FF:11882-125D1: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005810 | |DRA_sample_Accession=CAGE@SAMD00005810 | ||
|accession_numbers=CAGE;DRX008158;DRR009030;DRZ000455;DRZ001840 | |accession_numbers=CAGE;DRX008158;DRR009030;DRZ000455;DRZ001840;DRZ011805;DRZ013190 | ||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase= | |data_phase=2 | ||
|datafreeze_phase= | |datafreeze_phase=2 | ||
|def= | |def= | ||
|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.95!8845.02!PLEK;;chr16:85932760..85932775,+!p1@IRF8!3.06!1142.41!IRF8;;chr10:35484053..35484076,+!p1@CREM!2.70!1201.49!CREM;;chr10:64576105..64576133,-!p1@EGR2!2.69!976.05!EGR2;;chr11:47400078..47400106,-!p1@SPI1!2.62!415.48!SPI1;;chr7:115670804..115670825,-!p1@TFEC!2.47!291.68!TFEC;;chr12:54778471..54778528,-!p1@ZNF385A!2.29!193.73!ZNF385A;;chr11:64764435..64764449,-!p1@BATF2!2.20!213.06!BATF2;;chr1:158985493..158985535,+!p4@IFI16!2.14!205.68!IFI16;;chr6:106534192..106534224,+!p1@PRDM1!2.07!314.92!PRDM1;;chr11:47399947..47399961,-!p3@SPI1!2.06!112.72!SPI1;;chr20:39317868..39317884,-!p1@MAFB!2.05!1245.80!MAFB;;chr21:36260295..36260310,-!p3@RUNX1!2.05!175.49!RUNX1;;chr2:68592394..68592405,+!p2@PLEK!2.04!108.38!PLEK;;chr10:35484090..35484104,+!p6@CREM!2.04!107.94!CREM;;chr16:31885093..31885165,+!p1@ZNF267!2.02!1486.87!ZNF267;;chr19:45971246..45971265,+!p1@FOSB!2.01!1769.87!FOSB;;chr6:36355431..36355466,-!p1@ETV7!2.01!101.43!ETV7;;chr21:34442439..34442455,+!p1@OLIG1!1.98!94.48!OLIG1;;chr10:31288398..31288455,-!p2@ZNF438!1.93!97.30!ZNF438;;chr11:47400062..47400077,-!p2@SPI1!1.93!84.05!SPI1;;chr5:131826457..131826514,-!p1@IRF1!1.91!2956.59!IRF1;;chr17:45810594..45810608,+!p1@TBX21!1.89!76.67!TBX21;;chr21:30671690..30671762,+!p2@BACH1!1.88!241.73!BACH1;;chr10:64018918..64018936,+!p2@ZNF365!1.88!75.36!ZNF365;;chr8:22550982..22550999,-!p1@EGR3!1.83!180.05!EGR3;;chr6:106534230..106534254,+!p2@PRDM1!1.81!155.94!PRDM1;;chr2:231084639..231084654,-!p2@SP110!1.79!99.26!SP110;;chr2:157189180..157189290,-!p1@NR4A2!1.78!294.29!NR4A2;;chr1:158979872..158979898,+!p3@IFI16!1.78!174.40!IFI16;;chr2:145277640..145277771,-!p1@ZEB2!1.77!735.18!ZEB2;;chr11:65430554..65430579,-!p3@RELA!1.76!139.87!RELA;;chr14:75988831..75988847,+!p2@BATF!1.74!53.43!BATF;;chr10:31288370..31288393,-!p3@ZNF438!1.73!52.99!ZNF438;;chr22:38597987..38598021,+!p2@MAFF!1.72!299.72!MAFF;;chr12:72056800..72056834,+!p1@THAP2!1.72!67.76!THAP2;;chr11:615942..615957,-!p1@IRF7!1.71!449.15!IRF7;;chr2:231090471..231090504,+!p2@SP140!1.71!49.74!SP140;;chr7:128577972..128578047,+!p1@IRF5!1.70!76.23!IRF5;;chr2:97202480..97202499,+!p1@ARID5A!1.69!456.31!ARID5A;;chr11:47399996..47400014,-!p4@SPI1!1.68!46.91!SPI1;;chr21:30671235..30671253,+!p1@BACH1!1.66!536.67!BACH1;;chr1:25256756..25256774,-!p1@RUNX3!1.66!82.53!RUNX3;;chr11:47400032..47400043,-!p5@SPI1!1.66!44.31!SPI1;;chr1:212782094..212782109,+!p1@ATF3!1.65!1111.14!ATF3;;chr21:36421535..36421610,-!p2@RUNX1!1.64!145.08!RUNX1;;chr3:12329397..12329433,+!p2@PPARG!1.64!95.35!PPARG;;chr2:70142232..70142251,+!p1@MXD1!1.63!224.57!MXD1;;chr19:33793430..33793447,-!p1@CEBPA!1.62!163.33!CEBPA;;chr1:221052733..221052749,+!p2@HLX!1.61!51.26!HLX;;chr12:54778351..54778378,-!p6@ZNF385A!1.61!40.18!ZNF385A;;chr3:12330560..12330579,+!p1@PPARG!1.60!44.74!PPARG;;chr12:72056749..72056767,+!p6@THAP2!1.60!43.00!THAP2;;chr7:50344289..50344323,+!p1@IKZF1!1.60!38.66!IKZF1;;chr10:35484804..35484902,+!p2@CREM!1.59!140.52!CREM;;chr11:65430535..65430549,-!p4@RELA!1.59!44.09!RELA;;chr19:45251395..45251432,+!p8@BCL3!1.59!37.79!BCL3;;chr14:75988771..75988826,+!p1@BATF!1.56!46.70!BATF;;chr9:102584159..102584174,+!p2@NR4A3!1.55!60.81!NR4A3;;chr19:50432132..50432217,+!p2@ATF5!1.55!41.27!ATF5;;chrX:153305787..153305807,-!p3@MECP2!1.55!34.10!MECP2;;chr4:106068026..106068084,+!p1@TET2!1.51!273.22!TET2;;chr13:41593425..41593480,-!p1@ELF1!1.51!191.34!ELF1;;chr12:72056773..72056796,+!p3@THAP2!1.51!40.40!THAP2;;chr21:34398234..34398250,+!p1@OLIG2!1.51!31.06!OLIG2;;chr10:51572408..51572454,+!p3@NCOA4!1.49!168.76!NCOA4;;chr2:145275162..145275202,-!p2@ZEB2!1.49!168.32!ZEB2;;chr16:79634624..79634642,-!p1@MAF!1.49!114.24!MAF;;chr6:126240380..126240430,+!p2@NCOA7!1.49!75.36!NCOA7;;chr17:38497662..38497713,+!p4@RARA!1.48!33.66!RARA;;chr3:187463179..187463201,-!p2@BCL6!1.47!113.81!BCL6;;chr9:110252035..110252057,-!p1@KLF4!1.46!428.30!KLF4;;chr6:15246200..15246214,+!p2@JARID2!1.46!75.36!JARID2;;chr11:47400045..47400060,-!p6@SPI1!1.46!27.80!SPI1;;chr6:106535598..106535637,+!p7@PRDM1!1.45!27.15!PRDM1;;chr12:52445218..52445237,+!p1@NR4A1!1.44!322.31!NR4A1;;chr12:48298765..48298783,-!p2@VDR!1.44!53.86!VDR;;chr21:36260343..36260402,-!p6@RUNX1!1.44!41.70!RUNX1;;chr14:35872453..35872485,-!p2@NFKBIA!1.43!63.20!NFKBIA;;chr6:144385698..144385742,-!p2@PLAGL1!1.43!31.49!PLAGL1;;chr6:391743..391759,+!p1@IRF4!1.43!26.06!IRF4;;chr8:53373491..53373506,-!p4@ST18!1.39!23.67!ST18;;chr20:48599506..48599526,+!p1@SNAI1!1.38!144.43!SNAI1;;chr12:11802753..11802834,+!p2@ETV6!1.38!110.77!ETV6;;chr22:38598057..38598071,+!p3@MAFF!1.38!52.99!MAFF;;chr13:41635029..41635044,-!p4@ELF1!1.38!47.78!ELF1;;chr11:47399920..47399931,-!p7@SPI1!1.38!23.24!SPI1;;chr14:75745523..75745537,+!p1@FOS!1.37!2604.96!FOS;;chr20:48807351..48807384,+!p1@CEBPB!1.37!2176.23!CEBPB;;chr2:61108695..61108753,+!p1@REL!1.37!151.38!REL;;chr18:3449720..3449749,+!p2@TGIF1!1.37!46.70!TGIF1;;chr6:126240463..126240489,+!p6@NCOA7!1.37!24.98!NCOA7;;chr9:129567282..129567353,+!p1@ZBTB43!1.35!274.09!ZBTB43;;chr3:39195037..39195069,-!p2@CSRNP1!1.35!129.66!CSRNP1;;chr2:191885737..191885750,-!p4@STAT1!1.35!21.28!STAT1;;chrX:129244454..129244488,-!p1@ELF4!1.33!143.78!ELF4;;chr11:615570..615721,-!p2@IRF7!1.33!39.75!IRF7;;chr19:36391434..36391450,-!p1@NFKBID!1.33!39.31!NFKBID;;chr1:161736038..161736056,+!p4@ATF6!1.32!46.04!ATF6;;chr3:39195139..39195150,-!p3@CSRNP1!1.32!25.19!CSRNP1;;chr2:231090433..231090469,+!p1@SP140!1.32!19.98!SP140;;chr9:102584128..102584144,+!p3@NR4A3!1.31!36.49!NR4A3;;chr5:142782823..142782854,-!p3@NR3C1!1.31!27.58!NR3C1;;chr4:83822199..83822239,+!p2@THAP9!1.31!23.24!THAP9;;chr21:36260325..36260341,-!p14@RUNX1!1.31!19.33!RUNX1;;chr22:38598086..38598105,+!p1@MAFF!1.30!195.69!MAFF;;chr10:51572339..51572376,+!p4@NCOA4!1.30!41.92!NCOA4;;chr6:126240442..126240459,+!p4@NCOA7!1.30!24.11!NCOA7;;chr8:116681123..116681143,-!p4@TRPS1!1.29!35.84!TRPS1;;chr2:231280954..231280965,+!p2@SP100!1.29!33.45!SP100;;chr1:221052776..221052799,+!p1@HLX!1.29!32.80!HLX;;chr2:28618532..28618610,+!p4@FOSL2!1.29!31.49!FOSL2;;chr18:3449618..3449634,+!p13@TGIF1!1.29!23.02!TGIF1;;chr21:30672433..30672464,+!p6@BACH1!1.29!18.68!BACH1;;chr1:158979792..158979814,+!p2@IFI16!1.28!167.24!IFI16;;chr10:104155480..104155534,+!p2@NFKB2!1.28!114.68!NFKB2;;chr14:35872962..35873025,-!p3@NFKBIA!1.28!45.39!NFKBIA;;chr2:70314240..70314256,+!p4@PCBP1!1.28!37.14!PCBP1;;chr8:116681150..116681164,-!p5@TRPS1!1.28!34.97!TRPS1;;chr19:54041669..54041697,+!p2@ZNF331!1.28!18.24!ZNF331;;chr9:102584262..102584276,+!p1@NR4A3!1.27!38.66!NR4A3;;chr1:212738742..212738755,+!p2@ATF3!1.27!17.81!ATF3;;chr4:106066712..106066728,+!p8@TET2!1.27!17.81!TET2;;chr3:126191157..126191171,-!p4@ZXDC!1.27!17.59!ZXDC;;chr16:79634595..79634620,-!p2@MAF!1.26!30.84!MAF;;chr12:57914700..57914737,+!p7@MBD6!1.26!17.38!MBD6;;chr2:145271342..145271377,-!p5@ZEB2!1.26!17.38!ZEB2;;chr10:31288329..31288353,-!p7@ZNF438!1.26!17.16!ZNF438;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.25!16.72!ZBED1;;chr11:65430038..65430053,-!p12@RELA!1.24!16.29!RELA;;chr3:150126101..150126118,+!p6@TSC22D2!1.23!26.06!TSC22D2;;chr18:3449586..3449617,+!p8@TGIF1!1.23!25.63!TGIF1;;chr4:185395590..185395627,-!p3@IRF2!1.23!19.76!IRF2;;chr14:35873947..35873965,-!p1@NFKBIA!1.22!954.76!NFKBIA;;chr10:35416142..35416169,+!p3@CREM!1.22!41.05!CREM;;chr18:3448455..3448480,+!p5@TGIF1!1.22!28.45!TGIF1;;chr2:231084659..231084721,-!p1@SP110!1.21!348.81!SP110;;chr1:158979851..158979865,+!p5@IFI16!1.21!33.23!IFI16;;chr2:145277882..145277967,-!p3@ZEB2!1.21!26.06!ZEB2;;chr17:38497715..38497734,+!p8@RARA!1.21!15.20!RARA;;chr19:45250948..45250998,+!p3@BCL3!1.20!37.14!BCL3;;chr4:83822294..83822306,+!p8@THAP9!1.19!14.55!THAP9;;chr1:158979922..158979933,+!p13@IFI16!1.19!14.33!IFI16;;chr1:25256439..25256476,-!p3@RUNX3!1.19!14.33!RUNX3;;chr4:103422499..103422632,+!p1@NFKB1!1.18!292.34!NFKB1;;chr6:44233252..44233296,-!p1@NFKBIE!1.18!138.35!NFKBIE;;chr19:47616992..47617011,-!p4@ZC3H4!1.17!29.10!ZC3H4;;chr20:48807456..48807475,+!p3@CEBPB!1.17!26.71!CEBPB;;chr21:30672734..30672748,+!p11@BACH1!1.17!13.90!BACH1;;chr2:238600998..238601013,+!p5@LRRFIP1!1.17!13.68!LRRFIP1;;chrX:129244430..129244442,-!p5@ELF4!1.17!13.68!ELF4;;chr8:116681194..116681214,-!p1@TRPS1!1.16!125.54!TRPS1;;chr7:28725740..28725778,+!p1@CREB5!1.16!120.32!CREB5;;chr16:89787973..89788001,+!p3@ZNF276!1.16!26.06!ZNF276;;chr8:81397846..81397860,+!p3@ZBTB10!1.16!16.72!ZBTB10;;chr2:28615716..28615733,+!p1@FOSL2!1.15!617