FF:10014-101C5: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005815 | |DRA_sample_Accession=CAGE@SAMD00005815 | ||
|accession_numbers=CAGE;DRX008638;DRR009510;DRZ000935;DRZ002320 | |accession_numbers=CAGE;DRX008638;DRR009510;DRZ000935;DRZ002320;DRZ012285;DRZ013670 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001155,UBERON:0000160,UBERON:0000479,UBERON:0001007,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001555,UBERON:0000059,UBERON:0005409 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001155,UBERON:0000160,UBERON:0000479,UBERON:0001007,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001555,UBERON:0000059,UBERON:0005409 | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase= | |data_phase=2 | ||
|datafreeze_phase= | |datafreeze_phase=2 | ||
|def= | |def= | ||
|expression_enrichment_score=chr1:201979743..201979762,+!p1@ELF3!2.25!176.12!ELF3;;chr19:4153613..4153652,+!p1@CREB3L3!2.25!175.59!CREB3L3;;chr5:149546334..149546364,+!p1@CDX1!2.09!123.31!CDX1;;chr4:174451370..174451387,-!p1@HAND2!1.93!84.57!HAND2;;chr8:76319876..76319926,+!p1@HNF4G!1.93!83.95!HNF4G;;chr1:201979703..201979721,+!p2@ELF3!1.88!75.72!ELF3;;chr8:76452097..76452126,+!p2@HNF4G!1.80!61.83!HNF4G;;chr20:43029862..43029900,+!p1@HNF4A!1.79!61.30!HNF4A;;chr6:134210243..134210257,+!p1@TCF21!1.79!60.86!TCF21;;chr16:86544113..86544145,+!p1@FOXF1!1.77!71.12!FOXF1;;chr13:28543431..28543487,-!p1@CDX2!1.73!52.10!CDX2;;chr7:73038839..73038862,-!p1@MLXIPL!1.65!43.52!MLXIPL;;chr3:12330560..12330579,+!p1@PPARG!1.64!48.56!PPARG;;chr19:46801639..46801699,+!p1@HIF3A!1.64!42.55!HIF3A;;chr19:50922187..50922204,+!p1@SPIB!1.64!42.19!SPIB;;chr20:42984330..42984364,+!p2@HNF4A!1.58!36.89!HNF4A;;chr13:73633131..73633149,+!p1@KLF5!1.52!327.91!KLF5;;chr16:79634595..79634620,-!p2@MAF!1.51!55.73!MAF;;chr6:391743..391759,+!p1@IRF4!1.47!28.31!IRF4;;chr16:79634624..79634642,-!p1@MAF!1.45!103.76!MAF;;chr16:85932760..85932775,+!p1@IRF8!1.45!27.42!IRF8;;chr11:113930291..113930339,+!p2@ZBTB16!1.43!41.93!ZBTB16;;chr11:113930425..113930471,+!p1@ZBTB16!1.43!37.33!ZBTB16;;chr13:28494130..28494168,+!p1@PDX1!1.43!26.18!PDX1;;chr11:16419037..16419064,-!p3@SOX6!1.43!25.74!SOX6;;chr13:28543285..28543314,-!p2@CDX2!1.41!24.50!CDX2;;chr8:11561684..11561751,+!p1@GATA4!1.39!23.62!GATA4;;chr11:111249993..111250006,-!p1@POU2AF1!1.38!23.18!POU2AF1;;chr20:62680984..62680999,-!p1@SOX18!1.37!29.72!SOX18;;chr6:1389789..1389821,+!p1@FOXF2!1.36!29.63!FOXF2;;chr3:119500941..119500961,+!p1@NR1I2!1.36!22.03!NR1I2;;chr11:34642612..34642646,+!p1@EHF!1.35!21.41!EHF;;chrY:21906594..21906622,-!p1@KDM5D!1.35!21.23!KDM5D;;chr5:153857778..153857794,-!p1@HAND1!1.34!20.96!HAND1;;chr18:55102598..55102623,+!p1@ONECUT2!1.34!20.70!ONECUT2;;chr1:151804244..151804310,-!p1@RORC!1.33!20.61!RORC;;chr7:27192185..27192209,-!p1@HOXA3!1.32!19.99!HOXA3;;chr8:76452129..76452159,+!p5@HNF4G!1.30!18.84!HNF4G;;chr8:55370487..55370503,+!p1@SOX17!1.29!18.58!SOX17;;chr1:27240455..27240474,-!p1@NR0B2!1.29!18.40!NR0B2;;chr18:55102628..55102646,+!p2@ONECUT2!1.27!17.78!ONECUT2;;chr4:94749897..94749909,+!p1@ATOH1!1.25!16.81!ATOH1;;chr11:47400078..47400106,-!p1@SPI1!1.25!16.63!SPI1;;chr13:28543388..28543406,-!p3@CDX2!1.23!16.01!CDX2;;chr20:61051039..61051057,-!p1@GATA5!1.23!16.01!GATA5;;chr22:38380543..38380569,-!p1@SOX10!1.23!15.92!SOX10;;chr1:199996831..199996843,+!p4@NR5A2!1.23!15.83!NR5A2;;chr12:48298765..48298783,-!p2@VDR!1.22!32.20!VDR;;chr1:199996733..199996781,+!p1@NR5A2!1.22!15.48!NR5A2;;chr12:52437488..52437507,+!p2@NR4A1!1.21!15.21!NR4A1;;chr10:48355030..48355090,+!p1@ZNF488!1.20!19.11!ZNF488;;chr18:19749386..19749404,+!p2@GATA6!1.19!20.70!GATA6;;chr6:135502501..135502546,+!p1@MYB!1.19!17.25!MYB;;chr1:42801540..42801562,-!p4@FOXJ3!1.19!14.42!FOXJ3;;chr4:149363494..149363543,-!p1@NR3C2!1.19!14.33!NR3C2;;chr18:19749541..19749557,+!p1@GATA6!1.18!44.58!GATA6;;chr4:174451350..174451363,-!p3@HAND2!1.18!13.98!HAND2;;chr2:19558373..19558392,-!p1@OSR1!1.17!37.68!OSR1;;chr13:72441315..72441454,-!p1@DACH1!1.17!27.69!DACH1;;chr17:53342311..53342400,+!p1@HLF!1.17!15.83!HLF;;chr17:46682321..46682362,-!p1@HOXB6!1.17!13.71!HOXB6;;chr21:39870339..39870443,-!p1@ERG!1.16!13.45!ERG;;chr4:149363475..149363492,-!p2@NR3C2!1.16!13.36!NR3C2;;chr7:113726357..113726443,+!p1@FOXP2!1.15!22.56!FOXP2;;chr10:101292684..101292706,+!p1@NKX2-3!1.15!13.27!NKX2-3;;chr8:102504651..102504683,+!p1@GRHL2!1.14!12.83!GRHL2;;chr19:46367576..46367592,+!p1@FOXA3!1.14!12.74!FOXA3;;chr16:79634581..79634592,-!p4@MAF!1.14!12.65!MAF;;chr1:214161272..214161322,+!p1@PROX1!1.12!17.16!PROX1;;chr1:40105299..40105326,-!p1@HEYL!1.11!11.76!HEYL;;chr6:34524093..34524135,-!p1@SPDEF!1.10!11.68!SPDEF;;chr4:57547454..57547469,-!p1@HOPX!1.10!11.59!HOPX;;chr2:70142232..70142251,+!p1@MXD1!1.09!64.22!MXD1;;chr12:121416340..121416360,+!p1@HNF1A!1.09!11.41!HNF1A;;chr20:50159198..50159299,-!p1@NFATC2!1.08!16.36!NFATC2;;chr7:27205136..27205164,-!p1@HOXA9!1.08!11.06!HOXA9;;chr4:174450089..174450153,-!p2@HAND2!1.08!11.06!HAND2;;chr2:182545234..182545252,-!p1@NEUROD1!1.07!10.61!NEUROD1;;chr11:12696579..12696611,+!p4@TEAD1!1.07!10.61!TEAD1;;chr11:61520075..61520136,+!p1@C11orf9!1.06!22.29!C11orf9;;chr13:28543253..28543276,-!p5@CDX2!1.06!10.53!CDX2;;chr14:38064429..38064486,-!p1@FOXA1!1.06!10.44!FOXA1;;chr12:100897130..100897149,+!p3@NR1H4!1.05!10.26!NR1H4;;chr2:68592406..68592424,+!p1@PLEK!1.05!10.17!PLEK;;chr20:51588873..51588953,+!p1@TSHZ2!1.04!13.18!TSHZ2;;chr1:209979467..209979494,-!p1@IRF6!1.04!11.32!IRF6;;chr11:113930401..113930422,+!p3@ZBTB16!1.03!9.82!ZBTB16;;chr13:28543316..28543329,-!p4@CDX2!1.03!9.73!CDX2;;chr12:52445218..52445237,+!p1@NR4A1!1.02!121.54!NR4A1;;chr7:27213893..27213954,-!p1@HOXA10!1.02!9.38!HOXA10;;chr3:169381420..169381535,-!p1@MECOM!1.01!10.88!MECOM;;chr1:25291475..25291511,-!p2@RUNX3!1.01!9.29!RUNX3;;chr1:10856639..10856662,-!p2@CASZ1!1.01!9.20!CASZ1;;chrX:107018969..107019024,-!p6@TSC22D3!1.00!12.47!TSC22D3;;chr7:137620650..137620677,-!p3@CREB3L2!1.00!9.11!CREB3L2;;chr19:33793430..33793447,-!p1@CEBPA!0.99!37.59!CEBPA;;chr3:126076242..126076257,-!p1@KLF15!0.99!10.97!KLF15;;chr11:34664014..34664045,+!p4@EHF!0.99!8.76!EHF;;chr17:38498594..38498661,+!p2@RARA!0.98!29.37!RARA;;chr1:61548225..61548299,+!p1@NFIA!0.97!113.14!NFIA;;chr1:10856665..10856683,-!p4@CASZ1!0.97!8.23!CASZ1;;chr8:71316428..71316459,-!p2@NCOA2!0.96!13.89!NCOA2;;chrX:106960285..106960299,-!p1@TSC22D3!0.95!221.06!TSC22D3;;chr6:106534192..106534224,+!p1@PRDM1!0.95!23.00!PRDM1;;chr11:65554528..65554546,+!p1@OVOL1!0.95!7.96!OVOL1;;chr2:122042770..122042785,-!p1@TFCP2L1!0.95!7.96!TFCP2L1;;chr1:209979411..209979433,-!p2@IRF6!0.94!7.70!IRF6;;chr7:27224842..27224872,-!p1@HOXA11!0.93!7.43!HOXA11;;chr5:88178983..88179012,-!p1@MEF2C!0.92!59.27!MEF2C;;chr1:164528410..164528428,+!p1@PBX1!0.92!57.76!PBX1;;chr8:10588010..10588030,-!p1@SOX7!0.92!7.34!SOX7;;chr11:34645791..34645836,+!p3@EHF!0.92!7.34!EHF;;chr9:73028814..73028895,-!p1@KLF9!0.91!74.57!KLF9;;chr4:26165074..26165110,+!p9@RBPJ!0.91!7.17!RBPJ;;chr11:129245526..129245553,+!p1@BARX2!0.91!7.08!BARX2;;chr2:60780753..60780800,-!p1@BCL11A!0.90!35.38!BCL11A;;chr16:79634464..79634493,-!p5@MAF!0.90!6.99!MAF;;chr1:2985760..2985774,+!p1@PRDM16!0.90!6.90!PRDM16;;chr2:46524897..46524911,+!p2@EPAS1!0.89!19.73!EPAS1;;chr7:114054885..114054910,+!p4@FOXP2!0.89!6.81!FOXP2;;chr7:27224795..27224840,-!p2@HOXA11!0.89!6.81!HOXA11;;chr3:69788576..69788648,+!p1@MITF!0.88!36.53!MITF;;chr2:145277882..145277967,-!p3@ZEB2!0.88!11.59!ZEB2;;chr18:53068911..53068935,-!p4@TCF4!0.88!7.43!TCF4;;chr11:65554563..65554576,+!p2@OVOL1!0.88!6.63!OVOL1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.88!6.63!PEG3;;chr1:200011711..200011752,+!p3@NR5A2!0.88!6.63!NR5A2;;chr19:46806868..46806883,+!p3@HIF3A!0.88!6.55!HIF3A;;chr20:18038521..18038571,-!p1@OVOL2!0.88!6.55!OVOL2;;chr5:71803177..71803255,-!p1@ZNF366!0.88!6.55!ZNF366;;chr18:72922811..72922827,+!p1@TSHZ1!0.87!33.17!TSHZ1;;chr2:66662281..66662308,+!p1@MEIS1!0.87!23.35!MEIS1;;chr3:141868230..141868250,-!p6@TFDP2!0.87!7.96!TFDP2;;chr11:47279248..47279264,+!p3@NR1H3!0.87!7.34!NR1H3;;chr8:11534438..11534451,+!p3@GATA4!0.87!6.37!GATA4;;chr1:61548069..61548102,+!p3@NFIA!0.86!15.92!NFIA;;chr15:42749722..42749739,-!p2@ZFP106!0.86!11.50!ZFP106;;chr17:36105042..36105060,-!p1@HNF1B!0.86!6.19!HNF1B;;chr20:20348740..20348757,+!p1@INSM1!0.86!6.19!INSM1;;chr8:60031682..60031710,-!p2@TOX!0.85!10.17!TOX;;chr6:36355513..36355578,-!p2@ETV7!0.85!7.78!ETV7;;chr6:1389989..1390019,+!p2@FOXF2!0.85!6.10!FOXF2;;chr1:10856694..10856715,-!p3@CASZ1!0.85!6.10!CASZ1;;chr11:34642656..34642667,+!p2@EHF!0.85!6.02!EHF;;chr3:114819124..114819200,-!p3@ZBTB20!0.84!14.42!ZBTB20;;chr1:221052840..221052875,+!p4@HLX!0.84!7.08!HLX;;chr3:141043050..141043063,+!p22@ZBTB38!0.84!5.93!ZBTB38;;chr2:60780607..60780624,-!p2@BCL11A!0.83!18.58!BCL11A;;chr11:47279504..47279563,+!p1@NR1H3!0.83!13.71!NR1H3;;chr1:10754477..10754517,-!p1@CASZ1!0.83!9.91!CASZ1;;chr22:29196433..29196445,-!p4@XBP1!0.83!6.37!XBP1;;chr7:63505799..63505904,+!p1@ZNF727