FFCP PHASE1:Mm9::chr7:29573974..29574005,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=320435|HGNC=|MCL_coexpression_id=36|UniProt=Q80UW3|association_with_transcript=0bp_to_ENSMUST00000059857,NM_177158,uc009fzw.2,uc009fzx.2_5end|description=CAGE_peak_1_at_Rinl_5end|id=chr7:29573974..29574005,+|ontology_enrichment_celltype=CL:0000084!3.19e-08!11;CL:0000827!3.19e-08!11;CL:0000838!5.28e-08!12;CL:0000791!4.52e-07!9;CL:0000789!4.52e-07!9;CL:0002420!4.52e-07!9;CL:0002419!4.52e-07!9;CL:0000790!4.52e-07!9;CL:0000542!7.28e-07!13;CL:0000051!7.28e-07!13|ontology_enrichment_celltype_v019_2=CL:0000084,2.58e-11,11;CL:0000827,2.58e-11,11;CL:0000838,4.84e-10,12;CL:0000791,1.23e-09,9;CL:0000789,1.23e-09,9;CL:0002420,1.23e-09,9;CL:0002419,1.23e-09,9;CL:0000790,1.23e-09,9;CL:0000542,5.69e-09,13;CL:0000051,5.69e-09,13;CL:0000624,1.19e-08,8;CL:0002031,4.93e-07,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001007!1.04e-13!128;UBERON:0001555!1.04e-13!128;UBERON:0007026!1.04e-13!128;UBERON:0004119!1.07e-13!130;UBERON:0000925!1.07e-13!130;UBERON:0006595!1.07e-13!130;UBERON:0004177!5.16e-13!29;UBERON:0004921!6.27e-13!126;UBERON:0004185!6.27e-13!126;UBERON:0002193!7.85e-11!48;UBERON:0003408!1.95e-10!24;UBERON:0006562!3.31e-10!24;UBERON:0001557!3.31e-10!24;UBERON:0001042!3.31e-10!24;UBERON:0008814!3.31e-10!24;UBERON:0009145!3.31e-10!24;UBERON:0002370!3.59e-10!23;UBERON:0000974!3.59e-10!23;UBERON:0004807!3.59e-10!23;UBERON:0005058!3.59e-10!23;UBERON:0003351!3.59e-10!23;UBERON:0009113!3.59e-10!23;UBERON:0003295!3.59e-10!23;UBERON:0009722!3.59e-10!23;UBERON:0005562!3.59e-10!23;UBERON:0007690!3.59e-10!23;UBERON:0000072!3.67e-10!27;UBERON:0005057!4.14e-10!51;UBERON:0002405!9.89e-10!70;UBERON:0001004!1.54e-09!42;UBERON:0002390!1.68e-09!45;UBERON:0003061!1.68e-09!45;UBERON:0000065!2.95e-09!41;UBERON:0000077!4.55e-09!97;UBERON:0001041!1.31e-08!92;UBERON:0005911!1.90e-08!69;UBERON:0003929!3.46e-08!55;UBERON:0003104!4.89e-07!131;UBERON:0009142!4.89e-07!131|ontology_enrichment_uberon_v019_2=UBERON:0004177,7.92e-20,29;UBERON:0005057,7.92e-20,29;UBERON:0000077,4.15e-17,35;UBERON:0002193,1.73e-16,48;UBERON:0002405,1.73e-16,48;UBERON:0003408,5.28e-16,24;UBERON:0002370,1.27e-15,23;UBERON:0000974,1.27e-15,23;UBERON:0004807,1.27e-15,23;UBERON:0005058,1.27e-15,23;UBERON:0003351,1.27e-15,23;UBERON:0009113,1.27e-15,23;UBERON:0003295,1.27e-15,23;UBERON:0009722,1.27e-15,23;UBERON:0005562,1.27e-15,23;UBERON:0007690,1.27e-15,23;UBERON:0006562,1.21e-14,24;UBERON:0001557,1.21e-14,24;UBERON:0001042,1.21e-14,24;UBERON:0008814,1.21e-14,24;UBERON:0009145,1.21e-14,24;UBERON:0002390,1.76e-14,45;UBERON:0003061,1.76e-14,45;UBERON:0004119,5.36e-14,118;UBERON:0000925,5.36e-14,118;UBERON:0006595,5.36e-14,118;UBERON:0001007,9.03e-14,116;UBERON:0001555,9.03e-14,116;UBERON:0007026,9.03e-14,116;UBERON:0004921,8.44e-13,114;UBERON:0000072,3.66e-12,27;UBERON:0001004,8.20e-11,42;UBERON:0000065,2.01e-10,41;UBERON:0003929,5.23e-10,55;UBERON:0005911,8.00e-10,69;UBERON:0001041,1.10e-09,80;UBERON:0000490,2.43e-09,66;UBERON:0007811,4.02e-08,36;UBERON:0002530,2.83e-07,65|phase1_expression=0,4.88565570695105,1.36499771816861,0.30246421130683,0.500895729946347,2.85394