FF:11474-119C7: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00004933 | |DRA_sample_Accession=CAGE@SAMD00004933 | ||
|accession_numbers=CAGE;DRX008098;DRR008970;DRZ000395;DRZ001780 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004933 | ||
|accession_numbers=CAGE;DRX008098;DRR008970;DRZ000395;DRZ001780;DRZ011745;DRZ013130 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037234;DRR041600;DRZ007242 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0003688,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0004457,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004923,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002323,UBERON:0000042,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0002417,UBERON:0002358,UBERON:0000916,UBERON:0003684,UBERON:0001178 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0003688,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0004457,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004923,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002323,UBERON:0000042,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0002417,UBERON:0002358,UBERON:0000916,UBERON:0003684,UBERON:0001178 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000325,CL:0000255,CL:0000136,CL:0002615 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000325,CL:0000255,CL:0000136,CL:0002615 | ||
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|def= | |def= | ||
|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.12!130.10!TCF21;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.96!90.07!HOXC5;;chr4:174451370..174451387,-!p1@HAND2!1.83!67.05!HAND2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.60!39.03!ZBED1;;chr2:119605214..119605230,-!p1@EN1!1.59!38.03!EN1;;chr4:174450089..174450153,-!p2@HAND2!1.57!36.03!HAND2;;chr12:54402745..54402788,+!p1@HOXC8!1.48!29.02!HOXC8;;chr9:132427883..132427951,+!p2@PRRX2!1.46!28.02!PRRX2;;chr19:47523058..47523114,+!p1@NPAS1!1.43!26.02!NPAS1;;chr9:132427972..132428056,+!p1@PRRX2!1.41!32.02!PRRX2;;chrX:106960180..106960197,-!p2@TSC22D3!1.39!87.06!TSC22D3;;chr7:19157248..19157268,-!p1@TWIST1!1.39!64.05!TWIST1;;chr4:4861385..4861398,+!p1@MSX1!1.36!64.05!MSX1;;chr9:96717629..96717644,-!p1@BARX1!1.34!21.02!BARX1;;chr10:28034739..28034756,-!p1@MKX!1.34!21.02!MKX;;chr1:170632285..170632309,+!p1@PRRX1!1.33!23.02!PRRX1;;chr17:46682321..46682362,-!p1@HOXB6!1.30!19.01!HOXB6;;chr2:239756739..239756755,+!p2@TWIST2!1.29!31.02!TWIST2;;chr1:170633348