FFCP PHASE1:Hg19::chr6:30654977..30655009,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=170954 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29413 | |||
|TSSclassifier=strong | |||
|UniProt=Q6NYC8 | |||
|association_with_transcript=0bp_to_ENST00000399199_5end | |||
|cluster_id=chr6:30654977..30655009,- | |||
|description=CAGE_peak_4_at_PPP1R18_5end | |||
|id=chr6:30654977..30655009,- | |||
|ontology_enrichment_celltype=CL:0002371!3.10e-29!591;CL:0000144!2.36e-26!625;CL:0000548!3.79e-22!679;CL:0000004!3.79e-22!679;CL:0000255!3.79e-22!679;CL:0000012!2.66e-21!682;CL:0000055!3.70e-19!180;CL:0002057!1.14e-15!42;CL:0000003!1.67e-15!722;CL:0000860!2.01e-13!45;CL:0000723!1.52e-10!436;CL:0000220!2.23e-10!246;CL:0000048!3.78e-10!430;CL:0002194!4.73e-10!63;CL:0000576!4.73e-10!63;CL:0000040!4.73e-10!63;CL:0000559!4.73e-10!63;CL:0000766!4.78e-10!76;CL:0002321!7.46e-10!248;CL:0002009!9.72e-10!65;CL:0000057!1.39e-09!75;CL:0000183!1.40e-09!59;CL:0000034!4.75e-09!444;CL:0000680!2.00e-08!57;CL:0000056!2.00e-08!57;CL:0000355!2.00e-08!57;CL:0000187!3.12e-08!54;CL:0000063!4.40e-08!578;CL:0000192!1.25e-07!42;CL:0000514!1.25e-07!42;CL:0000557!1.47e-07!71;CL:0000839!4.77e-07!70;CL:0000393!5.88e-07!60;CL:0000211!5.88e-07!60;CL:0000222!8.61e-07!119;CL:0000359!8.91e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.91e-16;33!CL:0002057;1.91e-16;33!CL:0000473;1.64e-13;39!CL:0000234;1.64e-13;39!CL:0000576;1.81e-08;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.13e-15,42;CL:0002057,1.13e-15,42;CL:0000473,1.24e-15,48;CL:0000234,1.24e-15,48;CL:0000723,2.18e-11,433;CL:0002194,2.28e-11,59;CL:0000576,2.28e-11,59;CL:0000040,2.28e-11,59;CL:0000559,2.28e-11,59;CL:0000766,3.45e-11,72;CL:0002009,5.43e-11,61;CL:0000048,5.65e-11,427;CL:0002321,4.23e-10,250;CL:0000034,8.07e-10,441;CL:0000057,1.09e-09,76;CL:0000680,8.28e-09,58;CL:0000056,8.28e-09,58;CL:0000355,8.28e-09,58;CL:0000187,1.28e-08,55;CL:0000557,1.62e-08,67;CL:0000192,4.96e-08,43;CL:0000514,4.96e-08,43;CL:0000839,5.56e-08,66;CL:0000393,2.53e-07,61;CL:0000211,2.53e-07,61;CL:0000222,5.60e-07,121;CL:0000359,8.90e-07,32 | |||
|ontology_enrichment_development_v019=CL:0002057;8.37e-12;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!5.52e-17!167;UBERON:0003081!1.45e-14!216;UBERON:0000926!2.29e-12!448;UBERON:0004120!2.29e-12!448;UBERON:0006603!2.29e-12!448;UBERON:0000467!2.89e-11!625;UBERON:0000480!4.52e-11!626;UBERON:0004765!7.71e-10!101;UBERON:0001434!7.71e-10!101;UBERON:0000486!9.27e-10!82;UBERON:0000468!2.68e-09!659;UBERON:0001474!4.40e-09!86;UBERON:0002371!1.12e-08!80;UBERON:0000914!2.95e-08!83;UBERON:0002329!2.95e-08!83;UBERON:0003077!2.95e-08!83;UBERON:0003059!2.95e-08!83;UBERON:0007282!2.95e-08!83;UBERON:0009618!2.95e-08!83;UBERON:0007285!2.95e-08!83;UBERON:0002390!4.06e-08!102;UBERON:0003061!4.06e-08!102;UBERON:0000923!6.48e-08!604;UBERON:0005291!6.48e-08!604;UBERON:0006598!6.48e-08!604;UBERON:0002532!6.48e-08!604;UBERON:0002050!8.74e-08!605;UBERON:0005423!8.74e-08!605;UBERON:0004290!1.21e-07!70;UBERON:0002193!1.63e-07!112;UBERON:0005256!5.17e-07!143;UBERON:0001134!8.59e-07!61;UBERON:0002036!8.59e-07!61;UBERON:0003082!8.59e-07!61 