FF:10801-110I9: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005470 | |DRA_sample_Accession=CAGE@SAMD00005470 | ||
|accession_numbers=CAGE;DRX007853;DRR008725;DRZ000150;DRZ001535 | |accession_numbers=CAGE;DRX007853;DRR008725;DRZ000150;DRZ001535;DRZ011500;DRZ012885 | ||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase= | |data_phase=2 | ||
|datafreeze_phase= | |datafreeze_phase=2 | ||
|def= | |def= | ||
|expression_enrichment_score=chr3:128212033..128212051,-!p1@GATA2!2.78!595.11!GATA2;;chr2:219849012..219849065,-!p1@FEV!2.42!260.27!FEV;;chr8:116673894..116673913,-!p12@TRPS1!2.02!103.76!TRPS1;;chr12:54694758..54694805,-!p1@NFE2!1.90!94.19!NFE2;;chr6:135502501..135502546,+!p1@MYB!1.86!84.46!MYB;;chr2:219849175..219849187,-!p4@FEV!1.82!64.36!FEV;;chr21:39870339..39870443,-!p1@ERG!1.79!61.22!ERG;;chr9:135854091..135854159,+!p1@GFI1B!1.77!57.77!GFI1B;;chr2:68592406..68592424,+!p1@PLEK!1.72!51.02!PLEK;;chr12:54694807..54694832,-!p3@NFE2!1.67!46.00!NFE2;;chr19:13213511..13213545,-!p2@LYL1!1.62!43.80!LYL1;;chr6:135502408..135502459,+!p2@MYB!1.61!46.15!MYB;;chr8:60031619..60031676,-!p1@TOX!1.59!79.12!TOX;;chr11:47400078..47400106,-!p1@SPI1!1.56!35.48!SPI1;;chr11:113930425..113930471,+!p1@ZBTB16!1.55!48.51!ZBTB16;;chr7:50344289..50344323,+!p1@IKZF1!1.55!34.38!IKZF1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.52!32.02!ZBED1;;chr8:116681108..116681120,-!p9@TRPS1!1.51!39.09!TRPS1;;chr1:25291475..25291511,-!p2@RUNX3!1.49!29.83!RUNX3;;chr7:115670804..115670825,-!p1@TFEC!1.46!27.63!TFEC;;chr3:128206762..128206781,-!p2@GATA2!1.37!134.22!GATA2;;chr19:33793430..33793447,-!p1@CEBPA!1.35!88.38!CEBPA;;chr8:116680833..116680881,-!p7@TRPS1!1.32!30.30!TRPS1;;chr1:92951607..92951661,-!p1@GFI1!1.32!20.09!GFI1;;chr9:20382446..20382493,-!p4@MLLT3!1.31!19.47!MLLT3;;chr8:60031934..60031986,-!p6@TOX!1.30!19.15!TOX;;chr5:88178983..88179012,-!p1@MEF2C!1.28!135.16!MEF2C;;chr20:62680984..62680999,-!p1@SOX18!1.27!23.39!SOX18;;chr8:116681123..116681143,-!p4@TRPS1!1.26!32.97!TRPS1;;chr11:47399947..47399961,-!p3@SPI1!1.24!16.33!SPI1;;chr13:72441315..72441454,-!p1@DACH1!1.23!32.02!DACH1;;chr6:135502472..135502489,+!p3@MYB!1.20!14.91!MYB;;chr3:18486354..18486377,-!p2@SATB1!1.18!17.58!SATB1;;chr11:47399996..47400014,-!p4@SPI1!1.18!14.13!SPI1;;chr8:60031682..60031710,-!p2@TOX!1.17!22.45!TOX;;chr8:128747846..128747860,+!p15@MYC!1.17!13.81!MYC;;chr7:50343634..50343717,+!p2@IKZF1!1.16!13.50!IKZF1;;chr8:116681409..116681431,-!p2@TRPS1!1.15!35.79!TRPS1;;chr2:219849078..219849085,-!p10@FEV!1.15!13.19!FEV;;chr14:75988771..75988826,+!p1@BATF!1.14!17.11!BATF;;chr1:47697539..47697573,-!p3@TAL1!1.14!12.72!TAL1;;chr18:77155922..77155939,+!p1@NFATC1!1.09!30.93!NFATC1;;chr8:60031762..60031803,-!p3@TOX!1.09!16.33!TOX;;chr2:60780607..60780624,-!p2@BCL11A!1.08!34.22!BCL11A;;chr8:60031809..60031835,-!p4@TOX!1.08!13.97!TOX;;chr21:36421535..36421610,-!p2@RUNX1!1.07!39.09!RUNX1;;chr4:109090075..109090095,-!p2@LEF1!1.07!10.83!LEF1;;chr8:60031840..60031869,-!p5@TOX!1.07!10.83!TOX;;chr6:100061724..100061753,+!p1@PRDM13!1.06!10.52!PRDM13;;chr10:131762504..131762555,-!p1@EBF3!1.06!10.36!EBF3;;chr7:44143925..44143970,+!p1@AEBP1!1.05!227.46!AEBP1;;chr10:94449703..94449718,+!p1@HHEX!1.05!39.56!HHEX;;chr7:44143978..44143989,+!p2@AEBP1!1.05!18.68!AEBP1;;chr19:13213662..13213686,-!p1@LYL1!1.05!15.38!LYL1;;chr7:137620650..137620677,-!p3@CREB3L2!1.04!9.89!CREB3L2;;chr7:50344251..50344288,+!p3@IKZF1!1.04!9.89!IKZF1;;chr8:145669791..145669834,-!p1@TONSL!1.02!27.63!TONSL;;chr11:47400032..47400043,-!p5@SPI1!1.01!9.26!SPI1;;chr12:11802547..11802560,+!p5@ETV6!1.00!12.56!ETV6;;chrX:48644984..48645005,+!p1@GATA1!1.00!9.10!GATA1;;chr1:47695003..47695042,-!p2@TAL1!0.98!8.48!TAL1;;chr2:145277640..145277771,-!p1@ZEB2!0.97!115.54!ZEB2;;chr12:54694738..54694749,-!p5@NFE2!0.97!8.32!NFE2;;chr20:31350184..31350200,+!p1@DNMT3B!0.96!17.11!DNMT3B;;chr11:113930291..113930339,+!p2@ZBTB16!0.96!13.66!ZBTB16;;chr2:219849897..219849928,-!p2@FEV!0.95!7.85!FEV;;chr13:41593425..41593480,-!p1@ELF1!0.94!50.39!ELF1;;chr7:44143997..44144008,+!p3@AEBP1!0.94!9.89!AEBP1;;chr14:23588242..23588262,-!p1@CEBPE!0.94!7.69!CEBPE;;chr11:128563948..128564003,+!p1@FLI1!0.91!89.32!FLI1;;chr9:2015335..2015370,+!p1@SMARCA2!0.90!89.32!SMARCA2;;chr11:47400045..47400060,-!p6@SPI1!0.90!6.91!SPI1;;chr12:54694653..54694672,-!p2@NFE2!0.90!6.91!NFE2;;chr19:13213555..13213568,-!p5@LYL1!0.90!6.91!LYL1;;chr11:113930401..113930422,+!p3@ZBTB16!0.89!6.75!ZBTB