FFCP PHASE1:Hg19::chr7:105517222..105517286,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=222256 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26308 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000470188,ENST00000474330,ENST00000487084,uc003vdj.1,uc003vdk.2_5end | |||
|cluster_id=chr7:105517222..105517286,+ | |||
|description=CAGE_peak_1_at_CDHR3_5end | |||
|id=chr7:105517222..105517286,+ | |||
|ontology_enrichment_celltype=CL:0000057!1.25e-08!75;CL:0000791!1.76e-07!18;CL:0000789!1.76e-07!18;CL:0002420!1.76e-07!18;CL:0002419!1.76e-07!18;CL:0000790!1.76e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000791;8.25e-08;18!CL:0000789;8.25e-08;18!CL:0002419;8.25e-08;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,6.84e-08,76;CL:0000791,7.13e-08,18;CL:0000789,7.13e-08,18;CL:0002420,7.13e-08,18;CL:0002419,7.13e-08,18;CL:0000790,7.13e-08,18 | |||
|ontology_enrichment_development_v019=CL:0000790;8.25e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.77e-12!82;UBERON:0000073!2.49e-11!94;UBERON:0001016!2.49e-11!94;UBERON:0001049!3.02e-11!57;UBERON:0005068!3.02e-11!57;UBERON:0006241!3.02e-11!57;UBERON:0007135!3.02e-11!57;UBERON:0005743!4.81e-11!86;UBERON:0000955!3.77e-10!69;UBERON:0006238!3.77e-10!69;UBERON:0002616!8.28e-10!59;UBERON:0000475!1.83e-09!365;UBERON:0007023!2.28e-09!115;UBERON:0001869!4.06e-09!32;UBERON:0000924!5.53e-09!173;UBERON:0006601!5.53e-09!173;UBERON:0002020!7.96e-09!34;UBERON:0003528!7.96e-09!34;UBERON:0000160!8.31e-09!27;UBERON:0001893!1.53e-08!34;UBERON:0005409!1.99e-08!35;UBERON:0002619!2.51e-08!22;UBERON:0002791!3.09e-08!33;UBERON:0003080!3.66e-08!42;UBERON:0004121!4.29e-08!169;UBERON:0002780!9.80e-08!41;UBERON:0001890!9.80e-08!41;UBERON:0006240!9.80e-08!41;UBERON:0001950!1.22e-07!20;UBERON:0003102!1.92e-07!95;UBERON:0000153!2.48e-07!129;UBERON:0007811!2.48e-07!129;UBERON:0000956!4.23e-07!25;UBERON:0000203!4.23e-07!25;UBERON:0000033!5.77e-07!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;1.20e-08;22!UBERON:0001869;3.54e-08;32!UBERON:0001950;6.49e-08;20!UBERON:0003528;6.73e-08;34!UBERON:0002020;6.73e-08;34!UBERON:0002791;2.02e-07;32!UBERON:0005409;2.61e-07;22!UBERON:0001893;3.19e-07;34!UBERON:0000160;4.73e-07;17!UBERON:0000956;6.78e-07;25!UBERON:0000203;6.78e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011216,1.30e-11,223;UBERON:0001016,3.96e-11,89;UBERON:0001017,5.58e-11,81;UBERON:0001049,9.19e-11,56;UBERON:0005068,9.19e-11,56;UBERON:0006241,9.19e-11,56;UBERON:0007135,9.19e-11,56;UBERON:0000073,2.25e-10,53;UBERON:0002616,2.25e-10,53;UBERON:0001869,3.44e-09,32;UBERON:0000955,5.23e-09,68;UBERON:0006238,5.23e-09,68;UBERON:0007023,5.40e-09,114;UBERON:0002619,8.98e-09,22;UBERON:0003528,1.09e-08,34;UBERON:0002020,1.09e-08,34;UBERON:0001893,2.13e-08,34;UBERON:0004121,3.35e-08,171;UBERON:0000924,3.35e-08,171;UBERON:0006601,3.35e-08,171;UBERON:0002791,3.44e-08,32;UBERON:0001950,4.84e-08,20;UBERON:0002780,1.43e-07,41;UBERON:0001890,1.43e-07,41;UBERON:0003080,1.43e-07,41;UBERON:0006240,1.43e-07,41;UBERON:0000956,4.69e-07,25;UBERON:0000203,4.69e-07,25;UBERON:0000160,6.45e-07,17;UBERON:0003102,8.43e-07,99 | |||
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| |||
|short_description=p1@CDHR3 | |||
}} |
Latest revision as of 22:08, 24 September 2015
Short description: | p1@CDHR3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CDHR3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000470188, ENST00000474330, ENST00000487084, uc003vdj.1, uc003vdk.2_5end |
EntrezGene: | CDHR3 |
HGNC: | 26308 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 6.84e-08 | 76 |
mature alpha-beta T cell | 7.13e-08 | 18 |
alpha-beta T cell | 7.13e-08 | 18 |
immature T cell | 7.13e-08 | 18 |
mature T cell | 7.13e-08 | 18 |
immature alpha-beta T cell | 7.13e-08 | 18 |
Ontology term | p-value | n |
---|---|---|
organ system subdivision | 1.30e-11 | 223 |
nervous system | 3.96e-11 | 89 |
central nervous system | 5.58e-11 | 81 |
neural tube | 9.19e-11 | 56 |
neural rod | 9.19e-11 | 56 |
future spinal cord | 9.19e-11 | 56 |
neural keel | 9.19e-11 | 56 |
regional part of nervous system | 2.25e-10 | 53 |
regional part of brain | 2.25e-10 | 53 |
cerebral hemisphere | 3.44e-09 | 32 |
brain | 5.23e-09 | 68 |
future brain | 5.23e-09 | 68 |
adult organism | 5.40e-09 | 114 |
regional part of cerebral cortex | 8.98e-09 | 22 |
brain grey matter | 1.09e-08 | 34 |
gray matter | 1.09e-08 | 34 |
telencephalon | 2.13e-08 | 34 |
ectoderm-derived structure | 3.35e-08 | 171 |
ectoderm | 3.35e-08 | 171 |
presumptive ectoderm | 3.35e-08 | 171 |
regional part of telencephalon | 3.44e-08 | 32 |
neocortex | 4.84e-08 | 20 |
regional part of forebrain | 1.43e-07 | 41 |
forebrain | 1.43e-07 | 41 |
anterior neural tube | 1.43e-07 | 41 |
future forebrain | 1.43e-07 | 41 |
cerebral cortex | 4.69e-07 | 25 |
pallium | 4.69e-07 | 25 |
intestine | 6.45e-07 | 17 |
surface structure | 8.43e-07 | 99 |