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,7.47e-19,167;UBERON:0000926,1.14e-15,315;UBERON:0004120,1.14e-15,315;UBERON:0006603,1.14e-15,315;UBERON:0003081,2.96e-13,203;UBERON:0001434,3.37e-11,100;UBERON:0004765,4.68e-11,90;UBERON:0000486,4.01e-10,83;UBERON:0001474,4.78e-10,82;UBERON:0002371,1.17e-09,76;UBERON:0002390,6.77e-09,98;UBERON:0003061,6.77e-09,98;UBERON:0002193,3.34e-08,108;UBERON:0002329,5.48e-08,71;UBERON:0003059,5.48e-08,71;UBERON:0007282,5.48e-08,71;UBERON:0004290,5.48e-08,71;UBERON:0009618,5.48e-08,71;UBERON:0007503,6.53e-08,78;UBERON:0003077,1.74e-07,72;UBERON:0007285,1.74e-07,72;UBERON:0007524,1.86e-07,73;UBERON:0001134,3.93e-07,62;UBERON:0002036,3.93e-07,62;UBERON:0003082,3.93e-07,62;UBERON:0002405,6.21e-07,93;UBERON:0002199,6.93e-07,46;UBERON:0002416,6.93e-07,46;UBERON:0002385,8.02e-07,64;UBERON:0001015,8.02e-07,64;UBERON:0000383,8.02e-07,64;UBERON:0002097,8.16e-07,41 | |||
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| |||
|short_description=p4@PPP1R18 | |||
}} |
Latest revision as of 17:47, 17 September 2015
Short description: | p4@PPP1R18 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_PPP1R18_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000399199_5end |
EntrezGene: | PPP1R18 |
HGNC: | 29413 |
UniProt: | Q6NYC8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.13e-15 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.13e-15 | 42 |
defensive cell | 1.24e-15 | 48 |
phagocyte | 1.24e-15 | 48 |
somatic stem cell | 2.18e-11 | 433 |
monopoietic cell | 2.28e-11 | 59 |
monocyte | 2.28e-11 | 59 |
monoblast | 2.28e-11 | 59 |
promonocyte | 2.28e-11 | 59 |
myeloid leukocyte | 3.45e-11 | 72 |
macrophage dendritic cell progenitor | 5.43e-11 | 61 |
multi fate stem cell | 5.65e-11 | 427 |
embryonic cell | 4.23e-10 | 250 |
stem cell | 8.07e-10 | 441 |
fibroblast | 1.09e-09 | 76 |
muscle precursor cell | 8.28e-09 | 58 |
myoblast | 8.28e-09 | 58 |
multi-potent skeletal muscle stem cell | 8.28e-09 | 58 |
muscle cell | 1.28e-08 | 55 |
granulocyte monocyte progenitor cell | 1.62e-08 | 67 |
smooth muscle cell | 4.96e-08 | 43 |
smooth muscle myoblast | 4.96e-08 | 43 |
myeloid lineage restricted progenitor cell | 5.56e-08 | 66 |
electrically responsive cell | 2.53e-07 | 61 |
electrically active cell | 2.53e-07 | 61 |
mesodermal cell | 5.60e-07 | 121 |
vascular associated smooth muscle cell | 8.90e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system | 7.47e-19 | 167 |
mesoderm | 1.14e-15 | 315 |
mesoderm-derived structure | 1.14e-15 | 315 |
presumptive mesoderm | 1.14e-15 | 315 |
lateral plate mesoderm | 2.96e-13 | 203 |
skeletal system | 3.37e-11 | 100 |
skeletal element | 4.68e-11 | 90 |
multilaminar epithelium | 4.01e-10 | 83 |
bone element | 4.78e-10 | 82 |
bone marrow | 1.17e-09 | 76 |
hematopoietic system | 6.77e-09 | 98 |
blood island | 6.77e-09 | 98 |
hemolymphoid system | 3.34e-08 | 108 |
somite | 5.48e-08 | 71 |
presomitic mesoderm | 5.48e-08 | 71 |
presumptive segmental plate | 5.48e-08 | 71 |
dermomyotome | 5.48e-08 | 71 |
trunk paraxial mesoderm | 5.48e-08 | 71 |
epithelial vesicle | 6.53e-08 | 78 |
paraxial mesoderm | 1.74e-07 | 72 |
presumptive paraxial mesoderm | 1.74e-07 | 72 |
dense mesenchyme tissue | 1.86e-07 | 73 |
skeletal muscle tissue | 3.93e-07 | 62 |
striated muscle tissue | 3.93e-07 | 62 |
myotome | 3.93e-07 | 62 |
immune system | 6.21e-07 | 93 |
integument | 6.93e-07 | 46 |
integumental system | 6.93e-07 | 46 |
muscle tissue | 8.02e-07 | 64 |
musculature | 8.02e-07 | 64 |
musculature of body | 8.02e-07 | 64 |
skin of body | 8.16e-07 | 41 |