FFCP PHASE1:Mm9::chr5:144861222..144861252,+: Difference between revisions
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{{FFCP|EntrezGene=231876|HGNC=|MCL_coexpression_id=240|UniProt=Q3TYD6|association_with_transcript=-52bp_to_ENSMUST00000041804,NM_001081109,uc009alg.1_5end|description=CAGE_peak_1_at_Lmtk2_5end|id=chr5:144861222..144861252,+|ontology_enrichment_celltype=CL:0000117!6.19e-09!23;CL:0000337!6.19e-09!23;CL:0000540!1.06e-07!33;CL:0000047!1.06e-07!33;CL:0000031!1.06e-07!33;CL:0000404!1.06e-07!33|ontology_enrichment_celltype_v019_2=CL:0000117,6.19e-09,23;CL:0000337,6.19e-09,23;CL:0000540,1.06e-07,33;CL:0000047,1.06e-07,33;CL:0000031,1.06e-07,33;CL:0000404,1.06e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!2.44e-14!34;UBERON:0001017!1.07e-13!73;UBERON:0005743!1.07e-13!73;UBERON:0001049!2.36e-13!52;UBERON:0005068!2.36e-13!52;UBERON:0006241!2.36e-13!52;UBERON:0007135!2.36e-13!52;UBERON:0000955!8.61e-13!50;UBERON:0006238!8.61e-13!50;UBERON:0000073!2.06e-12!75;UBERON:0001016!2.06e-12!75;UBERON:0002616!2.83e-12!49;UBERON:0002791!4.00e-12!29;UBERON:0003528!4.00e-12!29;UBERON:0001893!4.00e-12!29;UBERON:0000064!5.50e-12!99;UBERON:0007023!2.30e-10!51;UBERON:0003080!2.49e-10!40;UBERON:0000033!3.07e-10!63;UBERON:0004121!4.03e-10!102;UBERON:0000924!4.03e-10!102;UBERON:0006601!4.03e-10!102;UBERON:0002780!6.73e-10!39;UBERON:0001890!6.73e-10!39;UBERON:0006240!6.73e-10!39;UBERON:0000956!4.52e-09!21;UBERON:0001869!4.52e-09!21;UBERON:0000203!4.52e-09!21;UBERON:0003056!1.92e-08!49;UBERON:0002346!2.60e-08!71;UBERON:0003075!2.60e-08!71;UBERON:0007284!2.60e-08!71;UBERON:0002619!4.84e-08!17;UBERON:0002021!1.15e-07!10;UBERON:0000411!1.15e-07!10;UBERON:0001950!1.15e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.86e-14,54;UBERON:0002020,2.44e-14,34;UBERON:0001017,1.07e-13,73;UBERON:0001049,2.36e-13,52;UBERON:0005068,2.36e-13,52;UBERON:0006241,2.36e-13,52;UBERON:0007135,2.36e-13,52;UBERON:0004121,1.45e-12,95;UBERON:0000924,1.45e-12,95;UBERON:0006601,1.45e-12,95;UBERON:0001016,2.06e-12,75;UBERON:0003528,4.00e-12,29;UBERON:0002791,4.00e-12,29;UBERON:0001893,4.00e-12,29;UBERON:0000955,2.69e-11,47;UBERON:0006238,2.69e-11,47;UBERON:0002346,4.75e-11,64;UBERON:0003075,4.75e-11,64;UBERON:0007284,4.75e-11,64;UBERON:0002616,8.47e-11,46;UBERON:0010371,9.74e-11,73;UBERON:0007023,2.30e-10,51;UBERON:0003080,2.49e-10,40;UBERON:0002780,6.73e-10,39;UBERON:0001890,6.73e-10,39;UBERON:0006240,6.73e-10,39;UBERON:0011216,1.34e-09,194;UBERON:0000956,4.52e-09,21;UBERON:0001869,4.52e-09,21;UBERON:0000203,4.52e-09,21;UBERON:0003056,1.92e-08,49;UBERON:0002619,4.84e-08,17;UBERON:0002021,1.15e-07,10;UBERON:0000411,1.15e-07,10;UBERON:0001950,1.15e-07,10;UBERON:0000160,1.57e-07,31|phase1_expression=11.2104192973356,223.69323629683,237.964602200727,253.76747328643,248.945177783335,84.6111530435925,80.3627483648608,23.6295681898085,29.143265485395,30.6624529481811,15.923271044972,17.6296471379693,19.174481752295,20.3689537636264,30.3129