762250213,4.90586545250604,66.6276348958533,5.91312633037,6.08567768437183,13.0125655851384,14.2792164601652,87.6547737247773,79.8148274085446,1.33243904726265,2.22722794128809,0.699561878128147,7.25562980323947,9.87223921961319,4.66828616977833,1.87095238332354,17.3759164601549,12.015190300391,2.87986361028132,3.89995777814189,5.16808767703518,3.4460959692726,3.01659725760245,1.14014051673824,2.26827116783938,3.54768817048488,0,0,0,0,0.498703936075477,0,75.3356935326434,63.2881629064278,70.152181692489,92.3523436208692,73.7689123755121,87.3918635456076,0,0,0,0,0,0,0,0,0,0.503347818173209,35.5427449585559,44.7004752859477,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.56276261003168,0,0,0,0,0.757261933331841,0,0,0,0,0,0,0,2.24711072210803,0,0,0,0,0,0,0,0.649473123033642,0.506719730950197,0.505524445014783,3.4255163915718,42.4658129181362,2.67195850316685,0.173485326766136,0,0.461230994512117,0.150722640552623,0.23517741427141,0.376999773989026,0,1.15679485535929,10.6153266233985,0.485300549842228,3.3126227769059,2.42437626567611,0,0,0,5.36459815938042,0.838705871541442,1.19980546198682,0.381210681219194,0.149790639404823,0,0,0,0,0,0,0.101839363850316,6.22034853050465,0.252722758433675,0.841767423545896,0.130120442962704,0,0.180062129805349,0,0,0,0,0.258703370739016,0,0,0.175951124163949,0.219195732427575,0.556094498451196,0.348252166522167,0.411564272815887,0.199034266818493,0.702213187313235,0.257347907114715,0.284163499395593,0,0,0,0.23674473558521,0.393528463494808,0,0,0,0.350296027101508,0,0,0,0.584799949701329,0.219550115291051,0.134206418760372,0,0,6.93879444265976,0.793351699990633,0,0.232236671860439,0.515469845288373,0.201683524623343,0.444756087689741,1.33157938278791,1.42358718463353,0,1.00534083520108,1.39269530428806,1.75467678407208,2.69645822596266,1.29682829924817,1.59313018603494,0,0.228497025219458,0,0,0,0,0.189709611372772,0,0.156998727841375,0.370191491765402,0.296452627087149,0.667380422864376,0.393117990226406,0.449724224769707,1.01430060694251,1.68824011826692,2.80088436959562,2.87696137450811,1.29708181420028,2.47105271869273,2.87536413054709,1.11642284300551,0.936113019343682,1.01031551178845,0.358794827043824,0,7.02062122633098,0.189491411770485,0,0.169745085775188,0,0.502518772325447,0,0.195133647857799,1.10344600874334,0.664394068946325,2.07291199254733,3.76885623846197,2.93564469172023,2.16973587872267,0,0,1.47529281905711,2.20749397043786,0.160550589987792,0,0,0.504941854408746,0,0,0,0,0,0,0,0,0,0.321321316421807,0.851640511249612,0.178065603667255,0.325773918707152,2.96946221350564,3.98235415019888,0,0.302323556964751,0.188605079755898,0.590603785761546,0.922305443831782,0,0,0.356497378384721,3.16036757935816,0,0,0,0,0,0,0,0,0,0,3.52007562095566,0,0.882113592219848,1.31909002353184,0.322928853391811,0.180938774784468,0.477489376012546,0.164140899745061,1.7488850197791,0,11.9609616558497,2.06386867963222,6.85219751267933,3.95573759709851,5.74115756428306,6.40578884978263,2.37969801991397,3.07893195112048,4.56059913554598,0,0,0.203319467126849,0.432021363287205,0.627264888043406,0.218362563746178,0,0.41326727862668,0.523511883968059,1.42576470620972,1.86401793926078,