241165496,7.07688441559899,9.70601099684455,6.18356251689102,8.24287930329878,7.45567044872489,22.2513405728776,19.8974371472782,5.62005521458901,2.27648736561249,2.39961092397363,1.27070227073065,28.4602214869163,20.1300265240196,13.4450156760765,31.462201954802,23.2701066170601,32.2071469067318,27.7432559845866,10.5912938404329,7.96204611904595,14.9106427475868,18.9397670297827,11.0602376518298,9.65588838620586,11.343914177737,10.0972227949929,11.1579858608178,14.7330778327577,15.8355914505942,19.1440494346872,5.38919982332106,7.94245536704841,10.7330185740009,7.67185063496512,10.8438427197983,11.4923214952315,11.9353639116607,11.3449532086541,2.1066395619397,3.3455227924913,1.98914449576915,11.5990432619881,10.0846205791871,14.0448407939592,12.7842157216014,13.9702604540657,10.0273623376796,10.2314935690179,12.6088498657821,13.077718345123,13.9875872426458,15.7600765515931,13.9438352418872,12.1345989563026,19.9790604914856,13.2864354572768,28.3891430561572,20.6838270882362,10.2429822724977,5.55346189993443,8.95810652247983,9.0572302025571,8.11865006329188,6.6555563125703,8.45036566610507,7.60902504450237,7.11793592316767,9.22314146454461,8.29406189040889,10.544693018181,7.60359939764569,3.59527763461689,7.13255564586491,7.76650965692032,9.293727146701,10.5108631600951,10.1436962105772,9.16430975303914,12.8008641530633,9.32806404541237,14.1649843158336,15.6466756858378,14.4438829614065,14.1906738510071,15.1190839814446,3.33690211432188,4.52085688760367,3.14806957338795,4.26006254915856,5.06472035480075,5.0925170356284,8.63088412352432,5.99900339067631,10.4333337011471,11.5014565221884,13.3970741160661,17.1620720213008,11.1134706296729,20.451305141498,11.0962009913574,12.5632169313291,9.66406200029472,9.28900365719548,8.14776411720903,6.57132695207806,9.21284415929987,12.1402256851867,12.6836871107569,13.8718926813448,10.4088404134924,15.9454768657487,13.109065177259,13.8147985492716,10.2700831592873,10.5553898757491,9.79030230873677,8.85175691434265,9.10591262805617,26.8119485279613,27.7791697223522,6.06559297893699,10.0988370881749,13.8823616543153,10.1514073517126,17.0184484208911,10.7535959078648,11.5855310522845,5.37845408498782,9.31064613852257,11.3979784585412,16.602086673754,27.6336332122754,17.8844507362418,9.79360820169904,7.81857404897165,11.5479086080775,3.98235415019888,10.4395673546642,6.65111825322452,8.67583366877131,9.44966057218473,12.604841065701,6.71913562237375,12.7236805317127,10.6949213515416,7.58488219045958,9.48767477174989,8.25084345985495,24.1712120085189,14.4048875225048,12.1597162755789,12.8602221018955,14.5418991586664,14.2695054081656,16.4549020602121,10.3518082698964,18.0697215209057,22.0305353698373,8.15955072803359,6.92522262354216,6.13564821444441,9.65006798850494,5.61050016814741,6.07321329056727,6.99554007911642,21.5093350332191,2.56306321196779,8.66824845445534,6.2966139305702,3.57900068308913,2.87057878214153,2.74533807847827,1.18984900995699,1.25956307091292,1.52019971184866,6.68269432610579,9.17374381385292,12.4024874947378,7.88438987999149,8.36353184057875,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| |||
|short_description=p1@Jkamp | |||
}} |
Latest revision as of 18:09, 26 September 2015
Short description: | p1@Jkamp |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Jkamp_5end |
Coexpression cluster: | MCL_coexpression_mm9:937 |
Association with transcript: | 0bp_to_uc007nvf.1, uc007nvg.1_5end |
EntrezGene: | Jkamp |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 2.36e-25 | 92 |
anatomical conduit | 2.23e-21 | 122 |
tube | 2.29e-20 | 114 |
neurectoderm | 2.35e-18 | 64 |
neural plate | 2.35e-18 | 64 |
presumptive neural plate | 2.35e-18 | 64 |
regional part of nervous system | 1.13e-16 | 54 |
ectoderm-derived structure | 3.23e-16 | 95 |
ectoderm | 3.23e-16 | 95 |
presumptive ectoderm | 3.23e-16 | 95 |
ecto-epithelium | 4.80e-16 | 73 |
central nervous system | 9.96e-16 | 73 |
nervous system | 1.01e-15 | 75 |
neural tube | 1.36e-15 | 52 |
neural rod | 1.36e-15 | 52 |
future spinal cord | 1.36e-15 | 52 |
neural keel | 1.36e-15 | 52 |
pre-chordal neural plate | 1.62e-14 | 49 |
brain | 2.01e-14 | 47 |
future brain | 2.01e-14 | 47 |
regional part of brain | 8.45e-14 | 46 |
anterior neural tube | 1.10e-12 | 40 |
regional part of forebrain | 4.69e-12 | 39 |
forebrain | 4.69e-12 | 39 |
future forebrain | 4.69e-12 | 39 |
gray matter | 1.44e-09 | 34 |
brain grey matter | 1.88e-08 | 29 |
regional part of telencephalon | 1.88e-08 | 29 |
telencephalon | 1.88e-08 | 29 |
occipital lobe | 2.60e-07 | 10 |
visual cortex | 2.60e-07 | 10 |
neocortex | 2.60e-07 | 10 |
developing anatomical structure | 4.63e-07 | 304 |