16;;chr1:25256756..25256774,-!p1@RUNX3!0.88!12.87!RUNX3;;chr17:79881332..79881348,-!p3@MAFG!0.87!9.58!MAFG;;chr1:221052994..221053008,+!p6@HLX!0.87!7.69!HLX;;chr11:47400062..47400077,-!p2@SPI1!0.87!6.44!SPI1;;chr10:94449675..94449694,+!p2@HHEX!0.86!17.42!HHEX;;chr2:102091566..102091581,-!p1@RFX8!0.86!6.28!RFX8;;chr8:116680215..116680245,-!p6@TRPS1!0.85!9.89!TRPS1;;chr8:128748308..128748324,+!p2@MYC!0.84!177.07!MYC;;chr11:32457075..32457095,-!p1@WT1!0.84!5.97!WT1;;chr8:22550982..22550999,-!p1@EGR3!0.83!17.27!EGR3;;chr11:61520075..61520136,+!p1@C11orf9!0.83!12.72!C11orf9;;chr19:13213465..13213478,-!p7@LYL1!0.83!5.81!LYL1;;chr6:20402102..20402152,+!p1@E2F3!0.82!24.33!E2F3;;chr7:128577972..128578047,+!p1@IRF5!0.82!9.10!IRF5;;chr1:158985493..158985535,+!p4@IFI16!0.82!8.79!IFI16;;chr7:137620684..137620711,-!p4@CREB3L2!0.82!5.65!CREB3L2;;chr20:42295745..42295765,+!p1@MYBL2!0.81!95.44!MYBL2;;chr16:68119324..68119364,+!p1@NFATC3!0.81!26.37!NFATC3;;chr16:29819446..29819471,+!p9@MAZ!0.81!17.27!MAZ;;chr2:219849213..219849224,-!p6@FEV!0.81!5.49!FEV;;chr10:31288398..31288455,-!p2@ZNF438!0.80!6.28!ZNF438;;chr2:219849008..219849011,-!p13@FEV!0.80!5.34!FEV;;chr2:68592394..68592405,+!p2@PLEK!0.80!5.34!PLEK;;chr1:47691303..47691319,-!p5@TAL1!0.80!5.34!TAL1;;chr19:22817119..22817145,+!p1@ZNF492!0.79!9.10!ZNF492;;chr1:205649614..205649663,-!p1@SLC45A3,p5@ELK4!0.79!8.95!ELK4;;chr17:42295682..42295731,-!p17@UBTF!0.79!5.18!UBTF;;chr9:124976328..124976372,-!p2@LHX6!0.79!5.18!LHX6;;chr19:45579725..45579743,-!p1@ZNF296!0.78!24.49!ZNF296;;chr4:109089901..109089930,-!p3@LEF1!0.78!5.02!LEF1;;chr20:50159198..50159299,-!p1@NFATC2!0.77!7.38!NFATC2;;chr6:15401104..15401166,+!p5@JARID2!0.77!4.87!JARID2;;chr7:50348268..50348366,+!p4@IKZF1!0.77!4.87!IKZF1;;chr2:219849805..219849819,-!p3@FEV!0.77!4.87!FEV;;chr6:144329500..144329526,-!p4@PLAGL1!0.76!11.93!PLAGL1;;chr2:185463247..185463263,+!p1@ZNF804A!0.76!8.95!ZNF804A;;chr17:42295777..42295816,-!p7@UBTF!0.76!5.81!UBTF;;chr1:47696918..47696935,-!p6@TAL1!0.76!4.71!TAL1;;chr6:144385698..144385742,-!p2@PLAGL1!0.75!5.81!PLAGL1;;chr11:47279504..47279563,+!p1@NR1H3!0.74!10.99!NR1H3;;chr11:32457103..32457123,-!p3@WT1!0.74!4.55!WT1;;chr19:13213399..13213414,-!p6@LYL1!0.74!4.55!LYL1;;chr4:113437332..113437337,-!p1@NEUROG2!0.74!4.55!NEUROG2;;chr1:158979686..158979745,+!p1@IFI16!0.73!159.33!IFI16;;chr19:52074502..52074587,+!p1@ZNF175!0.73!17.27!ZNF175;;chr13:72441074..72441172,-!p2@DACH1!0.73!4.40!DACH1;;chr6:144329384..144329405,-!p1@PLAGL1!0.72!55.57!PLAGL1;;chr1:247171316..247171336,-!p3@ZNF695!0.72!6.59!ZNF695;;chr5:88179017..88179046,-!p2@MEF2C!0.71!18.37!MEF2C;;chr2:66662249..66662267,+!p2@MEIS1!0.71!17.74!MEIS1;;chr1:47697439..47697457,-!p9@TAL1!0.71!4.08!TAL1;;chr14:75988831..75988847,+!p2@BATF!0.71!4.08!BATF;;chr2:60780753..60780800,-!p1@BCL11A!0.70!22.45!BCL11A;;chr21:36260980..36261011,-!p1@RUNX1!0.69!130.14!RUNX1;;chr3:141747459..141747475,-!p1@TFDP2!0.69!36.73!TFDP2;;chr6:15246200..15246214,+!p2@JARID2!0.69!11.93!JARID2;;chr9:2015306..2015323,+!p3@SMARCA2!0.69!11.30!SMARCA2;;chr1:221052733..221052749,+!p2@HLX!0.69!5.34!HLX;;chr17:46622205..46622218,-!p3@HOXB2!0.69!4.55!HOXB2;;chr6:100061760..100061774,+!p2@PRDM13!0.69!3.92!PRDM13;;chr6:21593973..21593988,+!p1@SOX4!0.68!157.77!SOX4;;chr20:42295713..42295738,+!p2@MYBL2!0.68!25.59!MYBL2;;chr2:66662281..66662308,+!p1@MEIS1!0.68!14.60!MEIS1;;chr19:45579762..45579772,-!p2@ZNF296!0.68!4.24!ZNF296;;chr11:113930477..113930488,+!p4@ZBTB16!0.68!3.77!ZBTB16;;chr12:54778471..54778528,-!p1@ZNF385A!0.68!3.77!ZNF385A;;chr19:23299814..23299844,+!p1@ZNF730!0.67!4.71!ZNF730;;chr8:116681686..116681699,-!p23@TRPS1!0.66!3.61!TRPS1;;chr3:128207349..128207386,-!p3@GATA2!0.66!3.61!GATA2;;chr8:128747661..128747703,+!p6@MYC!0.65!4.87!MYC;;chr6:135513595..135513617,+!p4@MYB!0.65!3.45!MYB;;chr4:109087445..109087463,-!p1@LEF1!0.65!3.45!LEF1;;chr17:40440481..40440550,+!p1@STAT5A!0.64!28.57!STAT5A;;chr19:21265028..21265052,+!p2@ZNF714!0.64!6.59!ZNF714;;chr1:221052776..221052799,+!p1@HLX!0.64!6.59!HLX;;chrX:66763856..66763896,+!p1@AR!0.64!5.18!AR;;chr22:29196547..29196563,-!p2@XBP1!0.63!144.74!XBP1;;chr15:57210961..57211012,+!p3@TCF12!0.63!11.93!TCF12;;chr19:35455110..35455149,-!p1@ZNF792!0.63!7.06!ZNF792;;chr17:46622229..46622257,-!p6@HOXB2!0.63!3.92!HOXB2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.63!3.30!PEG3;;chr8:60031563..60031574,-!p7@TOX!0.63!3.30!TOX;;chr19:45971246..45971265,+!p1@FOSB!0.62!71