883252253,23.28465574983,28.682037003254,27.4452083861667,33.044578498983,29.2828859740641,44.0524242982541,4.86525660884338,4.4403964153619,69.9166887607187,57.3523202667925,169.398429413931,122.336406909177,109.243914971746,68.598454423751,66.2839241268618,51.8849394933413,13.3356441426523,21.52726756546,0,24.5523876788583,14.1299448554718,20.8252743387616,66.9650609179052,32.8160844699996,48.1641844455894,88.8229546926832,80.5993672250966,75.2541047198288,12.4637849795822,11.2528393653661,10.0950713688925,14.0830441982647,16.7879370412944,22.6276768216506,27.414615769474,12.738764367908,21.5628846547457,41.7778689083764,40.6202799526353,43.0200062902354,12.0911934936895,12.8940047972441,17.532851137433,45.1165707716903,46.0222151966669,57.6786577190623,16.9422266034566,18.6751907183339,3.1496490104849,8.89979726310277,7.104801149461,11.6844043102178,13.0634223809329,31.1068836925433,32.6714370762691,34.2829687002753,66.84233035049,58.5301633521776,33.5624789848974,33.0666875012915,25.7381260250806,71.5753226496027,73.5479067370681,70.5053987646157,45.2369966914565,40.6205137594699,38.5475894212002,59.7451617862955,48.3975844627245,62.0360885973849,59.8096028511545,51.8232918108735,43.6174703231203,12.5705480933086,11.260162455911,50.4364210340919,17.2084775396277,20.3991400112325,15.1116893658589,18.1937396885347,21.5052905806721,24.9991067834518,4.60161870960756,3.63700406444016,5.65343319216544,14.084341977668,10.2661181931454,20.3844191765317,21.3320010945999,26.4119070033681,25.8427062784601,26.2872711407687,32.8849573590893,21.4918443427153,24.0476265285016,12.4909435271618,9.74289530598852,12.4532368518272,10.399862198131,15.4041206347773,20.6093209780668,60.0683771594529,21.5453041810668,31.8459798701955,13.2648816956876,18.9923705875938,17.455509112868,31.6865994070808,49.1871738979399,48.801082687535,49.3032116552581,10.9031763300387,5.99902730993408,10.2926883929182,58.268558728476,94.245124180637,41.2146274930195,101.165754351905,93.3361419255706,51.94701113989,51.2682391294114,13.6464747559424,17.416975885413,9.85618757891331,47.5598594303431,12.231321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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=231876 | |||
|HGNC= | |||
|MCL_coexpression_id=240 | |||
|TSSclassifier=NA | |||
|UniProt=Q3TYD6 | |||
|association_with_transcript=-52bp_to_ENSMUST00000041804,NM_001081109,uc009alg.1_5end | |||
|cluster_id=chr5:144861222..144861252,+ | |||
|description=CAGE_peak_1_at_Lmtk2_5end | |||
|id=chr5:144861222..144861252,+ | |||