..170633399,+!p2@PRRX1!1.27!24.02!PRRX1;;chr5:158526917..158526932,-!p1@EBF1!1.25!41.03!EBF1;;chr1:23885981..23886002,-!p1@ID3!1.24!2769.03!ID3;;chr16:31076332..31076388,-!p3@ZNF668!1.18!14.01!ZNF668;;chr6:19837592..19837621,+!p1@ID4!1.16!81.06!ID4;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.15!13.01!HOXC5;;chrX:106960285..106960299,-!p1@TSC22D3!1.14!341.25!TSC22D3;;chr2:239756671..239756732,+!p1@TWIST2!1.13!40.03!TWIST2;;chr11:46299539..46299620,+!p2@CREB3L1!1.13!21.02!CREB3L1;;chr2:119605056..119605071,-!p10@EN1!1.11!12.01!EN1;;chr3:126076242..126076257,-!p1@KLF15!1.09!14.01!KLF15;;chr12:54394309..54394336,+!p2@HOXC9!1.08!11.01!HOXC9;;chr7:27192185..27192209,-!p1@HOXA3!1.08!11.01!HOXA3;;chr10:114889016..114889037,+!p15@TCF7L2!1.04!10.01!TCF7L2;;chr11:113930425..113930471,+!p1@ZBTB16!1.03!14.01!ZBTB16;;chr19:33793430..33793447,-!p1@CEBPA!1.02!41.03!CEBPA;;chr11:12696071..12696086,+!p3@TEAD1!1.00!12.01!TEAD1;;chr10:114889045..114889074,+!p12@TCF7L2!1.00!9.01!TCF7L2;;chr10:119302232..119302265,+!p1@EMX2!1.00!9.01!EMX2;;chr12:54402790..54402805,+!p2@HOXC8!1.00!9.01!HOXC8;;chr7:1577899..1577943,+!p3@MAFK!1.00!9.01!MAFK;;chr5:92918919..92918942,+!p1@NR2F1!0.98!39.03!NR2F1;;chr5:72744594..72744609,-!p1@FOXD1!0.96!38.03!FOXD1;;chr7:150946015..150946070,-!p3@SMARCD3!0.96!18.01!SMARCD3;;chr10:114710244..114710257,+!p3@TCF7L2!0.95!22.02!TCF7L2;;chr1:170633262..170633285,+!p3@PRRX1!0.95!9.01!PRRX1;;chr10:119302508..119302559,+!p5@EMX2!0.95!8.01!EMX2;;chr5:2751762..2751784,-!p1@IRX2!0.95!8.01!IRX2;;chr6:1389989..1390019,+!p2@FOXF2!0.95!8.01!FOXF2;;chrX:106960249..106960260,-!p5@TSC22D3!0.93!12.01!TSC22D3;;chr1:170632959..170632987,+!p4@PRRX1!0.92!8.01!PRRX1;;chr8:49833948..49833973,-!p2@SNAI2!0.91!47.03!SNAI2;;chr9:77112244..77112262,+!p1@RORB!0.91!8.01!RORB;;chr6:144329384..144329405,-!p1@PLAGL1!0.90!85.06!PLAGL1;;chr7:19157043..19157088,-!p2@TWIST1!0.90!18.01!TWIST1;;chr15:57511609..57511651,+!p2@TCF12!0.90!12.01!TCF12;;chr14:62213758..62213774,+!p8@HIF1A!0.90!9.01!HIF1A;;chr12:54378923..54378966,+!p1@HOXC10!0.90!7.01!HOXC10;;chr12:54393880..54393962,+!p1@HOXC9!0.90!7.01!HOXC9;;chr12:54394416..54394467,+!p5@HOXC9!0.90!7.01!HOXC9;;chr19:46801639..46801699,+!p1@HIF3A!0.90!7.01!HIF3A;;chr16:1429010..1429038,-!p5@UNKL!0.90!7.01!UNKL;;chr4:174451350..174451363,-!p3@HAND2!0.90!7.01!HAND2;;chr11:113930291..113930339,+!p2@ZBTB16!0.88!11.01!ZBTB16;;chr20:30193083..30193098,+!p1@ID1!0.87!548.40!ID1;;chr11:47279504..47279563,+!p1@NR1H