!0.83!5.84!ZNF727;;chr7:137620684..137620711,-!p4@CREB3L2!0.83!5.75!CREB3L2;;chr7:15726296..15726315,-!p1@MEOX2!0.83!5.75!MEOX2;;chr1:164528445..164528459,+!p2@PBX1!0.82!18.84!PBX1;;chr1:61547894..61547968,+!p2@NFIA!0.82!17.16!NFIA;;chr3:126076264..126076305,-!p2@KLF15!0.82!7.96!KLF15;;chr3:128212033..128212051,-!p1@GATA2!0.82!5.66!GATA2;;chr8:25902876..25902936,-!p1@EBF2!0.82!5.66!EBF2;;chr16:52581025..52581072,-!p1@TOX3!0.82!5.66!TOX3;;chr6:1389824..1389840,+!p3@FOXF2!0.82!5.57!FOXF2;;chr17:38256822..38256851,-!p1@NR1D1!0.81!46.35!NR1D1;;chrX:70315688..70315709,+!p1@FOXO4!0.81!13.53!FOXO4;;chr1:61548374..61548415,+!p4@NFIA!0.81!10.70!NFIA;;chr2:176994408..176994492,+!p1@HOXD8!0.81!5.48!HOXD8;;chr3:63953435..63953499,+!p1@ATXN7!0.81!5.40!ATXN7;;chr7:44143925..44143970,+!p1@AEBP1!0.80!129.24!AEBP1;;chr11:46299199..46299233,+!p1@CREB3L1!0.80!29.81!CREB3L1;;chr20:43030002..43030028,+!p3@HNF4A!0.80!5.31!HNF4A;;chr9:14314566..14314618,-!p1@NFIB!0.79!67.32!NFIB;;chr17:46621937..46621966,-!p2@HOXB2!0.79!15.04!HOXB2;;chr8:60031762..60031803,-!p3@TOX!0.79!7.78!TOX;;chr7:156803329..156803362,-!p1@MNX1!0.79!5.22!MNX1;;chr7:27239703..27239715,-!p1@HOXA13!0.79!5.13!HOXA13;;chr10:51572408..51572454,+!p3@NCOA4!0.78!31.76!NCOA4;;chr3:114866084..114866118,-!p2@ZBTB20!0.78!19.46!ZBTB20;;chr17:7492684..7492778,-!p2@SOX15!0.78!11.23!SOX15;;chr2:66662249..66662267,+!p2@MEIS1!0.77!20.52!MEIS1;;chr9:127533519..127533573,-!p2@NR6A1!0.77!6.10!NR6A1;;chr3:141043020..141043049,+!p17@ZBTB38!0.77!4.95!ZBTB38;;chr17:53344945..53344977,+!p2@HLF!0.77!4.87!HLF;;chr7:15726243..15726293,-!p2@MEOX2!0.77!4.87!MEOX2;;chr7:97840743..97840786,+!p1@BHLHA15!0.77!4.87!BHLHA15;;chr8:48650715..48650735,-!p1@CEBPD!0.76!666.44!CEBPD;;chr10:114709999..114710031,+!p1@TCF7L2!0.76!123.84!TCF7L2;;chr3:18466787..18466839,-!p1@SATB1!0.76!23.18!SATB1;;chr16:79633894..79633954,-!p3@MAF!0.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| |expression_enrichment_score=chr1:201979743..201979762,+!p1@ELF3!2.25!176.12!ELF3;;chr19:4153613..4153652,+!p1@CREB3L3!2.25!175.59!CREB3L3;;chr5:149546334..149546364,+!p1@CDX1!2.09!123.31!CDX1;;chr4:174451370..174451387,-!p1@HAND2!1.93!84.57!HAND2;;chr8:76319876..76319926,+!p1@HNF4G!1.93!83.95!HNF4G;;chr1:201979703..201979721,+!p2@ELF3!1.88!75.72!ELF3;;chr8:76452097..76452126,+!p2@HNF4G!1.80!61.83!HNF4G;;chr20:43029862..43029900,+!p1@HNF4A!1.79!61.30!HNF4A;;chr6:134210243..134210257,+!p1@TCF21!1.79!60.86!TCF21;;chr16:86544113..86544145,+!p1@FOXF1!1.77!71.12!FOXF1;;chr13:28543431..28543487,-!p1@CDX2!1.73!52.10!CDX2;;chr7:73038839..73038862,-!p1@MLXIPL!1.65!43.52!MLXIPL;;chr3:12330560..12330579,+!p1@PPARG!1.64!48.56!PPARG;;chr19:46801639..46801699,+!p1@HIF3A!1.64!42.55!HIF3A;;chr19:50922187..50922204,+!p1@SPIB!1.64!42.19!SPIB;;chr20:42984330..42984364,+!p2@HNF4A!1.58!36.89!HNF4A;;chr13:73633131..73633149,+!p1@KLF5!1.52!327.91!KLF5;;chr16:79634595..79634620,-!p2@MAF!1.51!55.73!MAF;;chr6:391743..391759,+!p1@IRF4!1.47!28.31!IRF4;;chr16:79634624..79634642,-!p1@MAF!1.45!103.76!MAF;;chr16:85932760..85932775,+!p1@IRF8!1.45!27.42!IRF8;;chr11:113930291..113930339,+!p2@ZBTB16!1.43!41.93!ZBTB16;;chr11:113930425..113930471,+!p1@ZBTB16!1.43!37.33!ZBTB16;;chr13:28494130..28494168,+!p1@PDX1!1.43!26.18!PDX1;;chr11:16419037..16419064,-!p3@SOX6!1.43!25.74!SOX6;;chr13:28543285..28543314,-!p2@CDX2!1.41!24.50!CDX2;;chr8:11561684..11561751,+!p1@GATA4!1.39!23.62!GATA4;;chr11:111249993..111250006,-!p1@POU2AF1!1.38!23.18!POU2AF1;;chr20:62680984..62680999,-!p1@SOX18!1.37!29.72!SOX18;;chr6:1389789..1389821,+!p1@FOXF2!1.36!29.63!FOXF2;;chr3:119500941..119500961,+!p1@NR1I2!1.36!22.03!NR1I2;;chr11:34642612..34642646,+!p1@EHF!1.35!21.41!EHF;;chrY:21906594..21906622,-!p1@KDM5D!1.35!21.23!KDM5D;;chr5:153857778..153857794,-!p1@HAND1!1.34!20.96!HAND1;;chr18:55102598..55102623,+!p1@ONECUT2!1.34!20.70!ONECUT2;;chr1:151804244..151804310,-!p1@RORC!1.33!20.61!RORC;;chr7:27192185..27192209,-!p1@HOXA3!1.32!19.99!HOXA3;;chr8:76452129..76452159,+!p5@HNF4G!1.30!18.84!HNF4G;;chr8:55370487..55370503,+!p1@SOX17!1.29!18.58!SOX17;;chr1:27240455..27240474,-!p1@NR0B2!1.29!18.40!NR0B2;;chr18:55102628..55102646,+!p2@ONECUT2!1.27!17.78!ONECUT2;;chr4:94749897..94749909,+!p1@ATOH1!1.25!16.81!ATOH1;;chr11:47400078..47400106,-!p1@SPI1!1.25!16.63!SPI1;;chr13:28543388..28543406,-!p3@CDX2!1.23!16.01!CDX2;;chr20:61051039..61051057,-!p1@GATA5!1.23!16.01!GATA5;;chr22:38380543..38380569,-!p1@SOX10!1.23!15.92!SOX10;;chr1:199996831..199996843,+!p4@NR5A2!1.23!15.83!NR5A2;;chr