.47!FOSL2;;chr3:39195075..39195088,-!p1@CSRNP1!1.15!82.10!CSRNP1;;chr10:104154246..104154347,+!p3@NFKB2!1.15!79.93!NFKB2;;chr12:48298785..48298828,-!p1@VDR!1.15!68.85!VDR;;chr2:231084820..231084836,-!p5@SP110!1.15!14.99!SP110;;chr11:65429891..65429915,-!p7@RELA!1.15!13.03!RELA;;chr3:170075436..170075520,+!p1@SKIL!1.14!272.14!SKIL;;chr4:185395633..185395651,-!p2@IRF2!1.14!20.42!IRF2;;chr4:106066730..106066754,+!p6@TET2!1.14!12.81!TET2;;chr14:24630465..24630531,+!p1@IRF9!1.13!478.25!IRF9;;chr21:36260980..36261011,-!p1@RUNX1!1.13!353.37!RUNX1;;chr7:17338266..17338282,+!p1@AHR!1.13!134.01!AHR;;chr9:110250697..110250738,-!p2@KLF4!1.13!14.55!KLF4;;chr13:41593392..41593403,-!p7@ELF1!1.13!12.38!ELF1;;chr2:157199008..157199023,-!p3@NR4A2!1.12!25.85!NR4A2;;chr5:88178983..88179012,-!p1@MEF2C!1.11!92.74!MEF2C;;chr16:3285119..3285133,-!p2@ZNF200!1.11!24.11!ZNF200;;chr2:61108808..61108821,+!p3@REL!1.11!14.99!REL;;chr5:71803177..71803255,-!p1@ZNF366!1.11!11.95!ZNF366;;chr10:3827371..3827386,-!p2@KLF6!1.10!98.17!KLF6;;chr8:116681409..116681431,-!p2@TRPS1!1.10!31.71!TRPS1;;chr8:71316428..71316459,-!p2@NCOA2!1.10!19.76!NCOA2;;chr20:48807615..48807644,+!p6@CEBPB!1.10!19.55!CEBPB;;chr2:145275228..145275241,-!p11@ZEB2!1.10!14.12!ZEB2;;chr4:83822246..83822277,+!p5@THAP9!1.10!11.51!THAP9;;chr19:54058073..54058088,+!p1@ZNF331!1.10!11.51!ZNF331;;chr18:3449527..3449582,+!p6@TGIF1!1.09!21.72!TGIF1;;chr19:19496539..19496576,+!p8@GATAD2A!1.09!19.76!GATAD2A;;chr6:15246261..15246312,+!p1@JARID2!1.08!267.36!JARID2;;chr9:88969339..88969422,-!p2@ZCCHC6!1.08!86.22!ZCCH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| |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.95!8845.02!PLEK;;chr16:85932760..85932775,+!p1@IRF8!3.06!1142.41!IRF8;;chr10:35484053..35484076,+!p1@CREM!2.70!1201.49!CREM;;chr10:64576105..64576133,-!p1@EGR2!2.69!976.05!EGR2;;chr11:47400078..47400106,-!p1@SPI1!2.62!415.48!SPI1;;chr7:115670804..115670825,-!p1@TFEC!2.47!291.68!TFEC;;chr12:54778471..54778528,-!p1@ZNF385A!2.29!193.73!ZNF385A;;chr11:64764435..64764449,-!p1@BATF2!2.20!213.06!BATF2;;chr1:158985493..158985535,+!p4@IFI16!2.14!205.68!IFI16;;chr6:106534192..106534224,+!p1@PRDM1!2.07!314.92!PRDM1;;chr11:47399947..47399961,-!p3@SPI1!2.06!112.72!SPI1;;chr20:39317868..39317884,-!p1@MAFB!2.05!1245.80!MAFB;;chr21:36260295..36260310,-!p3@RUNX1!2.05!175.49!RUNX1;;chr2:68592394..68592405,+!p2@PLEK!2.04!108.38!PLEK;;chr10:35484090..35484104,+!p6@CREM!2.04!107.94!CREM;;chr16:31885093..31885165,+!p1@ZNF267!2.02!1486.87!ZNF267;;chr19:45971246..45971265,+!p1@FOSB!2.01!1769.87!FOSB;;chr6:36355431..36355466,-!p1@ETV7!2.01!101.43!ETV7;;chr21:34442439..34442455,+!p1@OLIG1!1.98!94.48!OLIG1;;chr10:31288398..31288455,-!p2@ZNF438!1.93!97.30!ZNF438;;chr11:47400062..47400077,-!p2@SPI1!1.93!84.05!SPI1;;chr5:131826457..131826514,-!p1@IRF1!1.91!2956.59!IRF1;;chr17:45810594..45810608,+!p1@TBX21!1.89!76.67!TBX21;;chr21:30671690..30671762,+!p2@BACH1!1.88!241.73!BACH1;;chr10:64018918..64018936,+!p2@ZNF365!1.88!75.36!ZNF365;;chr8:22550982..22550999,-!p1@EGR3!1.83!180.05!EGR3;;chr6:106534230..106534254,+!p2@PRDM1!1.81!155.94!PRDM1;;chr2:231084639..231084654,-!p2@SP110!1.79!99.26!SP110;;chr2:157189180..157189290,-!p1@NR4A2!1.78!294.29!NR4A2;;chr1:158979872..158979898,+!p3@IFI16!1.78!174.40!IFI16;;chr2:145277640..145277771,-!p1@ZEB2!1.77!735.18!ZEB2;;chr11:65430554..65430579,-!p3@RELA!1.76!139.87!RELA;;chr14:75988831..75988847,+!p2@BATF!1.74!53.43!BATF;;chr10:31288370..31288393,-!p3@ZNF438!1.73!52.99!ZNF438;;chr22:38597987..38598021,+!p2@MAFF!1.72!299.72!MAFF;;chr12:72056800..72056834,+!p1@THAP2!1.72!67.76!THAP2;;chr11:615942..615957,-!p1@IRF7!1.71!449.15!IRF7;;chr2:231090471..231090504,+!p2@SP140!1.71!49.74!SP140;;chr7:128577972..128578047,+!p1@IRF5!1.70!76.23!IRF5;;chr2:97202480..97202499,+!p1@ARID5A!1.69!456.31!ARID5A;;chr11:47399996..47400014,-!p4@SPI1!1.68!46.91!SPI1;;chr21:30671235..30671253,+!p1@BACH1!1.66!536.67!BACH1;;chr1:25256756..25256774,-!p1@RUNX3!1.66!82.53!RUNX3;;chr11:47400032..47400043,-!p5@SPI1!1.66!44.31!SPI1;;chr1:212782094..212782109,+!p1@ATF3!1.65!1111.14!ATF3;;chr21:36421535..36421610,-!p2@RUNX1!1.64!145.08!RUNX1;;chr3:12329397..12329433,+!p2@PPARG!1.64!95.35!PPARG;;chr2:70142232..70142251,+!p1@MXD1!1.63!224.57!MXD1;;chr19:33793430..33793447,-!p1@CEBPA!1.62!163.33!CEBPA;;chr1:221052733..221052749,+!p2@HLX!1.61!51.26!HLX;;chr12:54778351..54778378,-!p6@ZNF385A!1.61!40.18!ZNF385A;;chr3:12330560..12330579,+!p1@PPARG!1.60!44.74!PPARG;;chr12:72056749..72056767,+!p6@THAP2!1.60!43.00!THAP2;;chr7:50344289..50344323,+!p1@IKZF1!1.60!38.66!IKZF1;;chr10:35484804..35484902,+!p2@CREM!1.59!140.52!CREM;;chr11:65430535..65430549,-!p4@RELA!1.59!44.09!RELA;;chr19:45251395..45251432,+!p8@BCL3!1.59!37.79!BCL3;;chr14:75988771..75988826,+!p1@BATF!1.56!46.70!BATF;;chr9:102584159..102584174,+!p2@NR4A3!1.55!60.81!NR4A3;;chr19:50432132..50432217,+!p2@ATF5!1.55!41.27!ATF5;;chrX:153305787..153305807,-!p3@MECP2!1.55!34.10!MECP2;;chr4:106068026..106068084,+!p1@TET2!1.51!273.22!TET2;;chr13:41593425..41593480,-!p1@ELF1!1.51!191.34!ELF1;;chr12:72056773..72056796,+!p3@THAP2!1.51!40.40!THAP2;;chr21:34398234..34398250,+!p1@OLIG2!1.51!31.06!OLIG2;;chr10:51572408..51572454,+!p3@NCOA4!1.49!168.76!NCOA4;;chr2:145275162..145275202,-!p2@ZEB2!1.49!168.32!ZEB2;;chr16:79634624..79634642,-!p1@MAF!1.49!114.24!MAF;;chr6:126240380..126240430,+!p2@NCOA7!1.49!75.36!NCOA7;;chr17:38497662..38497713,+!p4@RARA!1.48!33.66!RARA;;chr3:187463179..187463201,-!p2@BCL6!1.47!113.81!BCL6;;chr9:110252035..110252057,-!p1@KLF4!1.46!428.30!KLF4;;chr6:15246200..15246214,+!p2@JARID2!1.46!75.36!JARID2;;chr11:47400045..47400060,-!p6@SPI1!1.46!27.80!SPI1;;chr6:106535598..106535637,+!p7@PRDM1!1.45!27.15!PRDM1;;chr12:52445218..52445237,+!p1@NR4A1!1.44!322.31!NR4A1;;chr12:48298765..48298783,-!p2@VDR!1.44!53.86!VDR;;chr21:36260343..36260402,-!p6@RUNX1!1.44!41.70!RUNX1;;chr14:35872453..35872485,-!p2@NFKBIA!1.43!63.20!NFKBIA;;chr6:144385698..144385742,-!p2@PLAGL1!1.43!31.49!PLAGL1;;chr6:391743..391759,+!p1@IRF4!1.43!26.06!IRF4;;chr8:53373491..53373506,-!p4@ST18!1.39!23.67!ST18;;chr20:48599506..48599526,+!p1@SNAI1!1.38!144.43!SNAI1;;chr12:11802753..11802834,+!p2@ETV6!1.38!110.77!ETV6;;chr22:38598057..38598071,+!p3@MAFF!1.38!52.99!MAFF;;chr13:41635029..41635044,-!p4@ELF1!1.38!47.78!ELF1;;chr11:47399920..47399931,-!p7@SPI1!1.38!23.24!SPI1;;chr14:75745523..75745537,+!p1@FOS!1.37!2604.96!FOS;;chr20:48807351..48807384,+!p1@CEBPB!1.37!2176.23!CEBPB;;chr2:61108695..61108753,+!p1@REL!1.37!151.38!REL;;chr18:3449720..3449749,+!p2@TGIF1!1.37!46.70!TGIF1;;chr6:126240463..126240489,+!p6@NCOA7!1.37!24.98!NCOA7;;chr9:129567282..129567353,+!p1@ZBTB43!1.35!274.09!ZBTB43;;chr3:39195037..39195069,-!p2@CSRNP1!1.35!129.66!CSRNP1;;chr2:191885737..191885750,-!p4@STAT1!1.35!21.28!STAT1;;chrX:129244454..129244488,-!p1@ELF4!1.33!143.78!ELF4;;chr11:615570..615721,-!p2@IRF7!1.33!39.75!IRF7;;chr19:36391434..36391450,-!p1@NFKBID!1.33!39.31!NFKBID;;chr1:161736038..161736056,+!p4@ATF6!1.32!46.04!ATF6;;chr3:39195139..39195150,-!p3@CSRNP1!1.32!25.19!CSRNP1;;chr2:231090433..231090469,+!p1@SP140!1.32!19.98!SP140;;chr9:102584128..102584144,+!p3@NR4A3!1.31!36.49!NR4A3;;chr5:142782823..142782854,-!p3@NR3C1!1.31!27.58!NR3C1;;chr4:83822199..83822239,+!p2@THAP9!1.31!23.24!THAP9;;chr21:36260325..36260341,-!p14@RUNX1!1.31!19.33!RUNX1;;chr22:38598086..38598105,+!p1@MAFF!1.30!195.69!MAFF;;chr10:51572339..51572376,+!p4@NCOA4!1.30!41.92!NCOA4;;chr6:126240442..126240459,+!p4@NCOA7!1.30!24.11!NCOA7;;chr8:116681123..116681143,-!p4@TRPS1!1.29!35.84!TRPS1;;chr2:231280954..231280965,+!p2@SP100!1.29!33.45!SP100;;chr1:221052776..221052799,+!p1@HLX!1.29!32.80!HLX;;chr2:28618532..28618610,+!p4@FOSL2!1.29!31.49!FOSL2;;chr18:3449618..3449634,+!p13@TGIF1!1.29!23.02!TGIF1;;chr21:30672433..30672464,+!p6@BACH1!1.29!18.68!BACH1;;chr1:158979792..158979814,+!p2@IFI16!1.28!167.24!IFI16;;chr10:104155480..104155534,+!p2@NFKB2!1.28!114.68!NFKB2;;chr14:35872962..35873025,-!p3@NFKBIA!1.28!45.39!NFKBIA;;chr2:70314240..70314256,+!p4@PCBP1!1.28!37.14!PCBP1;;chr8:116681150..116681164,-!p5@TRPS1!1.28!34.97!TRPS1;;chr19:54041669..54041697,+!p2@ZNF331!1.28!18.24!ZNF331;;chr9:102584262..102584276,+!p1@NR4A3!1.27!38.66!NR4A3;;chr1:212738742..212738755,+!p2@ATF3!1.27!17.81!ATF3;;chr4:106066712..106066728,+!p8@TET2!1.27!17.81!TET2;;chr3:126191157..126191171,-!p4@ZXDC!1.27!17.59!ZXDC;;chr16:79634595..79634620,-!p2@MAF!1.26!30.84!MAF;;chr12:57914700..57914737,+!p7@MBD6!1.26!17.38!MBD6;;chr2:145271342..145271377,-!p5@ZEB2!1.26!17.38!ZEB2;;chr10:31288329..31288353,-!p7@ZNF438!1.26!17.16!ZNF438;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.25!16.72!ZBED1;;chr11:65430038..65430053,-!p12@RELA!1.24!16.29!RELA;;chr3:150126101..150126118,+!p6@TSC22D2!1.23!26.06!TSC22D2;;chr18:3449586..3449617,+!p8@TGIF1!1.23!25.63!TGIF1;;chr4:185395590..185395627,-!p3@IRF2!1.23!19.76!IRF2;;chr14:35873947..35873965,-!p1@NFKBIA!1.22!954