|ontology_enrichment_celltype=CL:0000117!6.19e-09!23;CL:0000337!6.19e-09!23;CL:0000540!1.06e-07!33;CL:0000047!1.06e-07!33;CL:0000031!1.06e-07!33;CL:0000404!1.06e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,6.19e-09,23;CL:0000337,6.19e-09,23;CL:0000540,1.06e-07,33;CL:0000047,1.06e-07,33;CL:0000031,1.06e-07,33;CL:0000404,1.06e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!2.44e-14!34;UBERON:0001017!1.07e-13!73;UBERON:0005743!1.07e-13!73;UBERON:0001049!2.36e-13!52;UBERON:0005068!2.36e-13!52;UBERON:0006241!2.36e-13!52;UBERON:0007135!2.36e-13!52;UBERON:0000955!8.61e-13!50;UBERON:0006238!8.61e-13!50;UBERON:0000073!2.06e-12!75;UBERON:0001016!2.06e-12!75;UBERON:0002616!2.83e-12!49;UBERON:0002791!4.00e-12!29;UBERON:0003528!4.00e-12!29;UBERON:0001893!4.00e-12!29;UBERON:0000064!5.50e-12!99;UBERON:0007023!2.30e-10!51;UBERON:0003080!2.49e-10!40;UBERON:0000033!3.07e-10!63;UBERON:0004121!4.03e-10!102;UBERON:0000924!4.03e-10!102;UBERON:0006601!4.03e-10!102;UBERON:0002780!6.73e-10!39;UBERON:0001890!6.73e-10!39;UBERON:0006240!6.73e-10!39;UBERON:0000956!4.52e-09!21;UBERON:0001869!4.52e-09!21;UBERON:0000203!4.52e-09!21;UBERON:0003056!1.92e-08!49;UBERON:0002346!2.60e-08!71;UBERON:0003075!2.60e-08!71;UBERON:0007284!2.60e-08!71;UBERON:0002619!4.84e-08!17;UBERON:0002021!1.15e-07!10;UBERON:0000411!1.15e-07!10;UBERON:0001950!1.15e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.86e-14,54;UBERON:0002020,2.44e-14,34;UBERON:0001017,1.07e-13,73;UBERON:0001049,2.36e-13,52;UBERON:0005068,2.36e-13,52;UBERON:0006241,2.36e-13,52;UBERON:0007135,2.36e-13,52;UBERON:0004121,1.45e-12,95;UBERON:0000924,1.45e-12,95;UBERON:0006601,1.45e-12,95;UBERON:0001016,2.06e-12,75;UBERON:0003528,4.00e-12,29;UBERON:0002791,4.00e-12,29;UBERON:0001893,4.00e-12,29;UBERON:0000955,2.69e-11,47;UBERON:0006238,2.69e-11,47;UBERON:0002346,4.75e-11,64;UBERON:0003075,4.75e-11,64;UBERON:0007284,4.75e-11,64;UBERON:0002616,8.47e-11,46;UBERON:0010371,9.74e-11,73;UBERON:0007023,2.30e-10,51;UBERON:0003080,2.49e-10,40;UBERON:0002780,6.73e-10,39;UBERON:0001890,6.73e-10,39;UBERON:0006240,6.73e-10,39;UBERON:0011216,1.34e-09,194;UBERON:0000956,4.52e-09,21;UBERON:0001869,4.52e-09,21;UBERON:0000203,4.52e-09,21;UBERON:0003056,1.92e-08,49;UBERON:0002619,4.84e-08,17;UBERON:0002021,1.15e-07,10;UBERON:0000411,1.15e-07,10;UBERON:0001950,1.15e-07,10;UBERON:0000160,1.57e-07,31 | |||
|phase1_expression=11.2104192973356,223.69323629683,237.964602200727,253.76747328643,248.945177783335,84.6111530435925,80.3627483648608,23.6295681898085,29.143265485395,30.6624529481811,15.923271044972,17.6296471379693,19.174481752295,20.3689537636264,30.3129883252253,23.28465574983,28.682037003254,27.4452083861667,33.044578498983,29.2828859740641,44.0524242982541,4.86525660884338,4.4403964153619,69.9166887607187,57.3523202667925,169.398429413931,122.336406909177,109.243914971746,68.598454423751,66.2839241268618,51.8849394933413,13.3356441426523,21.52726756546,0,24.5523876788583,14.1299448554718,20.8252743387616,66.9650609179052,32.8160844699996,48.1641844455894,88.8229546926832,80.5993672250966,75.2541047198288,12.4637849795822,11.2528393653661,10.0950713688925,14.0830441982647,16.7879370412944,22.6276768216506,27.414615769474,12.738764367908,21.5628846547457,41.7778689083764,40.6202799526353,43.0200062902354,12.0911934936895,12.8940047972441,17.532851137433,45.1165707716903,46.0222151966669,57.6786577190623,