12:48298765..48298783,-!p2@VDR!1.22!32.20!VDR;;chr1:199996733..199996781,+!p1@NR5A2!1.22!15.48!NR5A2;;chr12:52437488..52437507,+!p2@NR4A1!1.21!15.21!NR4A1;;chr10:48355030..48355090,+!p1@ZNF488!1.20!19.11!ZNF488;;chr18:19749386..19749404,+!p2@GATA6!1.19!20.70!GATA6;;chr6:135502501..135502546,+!p1@MYB!1.19!17.25!MYB;;chr1:42801540..42801562,-!p4@FOXJ3!1.19!14.42!FOXJ3;;chr4:149363494..149363543,-!p1@NR3C2!1.19!14.33!NR3C2;;chr18:19749541..19749557,+!p1@GATA6!1.18!44.58!GATA6;;chr4:174451350..174451363,-!p3@HAND2!1.18!13.98!HAND2;;chr2:19558373..19558392,-!p1@OSR1!1.17!37.68!OSR1;;chr13:72441315..72441454,-!p1@DACH1!1.17!27.69!DACH1;;chr17:53342311..53342400,+!p1@HLF!1.17!15.83!HLF;;chr17:46682321..46682362,-!p1@HOXB6!1.17!13.71!HOXB6;;chr21:39870339..39870443,-!p1@ERG!1.16!13.45!ERG;;chr4:149363475..149363492,-!p2@NR3C2!1.16!13.36!NR3C2;;chr7:113726357..113726443,+!p1@FOXP2!1.15!22.56!FOXP2;;chr10:101292684..101292706,+!p1@NKX2-3!1.15!13.27!NKX2-3;;chr8:102504651..102504683,+!p1@GRHL2!1.14!12.83!GRHL2;;chr19:46367576..46367592,+!p1@FOXA3!1.14!12.74!FOXA3;;chr16:79634581..79634592,-!p4@MAF!1.14!12.65!MAF;;chr1:214161272..214161322,+!p1@PROX1!1.12!17.16!PROX1;;chr1:40105299..40105326,-!p1@HEYL!1.11!11.76!HEYL;;chr6:34524093..34524135,-!p1@SPDEF!1.10!11.68!SPDEF;;chr4:57547454..57547469,-!p1@HOPX!1.10!11.59!HOPX;;chr2:70142232..70142251,+!p1@MXD1!1.09!64.22!MXD1;;chr12:121416340..121416360,+!p1@HNF1A!1.09!11.41!HNF1A;;chr20:50159198..50159299,-!p1@NFATC2!1.08!16.36!NFATC2;;chr7:27205136..27205164,-!p1@HOXA9!1.08!11.06!HOXA9;;chr4:174450089..174450153,-!p2@HAND2!1.08!11.06!HAND2;;chr2:182545234..182545252,-!p1@NEUROD1!1.07!10.61!NEUROD1;;chr11:12696579..12696611,+!p4@TEAD1!1.07!10.61!TEAD1;;chr11:61520075..61520136,+!p1@C11orf9!1.06!22.29!C11orf9;;chr13:28543253..28543276,-!p5@CDX2!1.06!10.53!CDX2;;chr14:38064429..38064486,-!p1@FOXA1!1.06!10.44!FOXA1;;chr12:100897130..100897149,+!p3@NR1H4!1.05!10.26!NR1H4;;chr2:68592406..68592424,+!p1@PLEK!1.05!10.17!PLEK;;chr20:51588873..51588953,+!p1@TSHZ2!1.04!13.18!TSHZ2;;chr1:209979467..209979494,-!p1@IRF6!1.04!11.32!IRF6;;chr11:113930401..113930422,+!p3@ZBTB16!1.03!9.82!ZBTB16;;chr13:28543316..28543329,-!p4@CDX2!1.03!9.73!CDX2;;chr12:52445218..52445237,+!p1@NR4A1!1.02!121.54!NR4A1;;chr7:27213893..27213954,-!p1@HOXA10!1.02!9.38!HOXA10;;chr3:169381420..169381535,-!p1@MECOM!1.01!10.88!MECOM;;chr1:25291475..25291511,-!p2@RUNX3!1.01!9.29!RUNX3;;chr1:10856639..10856662,-!p2@CASZ1!1.01!9.20!CASZ1;;chrX:107018969..107019024,-!p6@TSC22D3!1.00!12.47!TSC22D3;;chr7:137620650..137620677,-!p3@CREB3L2!1.00!9.11!CREB3L2;;chr19:33793430..33793447,-!p1@CEBPA!0.99!37.59!CEBPA;;chr3:126076242..126076257,-!p1@KLF15!0.99!10.97!KLF15;;chr11:34664014..34664045,+!p4@EHF!0.99!8.76!EHF;;chr17:38498594..38498661,+!p2@RARA!0.98!29.37!RARA;;chr1:61548225..61548299,+!p1@NFIA!0.97!113.14!NFIA;;chr1:10856665..10856683,-!p4@CASZ1!0.97!8.23!CASZ1;;chr8:71316428..71316459,-!p2@NCOA2!0.96!13.89!NCOA2;;chrX:106960285..106960299,-!p1@TSC22D3!0.95!221.06!TSC22D3;;chr6:106534192..106534224,+!p1@PRDM1!0.95!23.00!PRDM1;;chr11:65554528..65554546,+!p1@OVOL1!0.95!7.96!OVOL1;;chr2:122042770..122042785,-!p1@TFCP2L1!0.95!7.96!TFCP2L1;;chr1:209979411..209979433,-!p2@IRF6!0.94!7.70!IRF6;;chr7:27224842..27224872,-!p1@HOXA11!0.93!7.43!HOXA11;;chr5:88178983..88179012,-!p1@MEF2C!0.92!59.27!MEF2C;;chr1:164528410..164528428,+!p1@PBX1!0.92!57.76!PBX1;;chr8:10588010..10588030,-!p1@SOX7!0.92!7.34!SOX7;;chr11:34645791..34645836,+!p3@EHF!0.92!7.34!EHF;;chr9:73028814..73028895,-!p1@KLF9!0.91!74.57!KLF9;;chr4:26165074..26165110,+!p9@RBPJ!0.91!7.17!RBPJ;;chr11:129245526..129245553,+!p1@BARX2!0.91!7.08!BARX2;;chr2:60780753..60780800,-!p1@BCL11A!0.90!35.38!BCL11A;;chr16:79634464..79634493,-!p5@MAF!0.90!6.99!MAF;;chr1:2985760..2985774,+!p1@PRDM16!0.90!6.90!PRDM16;;chr2:46524897..46524911,+!p2@EPAS1!0.89!19.73!EPAS1;;chr7:114054885..114054910,+!p4@FOXP2!0.89!6.81!FOXP2;;chr7:27224795..27224840,-!p2@HOXA11!0.89!6.81!HOXA11;;chr3:69788576..69788648,+!p1@MITF!0.88!36.53!MITF;;chr2:145277882..145277967,-!p3@ZEB2!0.88!11.59!ZEB2;;chr18:53068911..53068935,-!p4@TCF4!0.88!7.43!TCF4;;chr11:65554563..65554576,+!p2@OVOL1!0.88!6.63!OVOL1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.88!6.63!PEG3;;chr1:200011711..200011752,+!p3@NR5A2!0.88!6.63!NR5A2;;chr19:46806868..46806883,+!p3@HIF3A!0.88!6.55!HIF3A;;chr20:18038521..18038571,-!p1@OVOL2!0.88!6.55!OVOL2;;chr5:71803177..71803255,-!p1@ZNF366!0.88!6.55!ZNF366;;chr18:72922811..72922827