.76!NFKBIA;;chr10:35416142..35416169,+!p3@CREM!1.22!41.05!CREM;;chr18:3448455..3448480,+!p5@TGIF1!1.22!28.45!TGIF1;;chr2:231084659..231084721,-!p1@SP110!1.21!348.81!SP110;;chr1:158979851..158979865,+!p5@IFI16!1.21!33.23!IFI16;;chr2:145277882..145277967,-!p3@ZEB2!1.21!26.06!ZEB2;;chr17:38497715..38497734,+!p8@RARA!1.21!15.20!RARA;;chr19:45250948..45250998,+!p3@BCL3!1.20!37.14!BCL3;;chr4:83822294..83822306,+!p8@THAP9!1.19!14.55!THAP9;;chr1:158979922..158979933,+!p13@IFI16!1.19!14.33!IFI16;;chr1:25256439..25256476,-!p3@RUNX3!1.19!14.33!RUNX3;;chr4:103422499..103422632,+!p1@NFKB1!1.18!292.34!NFKB1;;chr6:44233252..44233296,-!p1@NFKBIE!1.18!138.35!NFKBIE;;chr19:47616992..47617011,-!p4@ZC3H4!1.17!29.10!ZC3H4;;chr20:48807456..48807475,+!p3@CEBPB!1.17!26.71!CEBPB;;chr21:30672734..30672748,+!p11@BACH1!1.17!13.90!BACH1;;chr2:238600998..238601013,+!p5@LRRFIP1!1.17!13.68!LRRFIP1;;chrX:129244430..129244442,-!p5@ELF4!1.17!13.68!ELF4;;chr8:116681194..116681214,-!p1@TRPS1!1.16!125.54!TRPS1;;chr7:28725740..28725778,+!p1@CREB5!1.16!120.32!CREB5;;chr16:89787973..89788001,+!p3@ZNF276!1.16!26.06!ZNF276;;chr8:81397846..81397860,+!p3@ZBTB10!1.16!16.72!ZBTB10;;chr2:28615716..28615733,+!p1@FOSL2!1.15!617.47!FOSL2;;chr3:39195075..39195088,-!p1@CSRNP1!1.15!82.10!CSRNP1;;chr10:104154246..104154347,+!p3@NFKB2!1.15!79.93!NFKB2;;chr12:48298785..48298828,-!p1@VDR!1.15!68.85!VDR;;chr2:231084820..231084836,-!p5@SP110!1.15!14.99!SP110;;chr11:65429891..65429915,-!p7@RELA!1.15!13.03!RELA;;chr3:170075436..170075520,+!p1@SKIL!1.14!272.14!SKIL;;chr4:185395633..185395651,-!p2@IRF2!1.14!20.42!IRF2;;chr4:106066730..106066754,+!p6@TET2!1.14!12.81!TET2;;chr14:24630465..24630531,+!p1@IRF9!1.13!478.25!IRF9;;chr21:36260980..36261011,-!p1@RUNX1!1.13!353.37!RUNX1;;chr7:17338266..17338282,+!p1@AHR!1.13!134.01!AHR;;chr9:110250697..110250738,-!p2@KLF4!1.13!14.55!KLF4;;chr13:41593392..41593403,-!p7@ELF1!1.13!12.38!ELF1;;chr2:157199008..157199023,-!p3@NR4A2!1.12!25.85!NR4A2;;chr5:88178983..88179012,-!p1@MEF2C!1.11!92.74!MEF2C;;chr16:3285119..3285133,-!p2@ZNF200!1.11!24.11!ZNF200;;chr2:61108808..61108821,+!p3@REL!1.11!14.99!REL;;chr5:71803177..71803255,-!p1@ZNF366!1.11!11.95!ZNF366;;chr10:3827371..3827386,-!p2@KLF6!1.10!98.17!KLF6;;chr8:116681409..116681431,-!p2@TRPS1!1.10!31.71!TRPS1;;chr8:71316428..71316459,-!p2@NCOA2!1.10!19.76!NCOA2;;chr20:48807615..48807644,+!p6@CEBPB!1.10!19.55!CEBPB;;chr2:145275228..145275241,-!p11@ZEB2!1.10!14.12!ZEB2;;chr4:83822246..83822277,+!p5@THAP9!1.10!11.51!THAP9;;chr19:54058073..54058088,+!p1@ZNF331!1.10!11.51!ZNF331;;chr18:3449527..3449582,+!p6@TGIF1!1.09!21.72!TGIF1;;chr19:19496539..19496576,+!p8@GATAD2A!1.09!19.76!GATAD2A;;chr6:15246261..15246312,+!p1@JARID2!1.08!267.36!JARID2;;chr9:88969339..88969422,-!p2@ZCCHC6!1.08!86.22!ZCCH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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405 | |||
|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057 | |ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 41: | Line 42: | ||
|fonse_treatment_closure=EFO:0000369,FF:0000625,FF:0000631,FF:0011444,FF:11882-125D1 | |fonse_treatment_closure=EFO:0000369,FF:0000625,FF:0000631,FF:0011444,FF:11882-125D1 | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Trehalose%2520dimycolate%2520%2528TDM%2529%252c%2520donor3.CNhs13544.11882-125D1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Trehalose%2520dimycolate%2520%2528TDM%2529%252c%2520donor3.CNhs13544.11882-125D1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Trehalose%2520dimycolate%2520%2528TDM%2529%252c%2520donor3.CNhs13544.11882-125D1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Trehalose%2520dimycolate%2520%2528TDM%2529%252c%2520donor3.CNhs13544.11882-125D1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Trehalose%2520dimycolate%2520%2528TDM%2529%252c%2520donor3.CNhs13544.11882-125D1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11882-125D1 | |id=FF:11882-125D1 | ||
|is_a=EFO:0002091;;FF:0011444 | |is_a=EFO:0002091;;FF:0011444 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs13544 | |library_id=CNhs13544 | ||
|library_id_phase_based= | |library_id_phase_based=2:CNhs13544 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11882 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11882 | |||
|name=CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor3 | |name=CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor3 | ||
|namespace= | |namespace= | ||