16.9422266034566,18.6751907183339,3.1496490104849,8.89979726310277,7.104801149461,11.6844043102178,13.0634223809329,31.1068836925433,32.6714370762691,34.2829687002753,66.84233035049,58.5301633521776,33.5624789848974,33.0666875012915,25.7381260250806,71.5753226496027,73.5479067370681,70.5053987646157,45.2369966914565,40.6205137594699,38.5475894212002,59.7451617862955,48.3975844627245,62.0360885973849,59.8096028511545,51.8232918108735,43.6174703231203,12.5705480933086,11.260162455911,50.4364210340919,17.2084775396277,20.3991400112325,15.1116893658589,18.1937396885347,21.5052905806721,24.9991067834518,4.60161870960756,3.63700406444016,5.65343319216544,14.084341977668,10.2661181931454,20.3844191765317,21.3320010945999,26.4119070033681,25.8427062784601,26.2872711407687,32.8849573590893,21.4918443427153,24.0476265285016,12.4909435271618,9.74289530598852,12.4532368518272,10.399862198131,15.4041206347773,20.6093209780668,60.0683771594529,21.5453041810668,31.8459798701955,13.2648816956876,18.9923705875938,17.455509112868,31.6865994070808,49.1871738979399,48.801082687535,49.3032116552581,10.9031763300387,5.99902730993408,10.2926883929182,58.268558728476,94.245124180637,41.2146274930195,101.165754351905,93.3361419255706,51.94701113989,51.2682391294114,13.6464747559424,17.416975885413,9.85618757891331,47.5598594303431,12.2313216384941,13.104419952708,21.4273934468366,13.7141384230501,20.547022743701,21.3949912875699,23.0506242416933,27.1638539275966,13.5807835547691,17.3977593754394,14.0760899331159,9.86380795924087,8.89751197521913,22.984642990463,12.7584924572925,13.5343301436575,4.91549231119264,9.77922047035918,10.7982129770325,13.2560494422721,10.3191466391682,13.6847166710371,12.7842157216014,16.9217239302767,12.1871019181029,12.3242990717716,15.0233104783787,14.0118410840603,14.3167069424728,16.5809138719886,25.4556061973987,20.6141982269719,16.0271584162467,23.0835040267839,57.829735855135,37.6630881308181,145.384264512871,78.2773677324091,12.1574302805083,11.3795969211615,19.330119198314,24.6053900040478,26.6853652613844,28.5338439168839,59.3161326930639,34.9161784014903,35.1869292320377,31.0372096384195,34.118715245846,48.536248067328,51.0085797704278,52.9715786856617,16.5011073829181,15.0808036644842,13.5249282807697,17.1067115390064,15.9041039477453,22.0927832654503,33.4521281387321,39.707129806513,33.911725213737,39.8572839467416,16.8977997439675,19.520877368783,16.9040735797355,17.9889689907883,24.3432145666204,19.7765270996982,15.2775511068852,20.4264257590076,15.7271169971784,11.2570179407113,8.62609239164127,8.93138274404408,12.1694692514679,12.1237861414614,12.19902411949,12.0610880340842,31.5927955184894,10.9905018826881,15.9705676913185,9.84521497496091,16.6630076284836,17.7556632888325,30.2315423925237,30.4408490658166,22.5418256071853,19.710357378741,24.237124835938,29.0038067046856,31.0832967358612,36.8855099382855,15.0791283939272,6.52686820582452,46.2258416637894,31.7327258250442,51.3761887960