,+!p1@TSHZ1!0.87!33.17!TSHZ1;;chr2:66662281..66662308,+!p1@MEIS1!0.87!23.35!MEIS1;;chr3:141868230..141868250,-!p6@TFDP2!0.87!7.96!TFDP2;;chr11:47279248..47279264,+!p3@NR1H3!0.87!7.34!NR1H3;;chr8:11534438..11534451,+!p3@GATA4!0.87!6.37!GATA4;;chr1:61548069..61548102,+!p3@NFIA!0.86!15.92!NFIA;;chr15:42749722..42749739,-!p2@ZFP106!0.86!11.50!ZFP106;;chr17:36105042..36105060,-!p1@HNF1B!0.86!6.19!HNF1B;;chr20:20348740..20348757,+!p1@INSM1!0.86!6.19!INSM1;;chr8:60031682..60031710,-!p2@TOX!0.85!10.17!TOX;;chr6:36355513..36355578,-!p2@ETV7!0.85!7.78!ETV7;;chr6:1389989..1390019,+!p2@FOXF2!0.85!6.10!FOXF2;;chr1:10856694..10856715,-!p3@CASZ1!0.85!6.10!CASZ1;;chr11:34642656..34642667,+!p2@EHF!0.85!6.02!EHF;;chr3:114819124..114819200,-!p3@ZBTB20!0.84!14.42!ZBTB20;;chr1:221052840..221052875,+!p4@HLX!0.84!7.08!HLX;;chr3:141043050..141043063,+!p22@ZBTB38!0.84!5.93!ZBTB38;;chr2:60780607..60780624,-!p2@BCL11A!0.83!18.58!BCL11A;;chr11:47279504..47279563,+!p1@NR1H3!0.83!13.71!NR1H3;;chr1:10754477..10754517,-!p1@CASZ1!0.83!9.91!CASZ1;;chr22:29196433..29196445,-!p4@XBP1!0.83!6.37!XBP1;;chr7:63505799..63505904,+!p1@ZNF727!0.83!5.84!ZNF727;;chr7:137620684..137620711,-!p4@CREB3L2!0.83!5.75!CREB3L2;;chr7:15726296..15726315,-!p1@MEOX2!0.83!5.75!MEOX2;;chr1:164528445..164528459,+!p2@PBX1!0.82!18.84!PBX1;;chr1:61547894..61547968,+!p2@NFIA!0.82!17.16!NFIA;;chr3:126076264..126076305,-!p2@KLF15!0.82!7.96!KLF15;;chr3:128212033..128212051,-!p1@GATA2!0.82!5.66!GATA2;;chr8:25902876..25902936,-!p1@EBF2!0.82!5.66!EBF2;;chr16:52581025..52581072,-!p1@TOX3!0.82!5.66!TOX3;;chr6:1389824..1389840,+!p3@FOXF2!0.82!5.57!FOXF2;;chr17:38256822..38256851,-!p1@NR1D1!0.81!46.35!NR1D1;;chrX:70315688..70315709,+!p1@FOXO4!0.81!13.53!FOXO4;;chr1:61548374..61548415,+!p4@NFIA!0.81!10.70!NFIA;;chr2:176994408..176994492,+!p1@HOXD8!0.81!5.48!HOXD8;;chr3:63953435..63953499,+!p1@ATXN7!0.81!5.40!ATXN7;;chr7:44143925..44143970,+!p1@AEBP1!0.80!129.24!AEBP1;;chr11:46299199..46299233,+!p1@CREB3L1!0.80!29.81!CREB3L1;;chr20:43030002..43030028,+!p3@HNF4A!0.80!5.31!HNF4A;;chr9:14314566..14314618,-!p1@NFIB!0.79!67.32!NFIB;;chr17:46621937..46621966,-!p2@HOXB2!0.79!15.04!HOXB2;;chr8:60031762..60031803,-!p3@TOX!0.79!7.78!TOX;;chr7:156803329..156803362,-!p1@MNX1!0.79!5.22!MNX1;;chr7:27239703..27239715,-!p1@HOXA13!0.79!5.13!HOXA13;;chr10:51572408..51572454,+!p3@NCOA4!0.78!31.76!NCOA4;;chr3:114866084..114866118,-!p2@ZBTB20!0.78!19.46!ZBTB20;;chr17:7492684..7492778,-!p2@SOX15!0.78!11.23!SOX15;;chr2:66662249..66662267,+!p2@MEIS1!0.77!20.52!MEIS1;;chr9:127533519..127533573,-!p2@NR6A1!0.77!6.10!NR6A1;;chr3:141043020..141043049,+!p17@ZBTB38!0.77!4.95!ZBTB38;;chr17:53344945..53344977,+!p2@HLF!0.77!4.87!HLF;;chr7:15726243..15726293,-!p2@MEOX2!0.77!4.87!MEOX2;;chr7:97840743..97840786,+!p1@BHLHA15!0.77!4.87!BHLHA15;;chr8:48650715..48650735,-!p1@CEBPD!0.76!666.44!CEBPD;;chr10:114709999..114710031,+!p1@TCF7L2!0.76!123.84!TCF7L2;;chr3:18466787..18466839,-!p1@SATB1!0.76!23.18!SATB1;;chr16:79633894..79633954,-!p3@MAF!0.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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000160;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001155;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005409 | |||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0010316 | |ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0010316 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 41: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/colon%252c%2520adult%252c%2520pool1.CNhs10619.10014-101C5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/colon%252c%2520adult%252c%2520pool1.CNhs10619.10014-101C5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/colon%252c%2520adult%252c%2520pool1.CNhs10619.10014-101C5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/colon%252c%2520adult%252c%2520pool1.CNhs10619.10014-101C5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/colon%252c%2520adult%252c%2520pool1.CNhs10619.10014-101C5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10014-101C5 | |id=FF:10014-101C5 | ||
|is_a=EFO:0002091;;FF:0010014 | |is_a=EFO:0002091;;FF:0010014 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs10619 | |library_id=CNhs10619 | ||
|library_id_phase_based= | |library_id_phase_based=2:CNhs10619 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10014 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10014 | |||