3!0.87!15.01!NR1H3;;chr15:42749722..42749739,-!p2@ZFP106!0.87!12.01!ZFP106;;chr17:46687959..46688007,-!p2@HOXB7!0.87!9.01!HOXB7;;chr14:75894714..75894733,+!p1@JDP2!0.86!186.14!JDP2;;chr13:41240717..41240735,-!p2@FOXO1!0.86!45.03!FOXO1;;chr8:99956662..99956684,+!p1@OSR2!0.86!10.01!OSR2;;chr16:31454084..31454115,-!p1@ZNF843!0.86!7.01!ZNF843;;chr17:1959369..1959388,+!p2@HIC1!0.85!17.01!HIC1;;chr12:80085061..80085119,-!p6@PAWR!0.85!10.01!PAWR;;chr16:54964740..54964789,+!p1@IRX5!0.85!9.01!IRX5;;chr17:46688334..46688385,-!p1@HOXB7!0.85!9.01!HOXB7;;chr14:95236440..95236465,-!p1@GSC!0.85!6.00!GSC;;chr10:119303078..119303169,+!p2@EMX2!0.85!6.00!EMX2;;chr10:28035133..28035148,-!p3@MKX!0.85!6.00!MKX;;chr11:113930401..113930422,+!p3@ZBTB16!0.85!6.00!ZBTB16;;chr12:54380404..54380433,+!p3@HOXC10!0.85!6.00!HOXC10;;chr12:54402729..54402743,+!p3@HOXC8!0.85!6.00!HOXC8;;chr2:175199697..175199706,+!p2@SP9!0.85!6.00!SP9;;chr2:85981107..85981120,+!p3@ATOH8!0.85!6.00!ATOH8;;chr3:141719209..141719215,-!p10@TFDP2!0.85!6.00!TFDP2;;chr8:93074803..93074845,-!p1@RUNX1T1!0.85!6.00!RUNX1T1;;chr1:170633194..170633205,+!p18@PRRX1!0.85!6.00!PRRX1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.84!451.33!TAX1BP3;;chr19:13134772..13134822,+!p2@NFIX!0.84!9.01!NFIX;;chr2:46612334..46612349,+!p6@EPAS1!0.84!8.01!EPAS1;;chr5:92919100..92919135,+!p3@NR2F1!0.82!7.01!NR2F1;;chr14:61116183..61116208,-!p1@SIX1!0.81!22.02!SIX1;;chr10:77161133..77161176,-!p3@ZNF503!0.80!12.01!ZNF503;;chr6:85474299..85474324,-!p1@TBX18!0.80!10.01!TBX18;;chr2:85980951..85981004,+!p1@ATOH8!0.80!9.01!ATOH8;;chr13:41240737..41240787,-!p1@FOXO1!0.79!67.05!FOXO1;;chr17:46675420..46675465,-!p3@HOXB6!0.79!6.00!HOXB6;;chr18:19749541..19749557,+!p1@GATA6!0.78!17.01!GATA6;;chrX:106960221..106960236,-!p3@TSC22D3!0.78!15.01!TSC22D3;;chr3:24536253..24536328,-!p1@THRB!0.78!10.01!THRB;;chr2:119604456..119604501,-!p2@EN1!0.78!5.00!EN1;;chr2:119605253..119605264,-!p5@EN1!0.78!5.00!EN1;;chr2:46612891..46612907,+!p10@EPAS1!0.78!5.00!EPAS1;;chr2:85981008..85981025,+!p7@ATOH8!0.78!5.00!ATOH8;;chr3:25470156..25470227,+!p2@RARB!0.78!5.00!RARB;;chr1:170632683..170632696,+!p12@PRRX1!0.78!5.00!PRRX1;;chr10:119302645..119302712,+!p3@EMX2!0.78!5.00!EMX2;;chr12:54410948..54410992,+!p3@HOXC5!0.78!5.00!HOXC5;;chr2:46602879..46602899,+!p8@EPAS1!0.77!6.00!EPAS1;;chr14:62213827..62213853,+!p6@HIF1A!0.76!7.01!HIF1A;;chr16:86544113..86544145,+!p1@FOXF1!0.76!6.00!FOXF1;;chr2:8822176..8822196,+!p1@ID2!0.73!698.51!ID2;;chr17