934,52.510835593307,7.21313759657372,23.4797962300067,19.2460013843917,17.9601822376454,28.6513118984623,27.4814117645435,27.8498342602993,29.7230357328274,21.8597778904443,29.2255857911312,29.2512955680427,76.4744733083901,16.890870139784,12.1084610493734,15.3113741792362,21.2811458634571,35.84118735179,16.0235219862288,17.5347663039556,18.483297816078,26.8724722521503,24.2873766875703,26.1012576099903,18.5402202033528,12.1209108650805,24.3348303610578,29.5172104009997,28.8779521094923,33.0226417581174,14.0447653344422,13.712020480972,16.289614662401,21.8128487379996,19.6205699362278,18.7585883486418,20.0946866415636,24.8752010547533,45.1202310939937,16.0985730580122,35.4505443824182,15.339120536111,25.5726801695381,27.8137561527308,33.3206026482474,48.9687805538149,57.6672689252685,27.3393409276564,16.0981757011314,13.1488114432495,19.2135826144785,27.065457088763,21.7339264546196,15.298058699447,13.7152423277185,14.6491972232689,16.2294005062569,13.7606157207794,16.8755157715284,15.9847904416266,17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| |||
|short_description=p1@Lmtk2 | |||
}} |
Latest revision as of 17:09, 25 September 2015
Short description: | p1@Lmtk2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Lmtk2_5end |
Coexpression cluster: | MCL_coexpression_mm9:240 |
Association with transcript: | -52bp_to_ENSMUST00000041804, NM_001081109, uc009alg.1_5end |
EntrezGene: | Lmtk2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 6.19e-09 | 23 |
neuroblast (sensu Vertebrata) | 6.19e-09 | 23 |
neuron | 1.06e-07 | 33 |
neuronal stem cell | 1.06e-07 | 33 |
neuroblast | 1.06e-07 | 33 |
electrically signaling cell | 1.06e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.86e-14 | 54 |
gray matter | 2.44e-14 | 34 |
central nervous system | 1.07e-13 | 73 |
neural tube | 2.36e-13 | 52 |
neural rod | 2.36e-13 | 52 |
future spinal cord | 2.36e-13 | 52 |
neural keel | 2.36e-13 | 52 |
ectoderm-derived structure | 1.45e-12 | 95 |
ectoderm | 1.45e-12 | 95 |
presumptive ectoderm | 1.45e-12 | 95 |
nervous system | 2.06e-12 | 75 |
brain grey matter | 4.00e-12 | 29 |
regional part of telencephalon | 4.00e-12 | 29 |
telencephalon | 4.00e-12 | 29 |
brain | 2.69e-11 | 47 |
future brain | 2.69e-11 | 47 |
neurectoderm | 4.75e-11 | 64 |
neural plate | 4.75e-11 | 64 |
presumptive neural plate | 4.75e-11 | 64 |
regional part of brain | 8.47e-11 | 46 |
ecto-epithelium | 9.74e-11 | 73 |
adult organism | 2.30e-10 | 51 |
anterior neural tube | 2.49e-10 | 40 |
regional part of forebrain | 6.73e-10 | 39 |
forebrain | 6.73e-10 | 39 |
future forebrain | 6.73e-10 | 39 |
organ system subdivision | 1.34e-09 | 194 |
cerebral cortex | 4.52e-09 | 21 |
cerebral hemisphere | 4.52e-09 | 21 |
pallium | 4.52e-09 | 21 |
pre-chordal neural plate | 1.92e-08 | 49 |
regional part of cerebral cortex | 4.84e-08 | 17 |
occipital lobe | 1.15e-07 | 10 |
visual cortex | 1.15e-07 | 10 |
neocortex | 1.15e-07 | 10 |
intestine | 1.57e-07 | 31 |