0,0,0,0,0.258319646955462,0,0.469428954583016,0.39061315453185,0,0.241584120826006,0,32.5491454247024,3.24360344464263,8.73043135901032,15.7204195803132,26.6749776544547,30.5969286363148,27.6449533895928,29.5379054349154,32.1073310835109,28.3489320756599,37.8098194263152,42.4916360025321,40.7938208554997,52.1270983729798,0.680191150845634,0.221985953374065,0,0.167884616364078,0.579568782096571,6.38120416534019,3.84618410961257,1.2862102744744,1.50471631210609,0,0,0,0,0,0,0,0,0,0,0,0,0.341467211508268,0.243106717068294,0,0.183843508450014,0.888986911206461,0.412070114477788,0,0.505394423527595,0,0.188626341386076,0.655490552289177,0.448176066834085,0.34461281373368,0,0.231768651889711,0.578727661391115,0,0.294397840268795,0.342869252385415,0.354951612318675,0.715308569841963,0.290692833264657,0.376437521661322,0.423073039458382,0,1.05227884575137,0.271608227691724,0.561142271657738,0.474540072496697,0.492522411877817,0.818462086339379,0.154936841185966,0.578719832943424,0,0.935726433781634,1.07435527024149,0.382576664137687,0.882365676478062,1.62307484934295|short_description=p1@Rinl}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=320435 | |||
|HGNC= | |||
|MCL_coexpression_id=36 | |||
|TSSclassifier=NA | |||
|UniProt=Q80UW3 | |||
|association_with_transcript=0bp_to_ENSMUST00000059857,NM_177158,uc009fzw.2,uc009fzx.2_5end | |||
|cluster_id=chr7:29573974..29574005,+ | |||
|description=CAGE_peak_1_at_Rinl_5end | |||
|id=chr7:29573974..29574005,+ | |||
|ontology_enrichment_celltype=CL:0000084!3.19e-08!11;CL:0000827!3.19e-08!11;CL:0000838!5.28e-08!12;CL:0000791!4.52e-07!9;CL:0000789!4.52e-07!9;CL:0002420!4.52e-07!9;CL:0002419!4.52e-07!9;CL:0000790!4.52e-07!9;CL:0000542!7.28e-07!13;CL:0000051!7.28e-07!13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,2.58e-11,11;CL:0000827,2.58e-11,11;CL:0000838,4.84e-10,12;CL:0000791,1.23e-09,9;CL:0000789,1.23e-09,9;CL:0002420,1.23e-09,9;CL:0002419,1.23e-09,9;CL:0000790,1.23e-09,9;CL:0000542,5.69e-09,13;CL:0000051,5.69e-09,13;CL:0000624,1.19e-08,8;CL:0002031,4.93e-07,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001007!1.04e-13!128;UBERON:0001555!1.04e-13!128;UBERON:0007026!1.04e-13!128;UBERON:0004119!1.07e-13!130;UBERON:0000925!1.07e-13!130;UBERON:0006595!1.07e-13!130;UBERON:0004177!5.16e-13!29;UBERON:0004921!6.27e-13!126;UBERON:0004185!6.27e-13!126;UBERON:0002193!7.85e-11!48;UBERON:0003408!1.95e-10!24;UBERON:0006562!3.31e-10!24;UBERON:0001557!3.31e-10!24;UBERON:0001042!3.31e-10!24;UBERON:0008814!3.31e-10!24;UBERON:0009145!3.31e-10!24;UBERON:0002370!3.59e-10!23;UBERON:0000974!3.59e-10!23;UBERON:0004807!3.59e-10!23;UBERON:0005058!3.59e-10!23;UBERON:0003351!3.59e-10!23;UBERON:0009113!3.59e-10!23;UBERON:0003295!3.59e-10!23;UBERON:0009722!3.59e-10!23;UBERON:0005562!3.59e-10!23;UBERON:0007690!3.59e-10!23;UBERON:0000072!3.67e-10!27;UBERON:0005057!4.14e-10!51;UBERON:0002405!9.89e-10!70;UBERON:0001004!1.54e-09!42;UBERON:0002390!1.68e-09!45;UBERON:0003061!1.68e-09!45;UBERON:0000065!2.95e-09!41;UBERON:0000077!4.55e-09!97;UBERON:0001041!1.31e-08!92;UBERON:0005911!1.90e-08!69;UBERON:0003929!3.46e-08!55;UBERON:0003104!4.89e-07!131;UBERON:0009142!4.89e-07!131 