|name=colon, adult, pool1 | |name=colon, adult, pool1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 51: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10619,LSID656,release008,COMPLETED | |profile_hcage=CNhs10619,LSID656,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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|top_motifs=HNF4A_NR2F1,2:6.17982717821;HNF1A:4.1852458009;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.97743531193;GATA6:2.51497333229;NR1H4:2.2229534358;SP1:2.18869153487;AR:2.01657536191;SNAI1..3:2.01585090536;T:1.95110676896;ZEB1:1.88711902113;MTF1:1.8763845941;ESRRA:1.80579235391;TBP:1.78992475971;SRF:1.72541256102;FOX{D1,D2}:1.71032168487;FOX{F1,F2,J1}:1.66207819773;TFCP2:1.64285819161;MAZ:1.62463376666;RBPJ:1.59934929512;TFAP2{A,C}:1.52513301289;XCPE1{core}:1.52460054935;SPZ1:1.51533851241;FOXA2:1.44203958121;FOXL1:1.43058622419;ZNF148:1.323126132;NANOG:1.29955082283;MYBL2:1.25673112396;FOXO1,3,4:1.25354444089;TLX1..3_NFIC{dimer}:1.23450016649;MYFfamily:1.22187521752;ATF6:1.21176817819;PAX6:1.20889638508;PATZ1:1.20169125418;POU5F1:1.15756647484;EP300:1.15553788715;NR3C1:1.13263777733;MYOD1:1.12941365457;FOX{I1,J2}:1.10348555054;MTE{core}:1.05577815381;GTF2I:1.04681401936;ADNP_IRX_SIX_ZHX:1.04596752184;HIC1:1.02913352185;NFATC1..3:1.02037708555;TFAP2B:0.98619063851;POU2F1..3:0.983697366037;TLX2:0.973587869356;MED-1{core}:0.911856078791;GTF2A1,2:0.893728844104;GFI1B:0.85712912328;LMO2:0.845596026563;HMX1:0.835000808895;MZF1:0.82998727814;EBF1:0.806997071652;POU6F1:0.772968400548;HOX{A6,A7,B6,B7}:0.758587915262;PAX5:0.758578587199;DBP:0.725684069938;PRDM1:0.706687533283;TFAP4:0.695258416688;TBX4,5:0.675560060641;NHLH1,2:0.666043644703;IRF7:0.659070634534;ESR1:0.640219763641;NR5A1,2:0.638638725258;NR6A1:0.633527770308;EGR1..3:0.617523147014;RREB1:0.604526469223;bHLH_family:0.593236322817;FOXM1:0.588268563793;IRF1,2:0.578185968713;STAT1,3:0.556149601838;ZNF423:0.554779392964;ALX1:0.488450331837;REST:0.464529827606;FOXD3:0.463221346188;SOX5:0.46245053305;STAT2,4,6:0.439999037102;RXR{A,B,G}:0.431843277602;NKX2-3_NKX2-5:0.430394719223;ETS1,2:0.424845265589;DMAP1_NCOR{1,2}_SMARC:0.393560325944;SREBF1,2:0.393165776306;MEF2{A,B,C,D}:0.323036991108;IKZF1:0.316721197363;TGIF1:0.314847280025;SMAD1..7,9:0.284128735711;NFIX:0.267849210024;BREu{core}:0.233199754094;ZFP161:0.227829977061;FOXP1:0.22319872264;RFX2..5_RFXANK_RFXAP:0.216411599786;PITX1..3:0.193031946048;TEAD1:0.189057226574;SPIB:0.165860713043;FOXN1:0.125214190578;ATF2:0.0681447351113;HBP1_HMGB_SSRP1_UBTF:0.0563305906391;IKZF2:0.0228599917821;CRX:0.0183774765253;LEF1_TCF7_TCF7L1,2:0.0116771427551;ZNF143:0.00247455012437;GCM1,2:-0.00378446885997;VSX1,2:-0.00927820635734;MAFB:-0.0127204802296;HMGA1,2:-0.0596024213389;PRRX1,2:-0.0753007321022;SPI1:-0.0851728669809;NKX2-2,8:-0.0960831264369;XBP1:-0.100561831079;GZF1:-0.101902557521;NFY{A,B,C}:-0.103288109981;NFIL3:-0.123895548757;RUNX1..3:-0.126740879356;ZBTB6:-0.139519131812;ONECUT1,2:-0.142376795524;SOX2:-0.150768613442;ZNF238:-0.163910957014;ATF4:-0.174782710186;JUN:-0.184505188221;ELF1,2,4:-0.232307319378;PBX1:-0.234291988202;HAND1,2:-0.246249849389;GFI1:-0.255388980714;GATA4:-0.262434773107;CDC5L:-0.264477888196;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.265106944735;NKX3-2:-0.297750512696;TFDP1:-0.30079372902;GLI1..3:-0.321634811244;TP53:-0.35166107891;NFE2:-0.354158984624;KLF4:-0.36801271652;NKX2-1,4:-0.368218161364;NKX6-1,2:-0.375933852955;FOXQ1:-0.389615856036;HLF:-0.39530705483;TOPORS:-0.402047579834;PDX1:-0.405064371158;FOSL2:-0.428599835846;NFKB1_REL_RELA:-0.435210619116;SOX{8,9,10}:-0.435871739807;ATF5_CREB3:-0.448928211315;RORA:-0.458583312113;LHX3,4:-0.462511679157;HES1:-0.481153904365;PAX1,9:-0.495838174779;SOX17:-0.501841273956;PAX3,7:-0.503980350509;RXRA_VDR{dimer}:-0.565682458283;BPTF:-0.577564976073;AHR_ARNT_ARNT2:-0.585463285768;E2F1..5:-0.592350310861;FOS_FOS{B,L1}_JUN{B,D}:-0.594128307752;CUX2:-0.596659748657;CEBPA,B_DDIT3:-0.597504856766;NRF1:-0.605639877723;PAX2:-0.638794681525;CDX1,2,4:-0.658249985622;BACH2:-0.659069658586;TEF:-0.758658688536;ZIC1..3:-0.762408056847;POU1F1:-0.796077459574;UFEwm:-0.823513542364;ZNF384:-0.838670906621;OCT4_SOX2{dimer}:-0.854347910888;ARID5B:-0.901161597379;CREB1:-0.909129114257;RFX1:-0.944208063095;ALX4:-0.946306981477;EVI1:-0.960999450163;NFE2L2:-0.965390661737;FOXP3:-0.966721421673;ELK1,4_GABP{A,B1}:-0.969436746812;HOX{A5,B5}:-0.994909203445;PPARG:-1.02800001516;HIF1A:-1.03588163929;AIRE:-1.04156359446;YY1:-1.10380680944;POU3F1..4:-1.13571738598;HSF1,2:-1.16693004659;EN1,2:-1.17126061638;TAL1_TCF{3,4,12}:-1.23295178997;NANOG{mouse}:-1.24130219517;NFE2L1:-1.36802832902;MYB:-1.37234256327;ZBTB16:-1.64308490792;HOX{A4,D4}:-1.72809584046;HOXA9_MEIS1:-1.83803648027;STAT5{A,B}:-1.93591357471;NKX3-1:-1.98602828311;PAX8:-2.09758347476;PAX4:-2.31118595141 | |top_motifs=HNF4A_NR2F1,2:6.17982717821;HNF1A:4.1852458009;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.97743531193;GATA6:2.51497333229;NR1H4:2.2229534358;SP1:2.18869153487;AR:2.01657536191;SNAI1..3:2.01585090536;T:1.95110676896;ZEB1:1.88711902113;MTF1:1.8763845941;ESRRA:1.80579235391;TBP:1.78992475971;SRF:1.72541256102;FOX{D1,D2}:1.71032168487;FOX{F1,F2,J1}:1.66207819773;TFCP2:1.64285819161;MAZ:1.62463376666;RBPJ:1.59934929512;TFAP2{A,C}:1.52513301289;XCPE1{core}:1.52460054935;SPZ1:1.51533851241;FOXA2:1.44203958121;FOXL1:1.43058622419;ZNF148:1.323126132;NANOG:1.29955082283;MYBL2:1.25673112396;FOXO1,3,4:1.25354444089;TLX1..3_NFIC{dimer}:1.23450016649;MYFfamily:1.22187521752;ATF6:1.21176817819;PAX6:1.20889638508;PATZ1:1.20169125418;POU5F1:1.15756647484;EP300:1.15553788715;NR3C1:1.13263777733;MYOD1:1.12941365457;FOX{I1,J2}:1.10348555054;MTE{core}:1.05577815381;GTF2I:1.04681401936;ADNP_IRX_SIX_ZHX:1.04596752184;HIC1:1.02913352185;NFATC1..3:1.02037708555;TFAP2B:0.98619063851;POU2F1..3:0.983697366037;TLX2:0.973587869356;MED-1{core}:0.911856078791;GTF2A1,2:0.893728844104;GFI1B:0.85712912328;LMO2:0.845596026563;HMX1:0.835000808895;MZF1:0.82998727814;EBF1:0.806997071652;POU6F1:0.772968400548;HOX{A6,A7,B6,B7}:0.758587915262;PAX5:0.758578587199;DBP:0.725684069938;PRDM1:0.706687533283;TFAP4:0.695258416688;TBX4,5:0.675560060641;NHLH1,2:0.666043644703;IRF7:0.659070634534;ESR1:0.640219763641;NR5A1,2:0.638638725258;NR6A1:0.633527770308;EGR1..3:0.617523147014;RREB1:0.604526469223;bHLH_family:0.593236322817;FOXM1:0.588268563793;IRF1,2:0.578185968713;STAT1,3:0.556149601838;ZNF423:0.554779392964;ALX1:0.488450331837;REST:0.464529827606;FOXD3:0.463221346188;SOX5:0.46245053305;STAT2,4,6:0.439999037102;RXR{A,B,G}:0.431843277602;NKX2-3_NKX2-5:0.430394719223;ETS1,2:0.424845265589;DMAP1_NCOR{1,2}_SMARC:0.393560325944;SREBF1,2:0.393165776306;MEF2{A,B,C,D}:0.323036991108;IKZF1:0.316721197363;TGIF1:0.314847280025;SMAD1..7,9:0.284128735711;NFIX:0.267849210024;BREu{core}:0.233199754094;ZFP161:0.227829977061;FOXP1:0.22319872264;RFX2..5_RFXANK_RFXAP:0.216411599786;PITX1..3:0.193031946048;TEAD1:0.189057226574;SPIB:0.165860713043;FOXN1:0.125214190578;ATF2:0.0681447351113;HBP1_HMGB_SSRP1_UBTF:0.0563305906391;IKZF2:0.0228599917821;CRX:0.0183774765253;LEF1_TCF7_TCF7L1,2:0.0116771427551;ZNF143:0.00247455012437;GCM1,2:-0.00378446885997;VSX1,2:-0.00927820635734;MAFB:-0.0127204802296;HMGA1,2:-0.0596024213389;PRRX1,2:-0.0753007321022;SPI1:-0.0851728669809;NKX2-2,8:-0.0960831264369;XBP1:-0.100561831079;GZF1:-0.101902557521;NFY{A,B,C}:-0.103288109981;NFIL3:-0.123895548757;RUNX1..3:-0.126740879356;ZBTB6:-0.139519131812;ONECUT1,2:-0.142376795524;SOX2:-0.150768613442;ZNF238:-0.163910957014;ATF4:-0.174782710186;JUN:-0.184505188221;ELF1,2,4:-0.232307319378;PBX1:-0.234291988202;HAND1,2:-0.246249849389;GFI1:-0.255388980714;GATA4:-0.262434773107;CDC5L:-0.264477888196;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.265106944735;NKX3-2:-0.297750512696;TFDP1:-0.30079372902;GLI1..3:-0.321634811244;TP53:-0.35166107891;NFE2:-0.354158984624;KLF4:-0.36801271652;NKX2-1,4:-0.368218161364;NKX6-1,2:-0.375933852955;FOXQ1:-0.389615856036;HLF:-0.39530705483;TOPORS:-0.402047579834;PDX1:-0.405064371158;FOSL2:-0.428599835846;NFKB1_REL_RELA:-0.435210619116;SOX{8,9,10}:-0.435871739807;ATF5_CREB3:-0.448928211315;RORA:-0.458583312113;LHX3,4:-0.462511679157;HES1:-0.481153904365;PAX1,9:-0.495838174779;SOX17:-0.501841273956;PAX3,7:-0.503980350509;RXRA_VDR{dimer}:-0.565682458283;BPTF:-0.577564976073;AHR_ARNT_ARNT2:-0.585463285768;E2F1..5:-0.592350310861;FOS_FOS{B,L1}_JUN{B,D}:-0.594128307752;CUX2:-0.596659748657;CEBPA,B_DDIT3:-0.597504856766;NRF1:-0.605639877723;PAX2:-0.638794681525;CDX1,2,4:-0.658249985622;BACH2:-0.659069658586;TEF:-0.758658688536;ZIC1..3:-0.762408056847;POU1F1:-0.796077459574;UFEwm:-0.823513542364;ZNF384:-0.838670906621;OCT4_SOX2{dimer}:-0.854347910888;ARID5B:-0.901161597379;CREB1:-0.909129114257;RFX1:-0.944208063095;ALX4:-0.946306981477;EVI1:-0.960999450163;NFE2L2:-0.965390661737;FOXP3:-0.966721421673;ELK1,4_GABP{A,B1}:-0.969436746812;HOX{A5,B5}:-0.994909203445;PPARG:-1.02800001516;HIF1A:-1.03588163929;AIRE:-1.04156359446;YY1:-1.10380680944;POU3F1..4:-1.13571738598;HSF1,2:-1.16693004659;EN1,2:-1.17126061638;TAL1_TCF{3,4,12}:-1.23295178997;NANOG{mouse}:-1.24130219517;NFE2L1:-1.36802832902;MYB:-1.37234256327;ZBTB16:-1.64308490792;HOX{A4,D4}:-1.72809584046;HOXA9_MEIS1:-1.83803648027;STAT5{A,B}:-1.93591357471;NKX3-1:-1.98602828311;PAX8:-2.09758347476;PAX4:-2.31118595141 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10014-101C5;search_select_hide=table117:FF:10014-101C5 | |||