Line 51: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13544,LSID1029,release012,COMPLETED | |profile_hcage=CNhs13544,LSID1029,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
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|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 90: | Line 101: | ||
|top_motifs=STAT5{A,B}:6.4778905873;STAT2,4,6:6.18003354626;FOSL2:5.68475478136;NFE2:5.07418563657;NFE2L2:4.92608854988;IRF7:4.81004172826;FOS_FOS{B,L1}_JUN{B,D}:4.73581582326;STAT1,3:4.62069053389;BACH2:4.62043352693;CEBPA,B_DDIT3:4.47472844592;HLF:4.42770105917;IRF1,2:4.19418545682;PAX2:4.02341808358;SREBF1,2:3.93978759112;NFIL3:3.87857229212;SPIB:3.66939531573;NANOG{mouse}:3.46590544287;FOXP3:3.27679368413;EP300:3.18952935985;ETS1,2:3.18640964356;SPI1:3.17019994955;ATF5_CREB3:3.04396449788;ATF4:3.0131838366;ATF6:2.83404035249;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.75049993097;RUNX1..3:2.54821383184;CREB1:2.45593627345;NFKB1_REL_RELA:2.43689819303;DMAP1_NCOR{1,2}_SMARC:2.40266324466;NFE2L1:2.35154590997;JUN:2.34461682581;FOXN1:2.28708612509;HSF1,2:2.14592278594;ATF2:2.01978377796;NR1H4:2.01921598157;TGIF1:1.91632007638;ELF1,2,4:1.88756779092;NFATC1..3:1.83632871687;PAX8:1.69628302426;CDX1,2,4:1.69166229746;MAFB:1.66529876111;ALX4:1.43093483608;HIF1A:1.40958194676;XBP1:1.16504370257;ESRRA:1.00530842989;PPARG:1.00308625958;HOX{A5,B5}:0.896510947241;FOXO1,3,4:0.883670602934;PAX3,7:0.877027328195;HMGA1,2:0.847940571652;SRF:0.801737180141;HMX1:0.708658474131;NR6A1:0.703710720642;RBPJ:0.689122985042;TLX2:0.675675639561;PDX1:0.346761146536;RXRA_VDR{dimer}:0.237615033898;AHR_ARNT_ARNT2:0.215820079799;HBP1_HMGB_SSRP1_UBTF:0.215500583079;MEF2{A,B,C,D}:0.177118641754;FOX{D1,D2}:0.127888329344;RFX2..5_RFXANK_RFXAP:0.109526968289;TBP:0.0862365649116;EN1,2:0.0805365195745;ZBTB16:-0.00196934644258;HES1:-0.0189193879791;GLI1..3:-0.0451781266749;NANOG:-0.0637804648499;HOXA9_MEIS1:-0.0673229839486;VSX1,2:-0.0740021941491;IKZF1:-0.124521553361;PRDM1:-0.155040955455;FOX{F1,F2,J1}:-0.192544245967;PAX1,9:-0.247331391485;MYB:-0.248420100651;SMAD1..7,9:-0.351468541445;BPTF:-0.485483116838;TAL1_TCF{3,4,12}:-0.504015233848;GATA4:-0.541670450417;SPZ1:-0.543914764868;POU2F1..3:-0.556445425214;TFCP2:-0.62041605585;SOX2:-0.637678912146;IKZF2:-0.646286281023;EGR1..3:-0.650360042523;OCT4_SOX2{dimer}:-0.651714146448;RFX1:-0.667530554048;ALX1:-0.701986943786;ESR1:-0.702305754454;RORA:-0.717085254571;FOXM1:-0.720459322967;RXR{A,B,G}:-0.7408856019;MZF1:-0.884877899508;NR3C1:-0.903109268723;ZNF238:-0.911223517263;POU5F1:-0.9220143359;REST:-0.955372809262;TEF:-0.956891224557;PAX6:-1.01268772082;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.08641823173;PRRX1,2:-1.09565679651;HOX{A6,A7,B6,B7}:-1.10321289638;NHLH1,2:-1.1130685305;HNF4A_NR2F1,2:-1.17669786013;DBP:-1.1820967348;TFAP4:-1.30099449882;GATA6:-1.31329431424;PAX4:-1.32652533767;HNF1A:-1.34054429842;PITX1..3:-1.35450354899;NKX3-2:-1.36033088742;SP1:-1.36734696146;MYFfamily:-1.41550026709;FOXA2:-1.49296104248;T:-1.49782392334;NKX2-1,4:-1.53249363383;GZF1:-1.53333921792;NKX2-3_NKX2-5:-1.53583716646;MYBL2:-1.54680819866;MED-1{core}:-1.57461313773;ELK1,4_GABP{A,B1}:-1.64022437706;E2F1..5:-1.65844582205;MAZ:-1.67385863921;FOXD3:-1.68481792687;NKX3-1:-1.69357588298;SOX5:-1.69667639246;MTE{core}:-1.70761806418;PATZ1:-1.71974157644;FOXP1:-1.74753763033;FOXL1:-1.75107963456;BREu{core}:-1.75668355864;ZBTB6:-1.76596853366;ZFP161:-1.78561704767;GTF2A1,2:-1.83213723969;ZEB1:-1.83899788664;PBX1:-1.85057839815;TLX1..3_NFIC{dimer}:-1.864079678;TEAD1:-1.87403757887;NKX6-1,2:-1.88035947205;MTF1:-1.90169372163;TFAP2B:-1.90462713506;MYOD1:-1.91596758743;SOX{8,9,10}:-1.92372476803;NKX2-2,8:-1.93301225368;GTF2I:-1.94026561365;NFIX:-1.9436964971;TFDP1:-1.9467777022;NFY{A,B,C}:-1.96732226117;ZNF384:-1.9741130265;CUX2:-1.99954590224;TP53:-2.00023871472;bHLH_family:-2.0287643705;SNAI1..3:-2.05498146476;GFI1B:-2.09230535503;CRX:-2.1006812634;ZNF148:-2.11465644708;XCPE1{core}:-2.12179443406;RREB1:-2.1708848995;POU1F1:-2.20559867105;FOX{I1,J2}:-2.23430108284;GCM1,2:-2.23772564304;HOX{A4,D4}:-2.27839766419;KLF4:-2.28531811769;ADNP_IRX_SIX_ZHX:-2.36492436375;POU6F1:-2.4415709138;NR5A1,2:-2.44963770794;TFAP2{A,C}:-2.45325138394;ZIC1..3:-2.45648304246;HIC1:-2.50765496035;FOXQ1:-2.51884688272;AIRE:-2.5336462081;EBF1:-2.58618125974;TBX4,5:-2.59811245558;POU3F1..4:-2.6851618924;UFEwm:-2.70009674542;PAX5:-2.7235714827;LMO2:-2.74412163745;SOX17:-2.80132367263;NRF1:-2.81770113123;GFI1:-2.85381813876;YY1:-2.92227237643;CDC5L:-3.03996837192;EVI1:-3.04544475684;ONECUT1,2:-3.05086252764;TOPORS:-3.14312602983;HAND1,2:-3.15728499315;ARID5B:-3.19576223013;AR:-3.29502608571;ZNF423:-3.43113006672;ZNF143:-3.44537929126;LHX3,4:-3.57740578857;LEF1_TCF7_TCF7L1,2:-3.76420964446 | |top_motifs=STAT5{A,B}:6.4778905873;STAT2,4,6:6.18003354626;FOSL2:5.68475478136;NFE2:5.07418563657;NFE2L2:4.92608854988;IRF7:4.81004172826;FOS_FOS{B,L1}_JUN{B,D}:4.73581582326;STAT1,3:4.62069053389;BACH2:4.62043352693;CEBPA,B_DDIT3:4.47472844592;HLF:4.42770105917;IRF1,2:4.19418545682;PAX2:4.02341808358;SREBF1,2:3.93978759112;NFIL3:3.87857229212;SPIB:3.66939531573;NANOG{mouse}:3.46590544287;FOXP3:3.27679368413;EP300:3.18952935985;ETS1,2:3.18640964356;SPI1:3.17019994955;ATF5_CREB3:3.04396449788;ATF4:3.0131838366;ATF6:2.83404035249;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.75049993097;RUNX1..3:2.54821383184;CREB1:2.45593627345;NFKB1_REL_RELA:2.43689819303;DMAP1_NCOR{1,2}_SMARC:2.40266324466;NFE2L1:2.35154590997;JUN:2.34461682581;FOXN1:2.28708612509;HSF1,2:2.14592278594;ATF2:2.01978377796;NR1H4:2.01921598157;TGIF1:1.91632007638;ELF1,2,4:1.88756779092;NFATC1..3:1.83632871687;PAX8:1.69628302426;CDX1,2,4:1.69166229746;MAFB:1.66529876111;ALX4:1.43093483608;HIF1A:1.40958194676;XBP1:1.16504370257;ESRRA:1.00530842989;PPARG:1.00308625958;HOX{A5,B5}:0.896510947241;FOXO1,3,4:0.883670602934;PAX3,7:0.877027328195;HMGA1,2:0.847940571652;SRF:0.801737180141;HMX1:0.708658474131;NR6A1:0.703710720642;RBPJ:0.689122985042;TLX2:0.675675639561;PDX1:0.346761146536;RXRA_VDR{dimer}:0.237615033898;AHR_ARNT_ARNT2:0.215820079799;HBP1_HMGB_SSRP1_UBTF:0.215500583079;MEF2{A,B,C,D}:0.177118641754;FOX{D1,D2}:0.127888329344;RFX2..5_RFXANK_RFXAP:0.109526968289;TBP:0.0862365649116;EN1,2:0.0805365195745;ZBTB16:-0.00196934644258;HES1:-0.0189193879791;GLI1..3:-0.0451781266749;NANOG:-0.0637804648499;HOXA9_MEIS1:-0.0673229839486;VSX1,2:-0.0740021941491;IKZF1:-0.124521553361;PRDM1:-0.155040955455;FOX{F1,F2,J1}:-0.192544245967;PAX1,9:-0.247331391485;MYB:-0.248420100651;SMAD1..7,9:-0.351468541445;BPTF:-0.485483116838;TAL1_TCF{3,4,12}:-0.504015233848;GATA4:-0.541670450417;SPZ1:-0.543914764868;POU2F1..3:-0.556445425214;TFCP2:-0.62041605585;SOX2:-0.637678912146;IKZF2:-0.646286281023;EGR1..3:-0.650360042523;OCT4_SOX2{dimer}:-0.651714146448;RFX1:-0.667530554048;ALX1:-0.701986943786;ESR1:-0.702305754454;RORA:-0.717085254571;FOXM1:-0.720459322967;RXR{A,B,G}:-0.7408856019;MZF1:-0.884877899508;NR3C1:-0.903109268723;ZNF238:-0.911223517263;POU5F1:-0.9220143359;REST:-0.955372809262;TEF:-0.956891224557;PAX6:-1.01268772082;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.08641823173;PRRX1,2:-1.09565679651;HOX{A6,A7,B6,B7}:-1.10321289638;NHLH1,2:-1.1130685305;HNF4A_NR2F1,2:-1.17669786013;DBP:-1.1820967348;TFAP4:-1.30099449882;GATA6:-1.31329431424;PAX4:-1.32652533767;HNF1A:-1.34054429842;PITX1..3:-1.35450354899;NKX3-2:-1.36033088742;SP1:-1.36734696146;MYFfamily:-1.41550026709;FOXA2:-1.49296104248;T:-1.49782392334;NKX2-1,4:-1.53249363383;GZF1:-1.53333921792;NKX2-3_NKX2-5:-1.53583716646;MYBL2:-1.54680819866;MED-1{core}:-1.57461313773;ELK1,4_GABP{A,B1}:-1.64022437706;E2F1..5:-1.65844582205;MAZ:-1.67385863921;FOXD3:-1.68481792687;NKX3-1:-1.69357588298;SOX5:-1.69667639246;MTE{core}:-1.70761806418;PATZ1:-1.71974157644;FOXP1:-1.74753763033;FOXL1:-1.75107963456;BREu{core}:-1.75668355864;ZBTB6:-1.76596853366;ZFP161:-1.78561704767;GTF2A1,2:-1.83213723969;ZEB1:-1.83899788664;PBX1:-1.85057839815;TLX1..3_NFIC{dimer}:-1.864079678;TEAD1:-1.87403757887;NKX6-1,2:-1.88035947205;MTF1:-1.90169372163;TFAP2B:-1.90462713506;MYOD1:-1.91596758743;SOX{8,9,10}:-1.92372476803;NKX2-2,8:-1.93301225368;GTF2I:-1.94026561365;NFIX:-1.9436964971;TFDP1:-1.9467777022;NFY{A,B,C}:-1.96732226117;ZNF384:-1.9741130265;CUX2:-1.99954590224;TP53:-2.00023871472;bHLH_family:-2.0287643705;SNAI1..3:-2.05498146476;GFI1B:-2.09230535503;CRX:-2.1006812634;ZNF148:-2.11465644708;XCPE1{core}:-2.12179443406;RREB1:-2.1708848995;POU1F1:-2.20559867105;FOX{I1,J2}:-2.23430108284;GCM1,2:-2.23772564304;HOX{A4,D4}:-2.27839766419;KLF4:-2.28531811769;ADNP_IRX_SIX_ZHX:-2.36492436375;POU6F1:-2.4415709138;NR5A1,2:-2.44963770794;TFAP2{A,C}:-2.45325138394;ZIC1..3:-2.45648304246;HIC1:-2.50765496035;FOXQ1:-2.51884688272;AIRE:-2.5336462081;EBF1:-2.58618125974;TBX4,5:-2.59811245558;POU3F1..4:-2.6851618924;UFEwm:-2.70009674542;PAX5:-2.7235714827;LMO2:-2.74412163745;SOX17:-2.80132367263;NRF1:-2.81770113123;GFI1:-2.85381813876;YY1:-2.92227237643;CDC5L:-3.03996837192;EVI1:-3.04544475684;ONECUT1,2:-3.05086252764;TOPORS:-3.14312602983;HAND1,2:-3.15728499315;ARID5B:-3.19576223013;AR:-3.29502608571;ZNF423:-3.43113006672;ZNF143:-3.44537929126;LHX3,4:-3.57740578857;LEF1_TCF7_TCF7L1,2:-3.76420964446 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11882-125D1;search_select_hide=table117:FF:11882-125D1 | |||