.43!FOSB;;chr8:128747757..128747800,+!p7@MYC!0.62!4.55!MYC;;chr2:185463521..185463557,+!p3@ZNF804A!0.62!3.14!ZNF804A;;chr4:109089436..109089456,-!p22@LEF1!0.62!3.14!LEF1;;chr9:135854168..135854179,+!p5@GFI1B!0.62!3.14!GFI1B;;chr17:48072574..48072597,-!p1@DLX3!0.62!3.14!DLX3;;chr1:156470515..156470542,-!p2@MEF2D!0.61!18.99!MEF2D;;chr17:41277372..41277418,-!p1@BRCA1!0.61!13.03!BRCA1;;chr5:138647473..138647476,+!p6@MATR3!0.61!8.79!MATR3;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.61!7.54!SOHLH2;;chr1:247171347..247171366,-!p2@ZNF695!0.61!6.28!ZNF695;;chr8:116681247..116681261,-!p8@TRPS1!0.60!4.08!TRPS1;;chr6:28304275..28304282,-!p7@ZNF323!0.60!2.98!ZNF323;;chr21:36421147..36421193,-!p10@RUNX1!0.60!2.98!RUNX1;;chr3:63953435..63953499,+!p1@ATXN7!0.60!2.98!ATXN7;;chr4:109088940..109089037,-!p4@LEF1!0.60!2.98!LEF1;;chr9:117150254..117150271,-!p1@AKNA!0.59!9.10!AKNA;;chr10:35484053..35484076,+!p1@CREM!0.59!8.32!CREM;;chr6:144329531..144329546,-!p5@PLAGL1!0.59!5.02!PLAGL1;;chr5:138609782..138609826,+!p5@MATR3!0.58!22.29!MATR3;;chr8:116681150..116681164,-!p5@TRPS1!0.58!6.12!TRPS1;;chr2:60778035..60778060,-!p4@BCL11A!0.58!3.45!BCL11A;;chr7:44143738..44143760,+!p4@AEBP1!0.58!3.30!AEBP1;;chr7:115670792..115670797,-!p2@TFEC!0.58!2.83!TFEC;;chr8:116681878..116681893,-!p15@TRPS1!0.58!2.83!TRPS1;;chr2:60781201..60781258,-!p3@BCL11A!0.58!2.83!BCL11A;;chr4:57522598..57522664,-!p3@HOPX!0.58!2.83!HOPX;;chr4:57522674..57522699,-!p5@HOPX!0.58!2.83!HOPX;;chr1:158985457..158985468,+!p12@IFI16!0.58!2.83!IFI16;;chr21:36421347..36421380,-!p8@RUNX1!0.58!2.83!RUNX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| |expression_enrichment_score=chr3:128212033..128212051,-!p1@GATA2!2.78!595.11!GATA2;;chr2:219849012..219849065,-!p1@FEV!2.42!260.27!FEV;;chr8:116673894..116673913,-!p12@TRPS1!2.02!103.76!TRPS1;;chr12:54694758..54694805,-!p1@NFE2!1.90!94.19!NFE2;;chr6:135502501..135502546,+!p1@MYB!1.86!84.46!MYB;;chr2:219849175..219849187,-!p4@FEV!1.82!64.36!FEV;;chr21:39870339..39870443,-!p1@ERG!1.79!61.22!ERG;;chr9:135854091..135854159,+!p1@GFI1B!1.77!57.77!GFI1B;;chr2:68592406..68592424,+!p1@PLEK!1.72!51.02!PLEK;;chr12:54694807..54694832,-!p3@NFE2!1.67!46.00!NFE2;;chr19:13213511..13213545,-!p2@LYL1!1.62!43.80!LYL1;;chr6:135502408..135502459,+!p2@MYB!1.61!46.15!MYB;;chr8:60031619..60031676,-!p1@TOX!1.59!79.12!TOX;;chr11:47400078..47400106,-!p1@SPI1!1.56!35.48!SPI1;;chr11:113930425..113930471,+!p1@ZBTB16!1.55!48.51!ZBTB16;;chr7:50344289..50344323,+!p1@IKZF1!1.55!34.38!IKZF1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.52!32.02!ZBED1;;chr8:116681108..116681120,-!p9@TRPS1!1.51!39.09!TRPS1;;chr1:25291475..25291511,-!p2@RUNX3!1.49!29.83!RUNX3;;chr7:115670804..115670825,-!p1@TFEC!1.46!27.63!TFEC;;chr3:128206762..128206781,-!p2@GATA2!1.37!134.22!GATA2;;chr19:33793430..33793447,-!p1@CEBPA!1.35!88.38!CEBPA;;chr8:116680833..116680881,-!p7@TRPS1!1.32!30.30!TRPS1;;chr1:92951607..92951661,-!p1@GFI1!1.32!20.09!GFI1;;chr9:20382446..20382493,-!p4@MLLT3!1.31!19.47!MLLT3;;chr8:60031934..60031986,-!p6@TOX!1.30!19.15!TOX;;chr5:88178983..88179012,-!p1@MEF2C!1.28!135.16!MEF2C;;chr20:62680984..62680999,-!p1@SOX18!1.27!23.39!SOX18;;chr8:116681123..116681143,-!p4@TRPS1!1.26!32.97!TRPS1;;chr11:47399947..47399961,-!p3@SPI1!1.24!16.33!SPI1;;chr13:72441315..72441454,-!p1@DACH1!1.23!32.02!DACH1;;chr6:135502472..135502489,+!p3@MYB!1.20!14.91!MYB;;chr3:18486354..18486377,-!p2@SATB1!1.18!17.58!SATB1;;chr11:47399996..47400014,-!p4@SPI1!1.18!14.13!SPI1;;chr8:60031682..60031710,-!p2@TOX!1.17!22.45!TOX;;chr8:128747846..128747860,+!p15@MYC!1.17!13.81!MYC;;chr7:50343634..50343717,+!p2@IKZF1!1.16!13.50!IKZF1;;chr8:116681409..116681431,-!p2@TRPS1!1.15!35.79!TRPS1;;chr2:219849078..219849085,-!p10@FEV!1.15!13.19!FEV;;chr14:75988771..75988826,+!p1@BATF!1.14!17.11!BATF;;chr1:47697539..47697573,-!p3@TAL1!1.14!12.72!TAL1;;chr18:77155922..77155939,+!p1@NFATC1!1.09!30.93!NFATC1;;chr8:60031762..60031803,-!p3@TOX!1.09!16.33!TOX;;chr2:60780607..60780624,-!p2@BCL11A!1.08!34.22!BCL11A;;chr8:60031809..60031835,-!p4@TOX!1.08!13.97!TOX;;chr21:36421535..36421610,-!p2@RUNX1!1.07!39.09!RUNX1;;chr4:109090075..109090095,-!p2@LEF1!1.07!10.83!LEF1;;chr8:60031840..60031869,-!p5@TOX!1.07!10.83!TOX;;chr6:100061724..100061753,+!p1@PRDM13!1.06!10.52!PRDM13;;chr10:131762504..131762555,-!p1@EBF3!1.06!10.36!EBF3;;chr7:44143925..44143970,+!p1@AEBP1!1.05!227.46!AEBP1;;chr10:94449703..94449718,+!p1@HHEX!1.05!39.56!HHEX;;chr7:44143978