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,7.92e-20,29;UBERON:0005057,7.92e-20,29;UBERON:0000077,4.15e-17,35;UBERON:0002193,1.73e-16,48;UBERON:0002405,1.73e-16,48;UBERON:0003408,5.28e-16,24;UBERON:0002370,1.27e-15,23;UBERON:0000974,1.27e-15,23;UBERON:0004807,1.27e-15,23;UBERON:0005058,1.27e-15,23;UBERON:0003351,1.27e-15,23;UBERON:0009113,1.27e-15,23;UBERON:0003295,1.27e-15,23;UBERON:0009722,1.27e-15,23;UBERON:0005562,1.27e-15,23;UBERON:0007690,1.27e-15,23;UBERON:0006562,1.21e-14,24;UBERON:0001557,1.21e-14,24;UBERON:0001042,1.21e-14,24;UBERON:0008814,1.21e-14,24;UBERON:0009145,1.21e-14,24;UBERON:0002390,1.76e-14,45;UBERON:0003061,1.76e-14,45;UBERON:0004119,5.36e-14,118;UBERON:0000925,5.36e-14,118;UBERON:0006595,5.36e-14,118;UBERON:0001007,9.03e-14,116;UBERON:0001555,9.03e-14,116;UBERON:0007026,9.03e-14,116;UBERON:0004921,8.44e-13,114;UBERON:0000072,3.66e-12,27;UBERON:0001004,8.20e-11,42;UBERON:0000065,2.01e-10,41;UBERON:0003929,5.23e-10,55;UBERON:0005911,8.00e-10,69;UBERON:0001041,1.10e-09,80;UBERON:0000490,2.43e-09,66;UBERON:0007811,4.02e-08,36;UBERON:0002530,2.83e-07,65 | |||
|phase1_expression=0,4.88565570695105,1.36499771816861,0.30246421130683,0.500895729946347,2.85394762250213,4.90586545250604,66.6276348958533,5.91312633037,6.08567768437183,13.0125655851384,14.2792164601652,87.6547737247773,79.8148274085446,1.33243904726265,2.22722794128809,0.699561878128147,7.25562980323947,9.87223921961319,4.66828616977833,1.87095238332354,17.3759164601549,12.015190300391,2.87986361028132,3.89995777814189,5.16808767703518,3.4460959692726,3.01659725760245,1.14014051673824,2.26827116783938,3.54768817048488,0,0,0,0,0.498703936075477,0,75.3356935326434,63.2881629064278,70.152181692489,92.3523436208692,73.7689123755121,87.3918635456076,0,0,0,0,0,0,0,0,0,0.503347818173209,35.5427449585559,44.7004752859477,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.56276261003168,0,0,0,0,0.757261933331841,0,0,0,0,0,0,0,2.24711072210803,0,0,0,0,0,0,0,0.649473123033642,0.506719730950197,0.505524445014783,3.4255163915718,42.4658129181362,2.67195850316685,0.173485326766136,0,0.461230994512117,0.150722640552623,0.23517741427141,0.376999773989026,0,1.15679485535929,10.6153266233985,0.485300549842228,3.3126227769059,2.42437626567611,0,0,0,5.36459815938042,0.838705871541442,1.19980546198682,0.381210681219194,0.149790639404823,0,0,0,0,0,0,0.101839363850316,6.22034853050465,0.252722758433675,0.841767423545896,0.130120442962704,0,0.180062129805349,0,0,0,0,0.258703370739016,0,0,0.175951124163949,0.219195732427575,0.556094498451196,0.348252166522167,0.411564272815887,0.199034266818493,0.702213187313235,0.257347907114715,0.284163499395593,0,0,0,0.23674473558521,0.393528463494808,0,0,0,0.350296027101508,0,0,0,0.584799949701329,0.219550115291051,0.134206418760372,0,0,6.93879444265976,0.793351699990633,0,0.232236671860439,0.515469845288373,0.201683524623343,0.444756087689741,1.33157938278791,1.42358718463353,0,1.00534083520108,1.39269530428806,1.75467678407208,2.69645822596266,1.29682829924817,1.59313018603494,0,0.228497025219458,0,0,0,0,0.189709611372772,0,0.156998727841375,0.370191491765402,0.296452627087149,0.667380422864376,0.393117990