:38498594..38498661,+!p2@RARA!0.73!16.01!RARA;;chr14:24837368..24837401,+!p1@NFATC4!0.73!11.01!NFATC4;;chr2:208031943..208031978,-!p5@KLF7!0.73!6.00!KLF7;;chr4:81118647..81118666,+!p1@PRDM8!0.73!6.00!PRDM8;;chr2:46524537..46524553,+!p1@EPAS1!0.72!471.35!EPAS1;;chr8:106330656..106330684,+!p1@ZFPM2!0.72!12.01!ZFPM2;;chr19:50432453..50432468,+!p1@ATF5!0.71!261.19!ATF5;;chr7:44143925..44143970,+!p1@AEBP1!0.71!105.08!AEBP1;;chr11:46299199..46299233,+!p1@CREB3L1!0.71!24.02!CREB3L1;;chr10:131762504..131762555,-!p1@EBF3!0.70!4.00!EBF3;;chr11:12696102..12696113,+!p5@TEAD1!0.70!4.00!TEAD1;;chr11:46333934..46333963,+!p5@CREB3L1!0.70!4.00!CREB3L1;;chr12:54422217..54422239,+!p3@HOXC6!0.70!4.00!HOXC6;;chr12:54447637..54447659,+!p4@HOXC4!0.70!4.00!HOXC4;;chr13:37494248..37494260,-!p3@SMAD9!0.70!4.00!SMAD9;;chr5:139492456..139492489,+!p7@PURA!0.70!4.00!PURA;;chr5:92919452..92919496,+!p11@NR2F1!0.70!4.00!NR2F1;;chr7:150945865..150945896,-!p4@SMARCD3!0.70!4.00!SMARCD3;;chr7:27205136..27205164,-!p1@HOXA9!0.70!4.00!HOXA9;;chr7:27213893..27213954,-!p1@HOXA10!0.70!4.00!HOXA10;;chr17:46659728..46659749,-!p3@HOXB3!0.70!4.00!HOXB3;;chr9:96717678..96717689,-!p2@BARX1!0.70!4.00!BARX1;;chr1:170633245..170633256,+!p14@PRRX1!0.70!4.00!PRRX1;;chr2:113994526..113994556,-!p3@PAX8!0.70!4.00!PAX8;;chr2:176994408..176994492,+!p1@HOXD8!0.70!4.00!HOXD8;;chr2:223163706..223163730,-!p1@PAX3!0.70!4.00!PAX3;;chr2:66662281..66662308,+!p1@MEIS1!0.69!15.01!MEIS1;;chr8:49833978..49833996,-!p1@SNAI2!0.68!89.07!SNAI2;;chr10:77161504..77161530,-!p1@ZNF503!0.68!58.04!ZNF503;;chr15:96873984..96873999,+!p3@NR2F2!0.68!32.02!NR2F2;;chr2:28618532..28618610,+!p4@FOSL2!0.68!7.01!FOSL2;;chr8:106330696..106330719,+!p2@ZFPM2!0.68!5.00!ZFPM2;;chr2:85980919..85980942,+!p4@ATOH8!0.67!4.00!ATOH8;;chr9:35732647..35732678,+!p2@CREB3!0.66!23.02!CREB3;;chr2:27357446..27357475,-!p2@PREB!0.66!14.01!PREB;;chr2:19558373..19558392,-!p1@OSR1!0.66!11.01!OSR1;;chr5:158526459..158526481,-!p2@EBF1!0.66!5.00!EBF1;;chr5:92918956..92918969,+!p4@NR2F1!0.66!4.00!NR2F1;;chr12:48298765..48298783,-!p2@VDR!0.65!8.01!VDR;;chr1:23696348..23696363,-!p4@ZNF436!0.65!4.00!ZNF436;;chr3:178789522..178789564,-!p2@ZMAT3!0.64!29.02!ZMAT3;;chr5:139487608..139487663,+!p3@PURA!0.64!8.01!PURA;;chr2:85981222..85981259,+!p2@ATOH8!0.64!6.00!ATOH8;;chr3:126076264..126076305,-!p2@KLF15!0.64!5.00!KLF15;;chr9:35732514..35732530,+!p5@CREB3!0.64!5.00!CREB3;;chr20:48807587..48807603,+!p16@CEBPB!0.64!4.00!CEBPB;;chr13:45151259..45151326