..44143989,+!p2@AEBP1!1.05!18.68!AEBP1;;chr19:13213662..13213686,-!p1@LYL1!1.05!15.38!LYL1;;chr7:137620650..137620677,-!p3@CREB3L2!1.04!9.89!CREB3L2;;chr7:50344251..50344288,+!p3@IKZF1!1.04!9.89!IKZF1;;chr8:145669791..145669834,-!p1@TONSL!1.02!27.63!TONSL;;chr11:47400032..47400043,-!p5@SPI1!1.01!9.26!SPI1;;chr12:11802547..11802560,+!p5@ETV6!1.00!12.56!ETV6;;chrX:48644984..48645005,+!p1@GATA1!1.00!9.10!GATA1;;chr1:47695003..47695042,-!p2@TAL1!0.98!8.48!TAL1;;chr2:145277640..145277771,-!p1@ZEB2!0.97!115.54!ZEB2;;chr12:54694738..54694749,-!p5@NFE2!0.97!8.32!NFE2;;chr20:31350184..31350200,+!p1@DNMT3B!0.96!17.11!DNMT3B;;chr11:113930291..113930339,+!p2@ZBTB16!0.96!13.66!ZBTB16;;chr2:219849897..219849928,-!p2@FEV!0.95!7.85!FEV;;chr13:41593425..41593480,-!p1@ELF1!0.94!50.39!ELF1;;chr7:44143997..44144008,+!p3@AEBP1!0.94!9.89!AEBP1;;chr14:23588242..23588262,-!p1@CEBPE!0.94!7.69!CEBPE;;chr11:128563948..128564003,+!p1@FLI1!0.91!89.32!FLI1;;chr9:2015335..2015370,+!p1@SMARCA2!0.90!89.32!SMARCA2;;chr11:47400045..47400060,-!p6@SPI1!0.90!6.91!SPI1;;chr12:54694653..54694672,-!p2@NFE2!0.90!6.91!NFE2;;chr19:13213555..13213568,-!p5@LYL1!0.90!6.91!LYL1;;chr11:113930401..113930422,+!p3@ZBTB16!0.89!6.75!ZBTB16;;chr1:25256756..25256774,-!p1@RUNX3!0.88!12.87!RUNX3;;chr17:79881332..79881348,-!p3@MAFG!0.87!9.58!MAFG;;chr1:221052994..221053008,+!p6@HLX!0.87!7.69!HLX;;chr11:47400062..47400077,-!p2@SPI1!0.87!6.44!SPI1;;chr10:94449675..94449694,+!p2@HHEX!0.86!17.42!HHEX;;chr2:102091566..102091581,-!p1@RFX8!0.86!6.28!RFX8;;chr8:116680215..116680245,-!p6@TRPS1!0.85!9.89!TRPS1;;chr8:128748308..128748324,+!p2@MYC!0.84!177.07!MYC;;chr11:32457075..32457095,-!p1@WT1!0.84!5.97!WT1;;chr8:22550982..22550999,-!p1@EGR3!0.83!17.27!EGR3;;chr11:61520075..61520136,+!p1@C11orf9!0.83!12.72!C11orf9;;chr19:13213465..13213478,-!p7@LYL1!0.83!5.81!LYL1;;chr6:20402102..20402152,+!p1@E2F3!0.82!24.33!E2F3;;chr7:128577972..128578047,+!p1@IRF5!0.82!9.10!IRF5;;chr1:158985493..158985535,+!p4@IFI16!0.82!8.79!IFI16;;chr7:137620684..137620711,-!p4@CREB3L2!0.82!5.65!CREB3L2;;chr20:42295745..42295765,+!p1@MYBL2!0.81!95.44!MYBL2;;chr16:68119324..68119364,+!p1@NFATC3!0.81!26.37!NFATC3;;chr16:29819446..29819471,+!p9@MAZ!0.81!17.27!MAZ;;chr2:219849213..219849224,-!p6@FEV!0.81!5.49!FEV;;chr10:31288398..31288455,-!p2@ZNF438!0.80!6.28!ZNF438;;chr2:219849008..219849011,-!p13@FEV!0.80!5.34!FEV;;chr2:68592394..68592405,+!p2@PLEK!0.80!5.34!PLEK;;chr1:47691303..47691319,-!p5@TAL1!0.80!5.34!TAL1;;chr19:22817119..22817145,+!p1@ZNF492!0.79!9.10!ZNF492;;chr1:205649614..205649663,-!p1@SLC45A3,p5@ELK4!0.79!8.95!ELK4;;chr17:42295682..42295731,-!p17@UBTF!0.79!5.18!UBTF;;chr9:124976328..124976372,-!p2@LHX6!0.79!5.18!LHX6;;chr19:45579725..45579743,-!p1@ZNF296!0.78!24.49!ZNF296;;chr4:109089901..109089930,-!p3@LEF1!0.78!5.02!LEF1;;chr20:50159198..50159299,-!p1@NFATC2!0.77!7.38!NFATC2;;chr6:15401104..15401166,+!p5@JARID2!0.77!4.87!JARID2;;chr7:50348268..50348366,+!p4@IKZF1!0.77!4.87!IKZF1;;chr2:219849805..219849819,-!p3@FEV!0.77!4.87!FEV;;chr6:144329500..144329526,-!p4@PLAGL1!0.76!11.93!PLAGL1;;chr2:185463247..185463263,+!p1@ZNF804A!0.76!8.95!ZNF804A;;chr17:42295777..42295816,-!p7@UBTF!0.76!5.81!UBTF;;chr1:47696918..47696935,-!p6@TAL1!0.76!4.71!TAL1;;chr6:144385698..144385742,-!p2@PLAGL1!0.75!5.81!PLAGL1;;chr11:47279504..47279563,+!p1@NR1H3!0.74!10.99!NR1H3;;chr11:32457103..32457123,-!p3@WT1!0.74!4.55!WT1;;chr19:13213399..13213414,-!p6@LYL1!0.74!4.55!LYL1;;chr4:113437332..113437337,-!p1@NEUROG2!0.74!4.55!NEUROG2;;chr1:158979686..158979745,+!p1@IFI16!0.73!159.33!IFI16;;chr19:52074502..52074587,+!p1@ZNF175!0.73!17.27!ZNF175;;chr13:72441074..72441172,-!p2@DACH1!0.73!4.40!DACH1;;chr6:144329384..144329405,-!p1@PLAGL1!0.72!55.57!PLAGL1;;chr1:247171316..247171336,-!p3@ZNF695!0.72!6.59!ZNF695;;chr5:88179017..88179046,-!p2@MEF2C!0.71!18.37!MEF2C;;chr2:66662249..66662267,+!p2@MEIS1!0.71!17.74!MEIS1;;chr1:47697439..47697457,-!p9@TAL1!0.71!4.08!TAL1;;chr14:75988831..75988847,+!p2@BATF!0.71!4.08!BATF;;chr2:60780753..60780800,-!p1@BCL11A!0.70!22.45!BCL11A;;chr21:36260980..36261011,-!p1@RUNX1!0.69!130.14!RUNX1;;chr3:141747459..141747475,-!p1@TFDP2!0.69!36.73!TFDP2;;chr6:15246200..15246214,+!p2@JARID2!0.69!11.93!JARID2;;chr9:2015306..2015323,+!p3@SMARCA2!0.69!11.30!SMARCA2;;chr1:221052733..221052749,+!p2@HLX!0.69!5.34!HLX;;chr17:46622205..46622218,-!p3@HOXB2!0.69!4.55!HOXB2;;chr6:100061760..100061774,+!p2@PRDM13!0.69!3.92!PRDM13;;chr6:21593973..21