226406,0.449724224769707,1.01430060694251,1.68824011826692,2.80088436959562,2.87696137450811,1.29708181420028,2.47105271869273,2.87536413054709,1.11642284300551,0.936113019343682,1.01031551178845,0.358794827043824,0,7.02062122633098,0.189491411770485,0,0.169745085775188,0,0.502518772325447,0,0.195133647857799,1.10344600874334,0.664394068946325,2.07291199254733,3.76885623846197,2.93564469172023,2.16973587872267,0,0,1.47529281905711,2.20749397043786,0.160550589987792,0,0,0.504941854408746,0,0,0,0,0,0,0,0,0,0.321321316421807,0.851640511249612,0.178065603667255,0.325773918707152,2.96946221350564,3.98235415019888,0,0.302323556964751,0.188605079755898,0.590603785761546,0.922305443831782,0,0,0.356497378384721,3.16036757935816,0,0,0,0,0,0,0,0,0,0,3.52007562095566,0,0.882113592219848,1.31909002353184,0.322928853391811,0.180938774784468,0.477489376012546,0.164140899745061,1.7488850197791,0,11.9609616558497,2.06386867963222,6.85219751267933,3.95573759709851,5.74115756428306,6.40578884978263,2.37969801991397,3.07893195112048,4.56059913554598,0,0,0.203319467126849,0.432021363287205,0.627264888043406,0.218362563746178,0,0.41326727862668,0.523511883968059,1.42576470620972,1.86401793926078,0,0,0,0,0.258319646955462,0,0.469428954583016,0.39061315453185,0,0.241584120826006,0,32.5491454247024,3.24360344464263,8.73043135901032,15.7204195803132,26.6749776544547,30.5969286363148,27.6449533895928,29.5379054349154,32.1073310835109,28.3489320756599,37.8098194263152,42.4916360025321,40.7938208554997,52.1270983729798,0.680191150845634,0.221985953374065,0,0.167884616364078,0.579568782096571,6.38120416534019,3.84618410961257,1.2862102744744,1.50471631210609,0,0,0,0,0,0,0,0,0,0,0,0,0.341467211508268,0.243106717068294,0,0.183843508450014,0.888986911206461,0.412070114477788,0,0.505394423527595,0,0.188626341386076,0.655490552289177,0.448176066834085,0.34461281373368,0,0.231768651889711,0.578727661391115,0,0.294397840268795,0.342869252385415,0.354951612318675,0.715308569841963,0.290692833264657,0.376437521661322,0.423073039458382,0,1.05227884575137,0.271608227691724,0.561142271657738,0.474540072496697,0.492522411877817,0.818462086339379,0.154936841185966,0.578719832943424,0,0.935726433781634,1.07435527024149,0.382576664137687,0.882365676478062,1.62307484934295 | |||
|short_description=p1@Rinl | |||
}} |
Latest revision as of 13:12, 26 September 2015
Short description: | p1@Rinl |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rinl_5end |
Coexpression cluster: | MCL_coexpression_mm9:36 |
Association with transcript: | 0bp_to_ENSMUST00000059857, NM_177158, uc009fzw.2, uc009fzx.2_5end |
EntrezGene: | Rinl |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 2.58e-11 | 11 |
pro-T cell | 2.58e-11 | 11 |
lymphoid lineage restricted progenitor cell | 4.84e-10 | 12 |
mature alpha-beta T cell | 1.23e-09 | 9 |
alpha-beta T cell | 1.23e-09 | 9 |
immature T cell | 1.23e-09 | 9 |
mature T cell | 1.23e-09 | 9 |
immature alpha-beta T cell | 1.23e-09 | 9 |
lymphocyte | 5.69e-09 | 13 |
common lymphoid progenitor | 5.69e-09 | 13 |
CD4-positive, alpha-beta T cell | 1.19e-08 | 8 |
hematopoietic lineage restricted progenitor cell | 4.93e-07 | 25 |