,-!p2@TSC22D1!0.63!23.02!TSC22D1;;chr10:8096772..8096787,+!p2@GATA3!0.63!4.00!GATA3;;chr5:72743793..72743855,-!p4@FOXD1!0.63!4.00!FOXD1;;chr14:62162258..62162269,+!p2@HIF1A!0.62!36.03!HIF1A;;chr5:92918894..92918912,+!p2@NR2F1!0.62!12.01!NR2F1;;chr13:37494365..37494381,-!p1@SMAD9!0.62!6.00!SMAD9;;chr6:85473156..85473210,-!p2@TBX18!0.62!4.00!TBX18;;chr6:144289132..144289134,-!p3@PLAGL1!0.61!8.01!PLAGL1;;chr1:164528911..164528940,+!p7@PBX1!0.61!5.00!PBX1;;chr15:66994663..66994680,+!p1@SMAD6!0.60!8.01!SMAD6;;chr7:44143978..44143989,+!p2@AEBP1!0.60!6.00!AEBP1;;chr8:72756667..72756736,-!p2@MSC!0.60!5.00!MSC;;chr1:23694556..23694584,-!p6@ZNF436!0.60!4.00!ZNF436;;chr19:47910182..47910187,-!p3@MEIS3!0.60!3.00!MEIS3;;chr1:170632439..170632465,+!p11@PRRX1!0.60!3.00!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.60!3.00!PRRX1;;chr1:23886329..23886336,-!p3@ID3!0.60!3.00!ID3;;chr21:40033695..40033712,-!p6@ERG!0.60!3.00!ERG;;chr5:158527104..158527135,-!p4@EBF1!0.60!3.00!EBF1;;chr6:108977520..108977534,+!p7@FOXO3!0.60!3.00!FOXO3;;chr7:27196267..27196311,-!p1@HOXA7!0.60!3.00!HOXA7;;chr7:27205106..27205134,-!p2@HOXA9!0.60!3.00!HOXA9;;chr7:73038839..73038862,-!p1@MLXIPL!0.60!3.00!MLXIPL;;chr7:96654133..96654150,-!p1@DLX5!0.60!3.00!DLX5;;chr8:23564065..23564087,-!p1@NKX2-6!0.60!3.00!NKX2-6;;chr10:119301928..119301955,+!p7@EMX2!0.60!3.00!EMX2;;chr10:28032421..28032494,-!p2@MKX!0.60!3.00!MKX;;chr10:28035112..28035130,-!p5@MKX!0.60!3.00!MKX;;chr10:28035155..28035166,-!p8@MKX!0.60!3.00!MKX;;chr10:31610110..31610159,+!p2@ZEB1!0.60!3.00!ZEB1;;chr10:63853479..63853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| |expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.12!130.10!TCF21;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.96!90.07!HOXC5;;chr4:174451370..174451387,-!p1@HAND2!1.83!67.05!HAND2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.60!39.03!ZBED1;;chr2:119605214..119605230,-!p1@EN1!1.59!38.03!EN1;;chr4:174450089..174450153,-!p2@HAND2!1.57!36.03!HAND2;;chr12:54402745..54402788,+!p1@HOXC8!1.48!29.02!HOXC8;;chr9:132427883..132427951,+!p2@PRRX2!1.46!28.02!PRRX2;;chr19:47523058..47523114,+!p1@NPAS1!1.43!26.02!NPAS1;;chr9:132427972..132428056,+!p1@PRRX2!1.41!32.02!PRRX2;;chrX:106960180..106960197,-!p2@TSC22D3!1.39!87.06!TSC22D3;;chr7:19157248..19157268,-!p1@TWIST1!1.39!64.05!TWIST1;;chr4:4861385..4861398,+!p1@MSX1!1.36!64.05!MSX1;;chr9:96717629..96717644,-!p1@BARX1!1.34!21.02!BARX1;;chr10:28034739..28034756,-!p1@MKX!1.