593988,+!p1@SOX4!0.68!157.77!SOX4;;chr20:42295713..42295738,+!p2@MYBL2!0.68!25.59!MYBL2;;chr2:66662281..66662308,+!p1@MEIS1!0.68!14.60!MEIS1;;chr19:45579762..45579772,-!p2@ZNF296!0.68!4.24!ZNF296;;chr11:113930477..113930488,+!p4@ZBTB16!0.68!3.77!ZBTB16;;chr12:54778471..54778528,-!p1@ZNF385A!0.68!3.77!ZNF385A;;chr19:23299814..23299844,+!p1@ZNF730!0.67!4.71!ZNF730;;chr8:116681686..116681699,-!p23@TRPS1!0.66!3.61!TRPS1;;chr3:128207349..128207386,-!p3@GATA2!0.66!3.61!GATA2;;chr8:128747661..128747703,+!p6@MYC!0.65!4.87!MYC;;chr6:135513595..135513617,+!p4@MYB!0.65!3.45!MYB;;chr4:109087445..109087463,-!p1@LEF1!0.65!3.45!LEF1;;chr17:40440481..40440550,+!p1@STAT5A!0.64!28.57!STAT5A;;chr19:21265028..21265052,+!p2@ZNF714!0.64!6.59!ZNF714;;chr1:221052776..221052799,+!p1@HLX!0.64!6.59!HLX;;chrX:66763856..66763896,+!p1@AR!0.64!5.18!AR;;chr22:29196547..29196563,-!p2@XBP1!0.63!144.74!XBP1;;chr15:57210961..57211012,+!p3@TCF12!0.63!11.93!TCF12;;chr19:35455110..35455149,-!p1@ZNF792!0.63!7.06!ZNF792;;chr17:46622229..46622257,-!p6@HOXB2!0.63!3.92!HOXB2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.63!3.30!PEG3;;chr8:60031563..60031574,-!p7@TOX!0.63!3.30!TOX;;chr19:45971246..45971265,+!p1@FOSB!0.62!71.43!FOSB;;chr8:128747757..128747800,+!p7@MYC!0.62!4.55!MYC;;chr2:185463521..185463557,+!p3@ZNF804A!0.62!3.14!ZNF804A;;chr4:109089436..109089456,-!p22@LEF1!0.62!3.14!LEF1;;chr9:135854168..135854179,+!p5@GFI1B!0.62!3.14!GFI1B;;chr17:48072574..48072597,-!p1@DLX3!0.62!3.14!DLX3;;chr1:156470515..156470542,-!p2@MEF2D!0.61!18.99!MEF2D;;chr17:41277372..41277418,-!p1@BRCA1!0.61!13.03!BRCA1;;chr5:138647473..138647476,+!p6@MATR3!0.61!8.79!MATR3;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.61!7.54!SOHLH2;;chr1:247171347..247171366,-!p2@ZNF695!0.61!6.28!ZNF695;;chr8:116681247..116681261,-!p8@TRPS1!0.60!4.08!TRPS1;;chr6:28304275..28304282,-!p7@ZNF323!0.60!2.98!ZNF323;;chr21:36421147..36421193,-!p10@RUNX1!0.60!2.98!RUNX1;;chr3:63953435..63953499,+!p1@ATXN7!0.60!2.98!ATXN7;;chr4:109088940..109089037,-!p4@LEF1!0.60!2.98!LEF1;;chr9:117150254..117150271,-!p1@AKNA!0.59!9.10!AKNA;;chr10:35484053..35484076,+!p1@CREM!0.59!8.32!CREM;;chr6:144329531..144329546,-!p5@PLAGL1!0.59!5.02!PLAGL1;;chr5:138609782..138609826,+!p5@MATR3!0.58!22.29!MATR3;;chr8:116681150..116681164,-!p5@TRPS1!0.58!6.12!TRPS1;;chr2:60778035..60778060,-!p4@BCL11A!0.58!3.45!BCL11A;;chr7:44143738..44143760,+!p4@AEBP1!0.58!3.30!AEBP1;;chr7:115670792..115670797,-!p2@TFEC!0.58!2.83!TFEC;;chr8:116681878..116681893,-!p15@TRPS1!0.58!2.83!TRPS1;;chr2:60781201..60781258,-!p3@BCL11A!0.58!2.83!BCL11A;;chr4:57522598..57522664,-!p3@HOPX!0.58!2.83!HOPX;;chr4:57522674..57522699,-!p5@HOPX!0.58!2.83!HOPX;;chr1:158985457..158985468,+!p12@IFI16!0.58!2.83!IFI16;;chr21:36421347..36421380,-!p8@RUNX1!0.58!2.83!RUNX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| ||
Line 41: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/chronic%2520myeloblastic%2520leukemia%2520%2528CML%2529%2520cell%2520line%253aKCL-22.CNhs11886.10801-110I9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/chronic%2520myeloblastic%2520leukemia%2520%2528CML%2529%2520cell%2520line%253aKCL-22.CNhs11886.10801-110I9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/chronic%2520myeloblastic%2520leukemia%2520%2528CML%2529%2520cell%2520line%253aKCL-22.CNhs11886.10801-110I9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/chronic%2520myeloblastic%2520leukemia%2520%2528CML%2529%2520cell%2520line%253aKCL-22.CNhs11886.10801-110I9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/chronic%2520myeloblastic%2520leukemia%2520%2528CML%2529%2520cell%2520line%253aKCL-22.CNhs11886.10801-110I9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10801-110I9 | |id=FF:10801-110I9 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0104137 | |is_a=EFO:0002091;;FF:0000210;;FF:0104137 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11886 | |library_id=CNhs11886 | ||
|library_id_phase_based= | |library_id_phase_based=2:CNhs11886 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10801 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10801 | |||
|name=chronic myeloblastic leukemia (CML) cell line:KCL-22 | |name=chronic myeloblastic leukemia (CML) cell line:KCL-22 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 51: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11886,LSID830,release010,COMPLETED | |profile_hcage=CNhs11886,LSID830,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| ||