}} | }} |
Latest revision as of 12:14, 3 June 2020
Name: | colon, adult, pool1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs10619 |
Sample type: | tissues |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10619
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10619
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.122 |
10 | 10 | 0.0431 |
100 | 100 | 0.226 |
101 | 101 | 0.696 |
102 | 102 | 0.162 |
103 | 103 | 0.266 |
104 | 104 | 0.938 |
105 | 105 | 0.369 |
106 | 106 | 0.642 |
107 | 107 | 0.219 |
108 | 108 | 0.746 |
109 | 109 | 0.461 |
11 | 11 | 0.301 |
110 | 110 | 0.124 |
111 | 111 | 0.0758 |
112 | 112 | 0.532 |
113 | 113 | 0.864 |
114 | 114 | 0.0645 |
115 | 115 | 0.983 |
116 | 116 | 0.582 |
117 | 117 | 0.0292 |
118 | 118 | 0.296 |
119 | 119 | 0.705 |
12 | 12 | 0.843 |
120 | 120 | 0.092 |
121 | 121 | 0.767 |
122 | 122 | 0.824 |
123 | 123 | 0.167 |
124 | 124 | 0.635 |
125 | 125 | 0.0309 |
126 | 126 | 0.14 |
127 | 127 | 0.316 |
128 | 128 | 0.195 |
129 | 129 | 0.215 |
13 | 13 | 0.256 |
130 | 130 | 0.605 |
131 | 131 | 0.408 |
132 | 132 | 0.0867 |
133 | 133 | 0.00536 |
134 | 134 | 0.0172 |
135 | 135 | 0.174 |
136 | 136 | 0.866 |
137 | 137 | 0.341 |
138 | 138 | 0.503 |
139 | 139 | 0.0724 |
14 | 14 | 0.738 |
140 | 140 | 0.261 |
141 | 141 | 0.318 |
142 | 142 | 0.764 |
143 | 143 | 0.0247 |
144 | 144 | 0.701 |
145 | 145 | 0.415 |
146 | 146 | 0.262 |
147 | 147 | 0.65 |
148 | 148 | 0.969 |
149 | 149 | 0.134 |
15 | 15 | 0.0557 |
150 | 150 | 0.61 |
151 | 151 | 0.867 |
152 | 152 | 0.0843 |
153 | 153 | 0.993 |
154 | 154 | 0.538 |
155 | 155 | 0.822 |
156 | 156 | 0.904 |
157 | 157 | 0.413 |
158 | 158 | 0.248 |
159 | 159 | 0.716 |
16 | 16 | 0.342 |
160 | 160 | 0.655 |
161 | 161 | 0.458 |
162 | 162 | 0.481 |
163 | 163 | 0.811 |
164 | 164 | 0.0502 |
165 | 165 | 0.652 |
166 | 166 | 0.239 |
167 | 167 | 0.0894 |
168 | 168 | 0.0323 |
169 | 169 | 0.669 |
17 | 17 | 0.808 |
18 | 18 | 0.00772 |
19 | 19 | 0.43 |
2 | 2 | 0.0349 |
20 | 20 | 0.0656 |
21 | 21 | 0.194 |
22 | 22 | 0.563 |
23 | 23 | 0.551 |
24 | 24 | 0.643 |
25 | 25 | 0.61 |
26 | 26 | 0.342 |
27 | 27 | 0.568 |
28 | 28 | 0.84 |
29 | 29 | 0.0155 |
3 | 3 | 0.329 |
30 | 30 | 0.0117 |
31 | 31 | 0.839 |
32 | 32 | 0.366 |
33 | 33 | 0.378 |
34 | 34 | 0.272 |
35 | 35 | 0.199 |
36 | 36 | 0.0229 |
37 | 37 | 0.375 |
38 | 38 | 0.735 |
39 | 39 | 0.172 |
4 | 4 | 0.305 |
40 | 40 | 0.409 |
41 | 41 | 0.0836 |
42 | 42 | 0.447 |
43 | 43 | 0.482 |
44 | 44 | 0.761 |
45 | 45 | 0.162 |
46 | 46 | 0.215 |
47 | 47 | 0.27 |
48 | 48 | 0.446 |
49 | 49 | 0.0792 |
5 | 5 | 0.809 |
50 | 50 | 0.221 |
51 | 51 | 0.983 |
52 | 52 | 0.0599 |
53 | 53 | 0.649 |
54 | 54 | 0.77 |
55 | 55 | 0.479 |
56 | 56 | 0.857 |
57 | 57 | 0.073 |
58 | 58 | 0.945 |
59 | 59 | 0.47 |
6 | 6 | 0.863 |
60 | 60 | 0.372 |
61 | 61 | 0.576 |
62 | 62 | 0.612 |
63 | 63 | 0.957 |
64 | 64 | 0.527 |
65 | 65 | 0.707 |
66 | 66 | 0.0625 |
67 | 67 | 0.109 |
68 | 68 | 0.878 |
69 | 69 | 0.684 |
7 | 7 | 0.879 |
70 | 70 | 0.0639 |
71 | 71 | 0.0748 |
72 | 72 | 0.968 |
73 | 73 | 0.79 |
74 | 74 | 0.503 |
75 | 75 | 0.0175 |
76 | 76 | 0.009 |
77 | 77 | 0.0864 |
78 | 78 | 0.969 |
79 | 79 | 0.139 |
8 | 8 | 0.552 |
80 | 80 | 0.0296 |
81 | 81 | 0.145 |
82 | 82 | 0.409 |
83 | 83 | 0.726 |
84 | 84 | 0.747 |
85 | 85 | 0.464 |
86 | 86 | 0.887 |
87 | 87 | 0.951 |
88 | 88 | 0.793 |
89 | 89 | 0.875 |
9 | 9 | 0.498 |
90 | 90 | 0.0287 |
91 | 91 | 0.681 |
92 | 92 | 0.792 |
93 | 93 | 0.0535 |
94 | 94 | 0.0186 |
95 | 95 | 0.254 |
96 | 96 | 0.681 |
97 | 97 | 0.899 |
98 | 98 | 0.235 |
99 | 99 | 0.127 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10619
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010014 human colon - adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001155 (colon)
0000160 (intestine)
0000479 (tissue)
0001007 (digestive system)
0000064 (organ part)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0000059 (large intestine)
0005409 (gastrointestinal system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010014 (human colon - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)