}} | }} |
Latest revision as of 18:26, 4 June 2020
Name: | CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor3 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13544 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13544
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13544
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0925 |
10 | 10 | 0.0203 |
100 | 100 | 0.903 |
101 | 101 | 0.753 |
102 | 102 | 0.96 |
103 | 103 | 0.345 |
104 | 104 | 0.53 |
105 | 105 | 0.152 |
106 | 106 | 0.0016 |
107 | 107 | 0.381 |
108 | 108 | 0.7 |
109 | 109 | 0.225 |
11 | 11 | 0.199 |
110 | 110 | 0.131 |
111 | 111 | 0.073 |
112 | 112 | 0.363 |
113 | 113 | 0.591 |
114 | 114 | 0.0244 |
115 | 115 | 0.197 |
116 | 116 | 0.927 |
117 | 117 | 0.0687 |
118 | 118 | 0.204 |
119 | 119 | 0.181 |
12 | 12 | 0.293 |
120 | 120 | 0.481 |
121 | 121 | 0.408 |
122 | 122 | 0.546 |
123 | 123 | 0.518 |
124 | 124 | 0.868 |
125 | 125 | 0.47 |
126 | 126 | 0.213 |
127 | 127 | 0.42 |
128 | 128 | 0.0609 |
129 | 129 | 0.458 |
13 | 13 | 0.0766 |
130 | 130 | 0.268 |
131 | 131 | 0.988 |
132 | 132 | 0.0496 |
133 | 133 | 0.803 |
134 | 134 | 0.734 |
135 | 135 | 0.522 |
136 | 136 | 0.993 |
137 | 137 | 0.013 |
138 | 138 | 0.306 |
139 | 139 | 0.0861 |
14 | 14 | 0.491 |
140 | 140 | 0.498 |
141 | 141 | 0.26 |
142 | 142 | 0.0663 |
143 | 143 | 0.0323 |
144 | 144 | 0.724 |
145 | 145 | 0.414 |
146 | 146 | 0.737 |
147 | 147 | 0.512 |
148 | 148 | 0.0261 |
149 | 149 | 0.884 |
15 | 15 | 0.161 |
150 | 150 | 0.419 |
151 | 151 | 0.381 |
152 | 152 | 0.292 |
153 | 153 | 0.899 |
154 | 154 | 0.609 |
155 | 155 | 0.816 |
156 | 156 | 0.39 |
157 | 157 | 0.753 |
158 | 158 | 0.0364 |
159 | 159 | 0.168 |
16 | 16 | 0.358 |
160 | 160 | 0.511 |
161 | 161 | 0.527 |
162 | 162 | 0.159 |
163 | 163 | 0.161 |
164 | 164 | 0.15 |
165 | 165 | 0.195 |
166 | 166 | 0.523 |
167 | 167 | 0.156 |
168 | 168 | 0.165 |
169 | 169 | 0.0121 |
17 | 17 | 0.324 |
18 | 18 | 0.187 |
19 | 19 | 0.491 |
2 | 2 | 0.511 |
20 | 20 | 0.243 |
21 | 21 | 0.655 |
22 | 22 | 0.287 |
23 | 23 | 0.0597 |
24 | 24 | 0.293 |
25 | 25 | 0.329 |
26 | 26 | 0.0716 |
27 | 27 | 0.651 |
28 | 28 | 0.448 |
29 | 29 | 0.192 |
3 | 3 | 0.194 |
30 | 30 | 0.509 |
31 | 31 | 0.821 |
32 | 32 | 0.507 |
33 | 33 | 0.232 |
34 | 34 | 0.716 |
35 | 35 | 0.198 |
36 | 36 | 0.0808 |
37 | 37 | 0.0699 |
38 | 38 | 0.443 |
39 | 39 | 0.971 |
4 | 4 | 0.845 |
40 | 40 | 0.206 |
41 | 41 | 0.0121 |
42 | 42 | 0.429 |
43 | 43 | 0.0314 |
44 | 44 | 0.769 |
45 | 45 | 0.87 |
46 | 46 | 0.212 |
47 | 47 | 0.609 |
48 | 48 | 0.535 |
49 | 49 | 0.171 |
5 | 5 | 0.267 |
50 | 50 | 0.891 |
51 | 51 | 0.503 |
52 | 52 | 0.481 |
53 | 53 | 0.605 |
54 | 54 | 0.427 |
55 | 55 | 0.71 |
56 | 56 | 0.764 |
57 | 57 | 0.946 |
58 | 58 | 0.163 |
59 | 59 | 0.375 |
6 | 6 | 0.837 |
60 | 60 | 0.0696 |
61 | 61 | 0.782 |
62 | 62 | 0.0796 |
63 | 63 | 0.647 |
64 | 64 | 0.434 |
65 | 65 | 0.298 |
66 | 66 | 0.373 |
67 | 67 | 0.56 |
68 | 68 | 0.937 |
69 | 69 | 0.452 |
7 | 7 | 0.245 |
70 | 70 | 0.0538 |
71 | 71 | 0.0307 |
72 | 72 | 0.171 |
73 | 73 | 0.168 |
74 | 74 | 0.0875 |
75 | 75 | 0.116 |
76 | 76 | 0.229 |
77 | 77 | 0.697 |
78 | 78 | 0.114 |
79 | 79 | 0.733 |
8 | 8 | 0.504 |
80 | 80 | 0.151 |
81 | 81 | 0.408 |
82 | 82 | 0.29 |
83 | 83 | 0.00571 |
84 | 84 | 0.42 |
85 | 85 | 0.0405 |
86 | 86 | 0.0582 |
87 | 87 | 0.493 |
88 | 88 | 0.587 |
89 | 89 | 0.232 |
9 | 9 | 0.452 |
90 | 90 | 0.101 |
91 | 91 | 0.312 |
92 | 92 | 0.317 |
93 | 93 | 0.244 |
94 | 94 | 0.0739 |
95 | 95 | 0.337 |
96 | 96 | 0.619 |
97 | 97 | 0.714 |
98 | 98 | 0.194 |
99 | 99 | 0.0282 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13544
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011444 CD14-positive monocytes - treated with Trehalose dimycolate (TDM) sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000631 (trehalose dimycolate (TDM) treatment sample)
0011444 (CD14-positive monocytes - treated with Trehalose dimycolate (TDM) sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)