Line 90: | Line 100: | ||
|top_motifs=RXR{A,B,G}_{NR1H2,PPAR}dimers:1.82251741506;ALX1:1.60046636006;MYB:1.51014496864;GATA6:1.43803514315;POU3F1..4:1.28503625799;RUNX1..3:1.213120772;E2F1..5:1.21270208545;ELF1,2,4:1.16621426064;FOX{I1,J2}:1.15370540865;ZBTB16:1.12347628545;NANOG{mouse}:0.9711915973;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.966690243268;NR5A1,2:0.89284687112;YY1:0.863561841387;PITX1..3:0.860690574659;DMAP1_NCOR{1,2}_SMARC:0.850816457601;POU2F1..3:0.816732653207;SPIB:0.77378353677;TEF:0.734746148279;AIRE:0.722730542083;HES1:0.721295822781;ZNF143:0.698637444873;ETS1,2:0.615351258622;HIF1A:0.592431969204;AR:0.570063825336;SPI1:0.563996537351;NFY{A,B,C}:0.543808010815;FOXP1:0.538830977117;NKX3-1:0.536056065364;IKZF2:0.530129460393;ELK1,4_GABP{A,B1}:0.522952470666;CUX2:0.453742475924;bHLH_family:0.43367396961;CREB1:0.400400532791;FOXD3:0.397752213684;BREu{core}:0.391219678878;NKX2-1,4:0.376380344731;CDX1,2,4:0.371909629664;TOPORS:0.334131636326;PRRX1,2:0.332742614445;POU1F1:0.330770842885;PAX6:0.323813378461;NRF1:0.32318119253;FOXQ1:0.277955507292;STAT1,3:0.277833929788;GCM1,2:0.26778530128;SOX17:0.257731071984;NKX2-3_NKX2-5:0.255499404095;PBX1:0.25201174212;PPARG:0.245287436818;FOXP3:0.228221739608;STAT5{A,B}:0.220984368216;GATA4:0.172592864189;PAX2:0.141444977409;PAX8:0.137724851541;DBP:0.12018232416;NKX2-2,8:0.0919340980318;NFIL3:0.0902555244316;FOXN1:0.0895532984825;ARID5B:0.0816344714589;HAND1,2:0.0603174581204;ONECUT1,2:0.0462368444714;HOXA9_MEIS1:0.0382713105365;MYOD1:0.0337364461919;SOX{8,9,10}:0.0101509197323;CRX:-0.00391005044479;HOX{A4,D4}:-0.022012680457;PAX3,7:-0.0427272595286;NFE2L1:-0.0598213806858;ATF5_CREB3:-0.0615839026237;RORA:-0.0803613540933;HBP1_HMGB_SSRP1_UBTF:-0.0908567417381;HNF1A:-0.0997422439477;PDX1:-0.101734363276;TFAP4:-0.103722224939;HNF4A_NR2F1,2:-0.106563930207;AHR_ARNT_ARNT2:-0.110251915713;NFATC1..3:-0.121807631722;EVI1:-0.131043571233;ZNF384:-0.138701070062;VSX1,2:-0.140139691502;RBPJ:-0.152868927786;RFX2..5_RFXANK_RFXAP:-0.157059223126;NFE2L2:-0.159671516247;EP300:-0.160159258928;NR6A1:-0.172371084788;POU6F1:-0.177303477776;ESRRA:-0.181618864913;RXR{A,B,G}:-0.182677756012;ZIC1..3:-0.187397279154;REST:-0.189613781293;ZNF423:-0.202408318313;PAX1,9:-0.20291396558;MEF2{A,B,C,D}:-0.204399140993;STAT2,4,6:-0.215907128487;XBP1:-0.221466436297;TFDP1:-0.226765638858;HIC1:-0.230755132874;EN1,2:-0.235537151711;OCT4_SOX2{dimer}:-0.239204558564;LHX3,4:-0.245197704973;FOXA2:-0.252041569267;NFE2:-0.261906367665;NKX6-1,2:-0.272474057484;NANOG:-0.278122872767;TLX2:-0.288280215231;LEF1_TCF7_TCF7L1,2:-0.306300598808;ZNF238:-0.307954507353;ZNF148:-0.324099356463;PRDM1:-0.334894264269;FOX{F1,F2,J1}:-0.342571104643;BACH2:-0.347379075933;CEBPA,B_DDIT3:-0.351479246087;NFKB1_REL_RELA:-0.35782869466;ZFP161:-0.386486896318;PAX5:-0.397311326406;MYBL2:-0.397645094876;FOS_FOS{B,L1}_JUN{B,D}:-0.413240179849;HOX{A5,B5}:-0.432326807757;SNAI1..3:-0.454131774082;RREB1:-0.454909435578;SRF:-0.48264364189;SOX2:-0.49245714354;IRF1,2:-0.515505873305;UFEwm:-0.516729819273;ESR1:-0.522356656917;ATF4:-0.530387331267;KLF4:-0.532666472161;ZEB1:-0.535864704517;PAX4:-0.554237778102;POU5F1:-0.564997746952;MTF1:-0.574423640037;HLF:-0.602330331494;TGIF1:-0.611049812653;FOSL2:-0.617941820386;TAL1_TCF{3,4,12}:-0.62457168657;NHLH1,2:-0.628158392045;RXRA_VDR{dimer}:-0.633356090203;EGR1..3:-0.636845038752;SOX5:-0.638218159445;MZF1:-0.645810159016;TBP:-0.655876705993;GTF2A1,2:-0.660220663225;EBF1:-0.664419812861;TFAP2B:-0.671757277043;FOXM1:-0.690317886884;MYFfamily:-0.692204577524;SMAD1..7,9:-0.701281053061;IKZF1:-0.702550177049;HOX{A6,A7,B6,B7}:-0.707840175875;ZBTB6:-0.716885654245;ALX4:-0.72618240043;GLI1..3:-0.729999151786;GTF2I:-0.734200933851;BPTF:-0.736894653883;RFX1:-0.753023977136;SREBF1,2:-0.767400270442;GFI1:-0.770944631481;ATF6:-0.79910706202;XCPE1{core}:-0.818890445892;FOXL1:-0.819384273494;HMGA1,2:-0.819854195907;CDC5L:-0.825588256869;IRF7:-0.842641904338;GZF1:-0.84465591674;NKX3-2:-0.851717157953;PATZ1:-0.913572050871;MED-1{core}:-0.933091844688;SP1:-0.933177078332;TFAP2{A,C}:-0.934960090768;TEAD1:-0.940771069636;FOXO1,3,4:-0.993288645396;HMX1:-0.99676301474;HSF1,2:-1.01557322137;T:-1.01820601853;MAZ:-1.03692846654;FOX{D1,D2}:-1.05657447464;TP53:-1.07590686961;MTE{core}:-1.08449087795;TLX1..3_NFIC{dimer}:-1.10982025127;JUN:-1.13761981831;SPZ1:-1.18209274696;LMO2:-1.22103563472;ATF2:-1.26064109372;ADNP_IRX_SIX_ZHX:-1.44259635166;TBX4,5:-1.4993766992;NFIX:-1.52252587581;GFI1B:-1.64015411173;MAFB:-1.65717290087;NR3C1:-1.67203595255;TFCP2:-1.68455065825;NR1H4:-1.72050204635 | |top_motifs=RXR{A,B,G}_{NR1H2,PPAR}dimers:1.82251741506;ALX1:1.60046636006;MYB:1.51014496864;GATA6:1.43803514315;POU3F1..4:1.28503625799;RUNX1..3:1.213120772;E2F1..5:1.21270208545;ELF1,2,4:1.16621426064;FOX{I1,J2}:1.15370540865;ZBTB16:1.12347628545;NANOG{mouse}:0.9711915973;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.966690243268;NR5A1,2:0.89284687112;YY1:0.863561841387;PITX1..3:0.860690574659;DMAP1_NCOR{1,2}_SMARC:0.850816457601;POU2F1..3:0.816732653207;SPIB:0.77378353677;TEF:0.734746148279;AIRE:0.722730542083;HES1:0.721295822781;ZNF143:0.698637444873;ETS1,2:0.615351258622;HIF1A:0.592431969204;AR:0.570063825336;SPI1:0.563996537351;NFY{A,B,C}:0.543808010815;FOXP1:0.538830977117;NKX3-1:0.536056065364;IKZF2:0.530129460393;ELK1,4_GABP{A,B1}:0.522952470666;CUX2:0.453742475924;bHLH_family:0.43367396961;CREB1:0.400400532791;FOXD3:0.397752213684;BREu{core}:0.391219678878;NKX2-1,4:0.376380344731;CDX1,2,4:0.371909629664;TOPORS:0.334131636326;PRRX1,2:0.332742614445;POU1F1:0.330770842885;PAX6:0.323813378461;NRF1:0.32318119253;FOXQ1:0.277955507292;STAT1,3:0.277833929788;GCM1,2:0.26778530128;SOX17:0.257731071984;NKX2-3_NKX2-5:0.255499404095;PBX1:0.25201174212;PPARG:0.245287436818;FOXP3:0.228221739608;STAT5{A,B}:0.220984368216;GATA4:0.172592864189;PAX2:0.141444977409;PAX8:0.137724851541;DBP:0.12018232416;NKX2-2,8:0.0919340980318;NFIL3:0.0902555244316;FOXN1:0.0895532984825;ARID5B:0.0816344714589;HAND1,2:0.0603174581204;ONECUT1,2:0.0462368444714;HOXA9_MEIS1:0.0382713105365;MYOD1:0.0337364461919;SOX{8,9,10}:0.0101509197323;CRX:-0.00391005044479;HOX{A4,D4}:-0.022012680457;PAX3,7:-0.0427272595286;NFE2L1:-0.0598213806858;ATF5_CREB3:-0.0615839026237;RORA:-0.0803613540933;HBP1_HMGB_SSRP1_UBTF:-0.0908567417381;HNF1A:-0.0997422439477;PDX1:-0.101734363276;TFAP4:-0.103722224939;HNF4A_NR2F1,2:-0.106563930207;AHR_ARNT_ARNT2:-0.110251915713;NFATC1..3:-0.121807631722;EVI1:-0.131043571233;ZNF384:-0.138701070062;VSX1,2:-0.140139691502;RBPJ:-0.152868927786;RFX2..5_RFXANK_RFXAP:-0.157059223126;NFE2L2:-0.159671516247;EP300:-0.160159258928;NR6A1:-0.172371084788;POU6F1:-0.177303477776;ESRRA:-0.181618864913;RXR{A,B,G}:-0.182677756012;ZIC1..3:-0.187397279154;REST:-0.189613781293;ZNF423:-0.202408318313;PAX1,9:-0.20291396558;MEF2{A,B,C,D}:-0.204399140993;STAT2,4,6:-0.215907128487;XBP1:-0.221466436297;TFDP1:-0.226765638858;HIC1:-0.230755132874;EN1,2:-0.235537151711;OCT4_SOX2{dimer}:-0.239204558564;LHX3,4:-0.245197704973;FOXA2:-0.252041569267;NFE2:-0.261906367665;NKX6-1,2:-0.272474057484;NANOG:-0.278122872767;TLX2:-0.288280215231;LEF1_TCF7_TCF7L1,2:-0.306300598808;ZNF238:-0.307954507353;ZNF148:-0.324099356463;PRDM1:-0.334894264269;FOX{F1,F2,J1}:-0.342571104643;BACH2:-0.347379075933;CEBPA,B_DDIT3:-0.351479246087;NFKB1_REL_RELA:-0.35782869466;ZFP161:-0.386486896318;PAX5:-0.397311326406;MYBL2:-0.397645094876;FOS_FOS{B,L1}_JUN{B,D}:-0.413240179849;HOX{A5,B5}:-0.432326807757;SNAI1..3:-0.454131774082;RREB1:-0.454909435578;SRF:-0.48264364189;SOX2:-0.49245714354;IRF1,2:-0.515505873305;UFEwm:-0.516729819273;ESR1:-0.522356656917;ATF4:-0.530387331267;KLF4:-0.532666472161;ZEB1:-0.535864704517;PAX4:-0.554237778102;POU5F1:-0.564997746952;MTF1:-0.574423640037;HLF:-0.602330331494;TGIF1:-0.611049812653;FOSL2:-0.617941820386;TAL1_TCF{3,4,12}:-0.62457168657;NHLH1,2:-0.628158392045;RXRA_VDR{dimer}:-0.633356090203;EGR1..3:-0.636845038752;SOX5:-0.638218159445;MZF1:-0.645810159016;TBP:-0.655876705993;GTF2A1,2:-0.660220663225;EBF1:-0.664419812861;TFAP2B:-0.671757277043;FOXM1:-0.690317886884;MYFfamily:-0.692204577524;SMAD1..7,9:-0.701281053061;IKZF1:-0.702550177049;HOX{A6,A7,B6,B7}:-0.707840175875;ZBTB6:-0.716885654245;ALX4:-0.72618240043;GLI1..3:-0.729999151786;GTF2I:-0.734200933851;BPTF:-0.736894653883;RFX1:-0.753023977136;SREBF1,2:-0.767400270442;GFI1:-0.770944631481;ATF6:-0.79910706202;XCPE1{core}:-0.818890445892;FOXL1:-0.819384273494;HMGA1,2:-0.819854195907;CDC5L:-0.825588256869;IRF7:-0.842641904338;GZF1:-0.84465591674;NKX3-2:-0.851717157953;PATZ1:-0.913572050871;MED-1{core}:-0.933091844688;SP1:-0.933177078332;TFAP2{A,C}:-0.934960090768;TEAD1:-0.940771069636;FOXO1,3,4:-0.993288645396;HMX1:-0.99676301474;HSF1,2:-1.01557322137;T:-1.01820601853;MAZ:-1.03692846654;FOX{D1,D2}:-1.05657447464;TP53:-1.07590686961;MTE{core}:-1.08449087795;TLX1..3_NFIC{dimer}:-1.10982025127;JUN:-1.13761981831;SPZ1:-1.18209274696;LMO2:-1.22103563472;ATF2:-1.26064109372;ADNP_IRX_SIX_ZHX:-1.44259635166;TBX4,5:-1.4993766992;NFIX:-1.52252587581;GFI1B:-1.64015411173;MAFB:-1.65717290087;NR3C1:-1.67203595255;TFCP2:-1.68455065825;NR1H4:-1.72050204635 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10801-110I9;search_select_hide=table117:FF:10801-110I9 | |||
}} | }} |
Latest revision as of 15:05, 3 June 2020
Name: | chronic myeloblastic leukemia (CML) cell line:KCL-22 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11886 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11886
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11886
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.14 |
10 | 10 | 0.00648 |
100 | 100 | 0.58 |
101 | 101 | 0.737 |
102 | 102 | 0.404 |
103 | 103 | 0.83 |
104 | 104 | 0.804 |
105 | 105 | 0.966 |
106 | 106 | 0.68 |
107 | 107 | 0.837 |
108 | 108 | 0.501 |
109 | 109 | 0.0793 |
11 | 11 | 0.0515 |
110 | 110 | 0.118 |
111 | 111 | 0.0802 |
112 | 112 | 0.586 |
113 | 113 | 0.987 |
114 | 114 | 0.0376 |
115 | 115 | 0.807 |
116 | 116 | 0.197 |
117 | 117 | 0.0133 |
118 | 118 | 0.0319 |
119 | 119 | 0.897 |
12 | 12 | 0.886 |
120 | 120 | 0.274 |
121 | 121 | 0.833 |
122 | 122 | 0.843 |
123 | 123 | 0.00771 |
124 | 124 | 0.466 |
125 | 125 | 0.24 |
126 | 126 | 0.493 |
127 | 127 | 0.0801 |
128 | 128 | 0.465 |
129 | 129 | 0.695 |
13 | 13 | 0.00211 |
130 | 130 | 0.795 |
131 | 131 | 0.389 |
132 | 132 | 0.622 |
133 | 133 | 0.622 |
134 | 134 | 0.917 |
135 | 135 | 0.596 |
136 | 136 | 0.204 |
137 | 137 | 0.459 |
138 | 138 | 0.279 |
139 | 139 | 0.978 |
14 | 14 | 0.891 |
140 | 140 | 0.333 |
141 | 141 | 0.114 |
142 | 142 | 0.482 |
143 | 143 | 0.212 |
144 | 144 | 0.295 |
145 | 145 | 0.206 |
146 | 146 | 0.623 |
147 | 147 | 0.00872 |
148 | 148 | 0.0601 |
149 | 149 | 0.221 |
15 | 15 | 0.255 |
150 | 150 | 0.705 |
151 | 151 | 0.79 |
152 | 152 | 0.663 |
153 | 153 | 0.595 |
154 | 154 | 0.892 |
155 | 155 | 0.0387 |
156 | 156 | 0.27 |
157 | 157 | 0.167 |
158 | 158 | 0.869 |
159 | 159 | 0.364 |
16 | 16 | 0.397 |
160 | 160 | 0.386 |
161 | 161 | 0.18 |
162 | 162 | 0.455 |
163 | 163 | 0.999 |
164 | 164 | 0.111 |
165 | 165 | 0.527 |
166 | 166 | 0.0499 |
167 | 167 | 0.173 |
168 | 168 | 0.107 |
169 | 169 | 0.0307 |
17 | 17 | 0.858 |
18 | 18 | 0.206 |
19 | 19 | 0.923 |
2 | 2 | 0.568 |
20 | 20 | 0.218 |
21 | 21 | 0.302 |
22 | 22 | 0.387 |
23 | 23 | 0.0428 |
24 | 24 | 0.184 |
25 | 25 | 0.144 |
26 | 26 | 0.0237 |
27 | 27 | 0.816 |
28 | 28 | 0.853 |
29 | 29 | 0.12 |
3 | 3 | 0.144 |
30 | 30 | 0.1 |
31 | 31 | 0.187 |
32 | 32 | 0.00978 |
33 | 33 | 0.502 |
34 | 34 | 0.749 |
35 | 35 | 0.659 |
36 | 36 | 0.0653 |
37 | 37 | 0.251 |
38 | 38 | 0.41 |
39 | 39 | 0.212 |
4 | 4 | 0.284 |
40 | 40 | 0.347 |
41 | 41 | 0.86 |
42 | 42 | 0.259 |
43 | 43 | 0.607 |
44 | 44 | 0.0218 |
45 | 45 | 0.42 |
46 | 46 | 0.0739 |
47 | 47 | 0.0299 |
48 | 48 | 0.00765 |
49 | 49 | 0.249 |
5 | 5 | 0.757 |
50 | 50 | 0.955 |
51 | 51 | 0.655 |
52 | 52 | 0.0973 |
53 | 53 | 0.123 |
54 | 54 | 0.975 |
55 | 55 | 0.109 |
56 | 56 | 0.95 |
57 | 57 | 0.035 |
58 | 58 | 0.13 |
59 | 59 | 0.469 |
6 | 6 | 0.333 |
60 | 60 | 0.777 |
61 | 61 | 0.0437 |
62 | 62 | 0.158 |
63 | 63 | 0.554 |
64 | 64 | 0.136 |
65 | 65 | 0.761 |
66 | 66 | 0.0533 |
67 | 67 | 0.471 |
68 | 68 | 0.908 |
69 | 69 | 0.871 |
7 | 7 | 0.0395 |
70 | 70 | 0.882 |
71 | 71 | 0.0317 |
72 | 72 | 0.683 |
73 | 73 | 0.179 |
74 | 74 | 0.654 |
75 | 75 | 0.0101 |
76 | 76 | 0.0648 |
77 | 77 | 0.844 |
78 | 78 | 0.0722 |
79 | 79 | 0.393 |
8 | 8 | 0.0556 |
80 | 80 | 0.0787 |
81 | 81 | 0.646 |
82 | 82 | 0.981 |
83 | 83 | 0.398 |
84 | 84 | 0.339 |
85 | 85 | 0.232 |
86 | 86 | 0.783 |
87 | 87 | 0.127 |
88 | 88 | 0.446 |
89 | 89 | 0.625 |
9 | 9 | 0.749 |
90 | 90 | 0.496 |
91 | 91 | 0.666 |
92 | 92 | 0.281 |
93 | 93 | 0.438 |
94 | 94 | 0.935 |
95 | 95 | 0.00306 |
96 | 96 | 0.367 |
97 | 97 | 0.281 |
98 | 98 | 0.219 |
99 | 99 | 0.557 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11886
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0104137 KCL-22 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
1036 (chronic leukemia)
8692 (myeloid leukemia)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0102580 (chronic myeloid leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0100740 (myeloid leukemia cell line sample)
0104137 (KCL-22 cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)