34!21.02!MKX;;chr1:170632285..170632309,+!p1@PRRX1!1.33!23.02!PRRX1;;chr17:46682321..46682362,-!p1@HOXB6!1.30!19.01!HOXB6;;chr2:239756739..239756755,+!p2@TWIST2!1.29!31.02!TWIST2;;chr1:170633348..170633399,+!p2@PRRX1!1.27!24.02!PRRX1;;chr5:158526917..158526932,-!p1@EBF1!1.25!41.03!EBF1;;chr1:23885981..23886002,-!p1@ID3!1.24!2769.03!ID3;;chr16:31076332..31076388,-!p3@ZNF668!1.18!14.01!ZNF668;;chr6:19837592..19837621,+!p1@ID4!1.16!81.06!ID4;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.15!13.01!HOXC5;;chrX:106960285..106960299,-!p1@TSC22D3!1.14!341.25!TSC22D3;;chr2:239756671..239756732,+!p1@TWIST2!1.13!40.03!TWIST2;;chr11:46299539..46299620,+!p2@CREB3L1!1.13!21.02!CREB3L1;;chr2:119605056..119605071,-!p10@EN1!1.11!12.01!EN1;;chr3:126076242..126076257,-!p1@KLF15!1.09!14.01!KLF15;;chr12:54394309..54394336,+!p2@HOXC9!1.08!11.01!HOXC9;;chr7:27192185..27192209,-!p1@HOXA3!1.08!11.01!HOXA3;;chr10:114889016..114889037,+!p15@TCF7L2!1.04!10.01!TCF7L2;;chr11:113930425..113930471,+!p1@ZBTB16!1.03!14.01!ZBTB16;;chr19:33793430..33793447,-!p1@CEBPA!1.02!41.03!CEBPA;;chr11:12696071..12696086,+!p3@TEAD1!1.00!12.01!TEAD1;;chr10:114889045..114889074,+!p12@TCF7L2!1.00!9.01!TCF7L2;;chr10:119302232..119302265,+!p1@EMX2!1.00!9.01!EMX2;;chr12:54402790..54402805,+!p2@HOXC8!1.00!9.01!HOXC8;;chr7:1577899..1577943,+!p3@MAFK!1.00!9.01!MAFK;;chr5:92918919..92918942,+!p1@NR2F1!0.98!39.03!NR2F1;;chr5:72744594..72744609,-!p1@FOXD1!0.96!38.03!FOXD1;;chr7:150946015..150946070,-!p3@SMARCD3!0.96!18.01!SMARCD3;;chr10:114710244..114710257,+!p3@TCF7L2!0.95!22.02!TCF7L2;;chr1:170633262..170633285,+!p3@PRRX1!0.95!9.01!PRRX1;;chr10:119302508..119302559,+!p5@EMX2!0.95!8.01!EMX2;;chr5:2751762..2751784,-!p1@IRX2!0.95!8.01!IRX2;;chr6:1389989..1390019,+!p2@FOXF2!0.95!8.01!FOXF2;;chrX:106960249..106960260,-!p5@TSC22D3!0.93!12.01!TSC22D3;;chr1:170632959..170632987,+!p4@PRRX1!0.92!8.01!PRRX1;;chr8:49833948..49833973,-!p2@SNAI2!0.91!47.03!SNAI2;;chr9:77112244..77112262,+!p1@RORB!0.91!8.01!RORB;;chr6:144329384..144329405,-!p1@PLAGL1!0.90!85.06!PLAGL1;;chr7:19157043..19157088,-!p2@TWIST1!0.90!18.01!TWIST1;;chr15:57511609..57511651,+!p2@TCF12!0.90!12.01!TCF12;;chr14:62213758..62213774,+!p8@HIF1A!0.90!9.01!HIF1A;;chr12:54378923..54378966,+!p1@HOXC10!0.90!7.01!HOXC10;;chr12:54393880..54393962,+!p1@HOXC9!0.90!7.01!HOXC9;;chr12:54394416..54394467,+!p5@HOXC9!0.90!7.01!HOXC9;;chr19:46801639..46801699,+!p1@HIF3A!0.90!7.01!HIF3A;;chr16:1429010..1429038,-!p5@UNKL!0.90!7.01!UNKL;;chr4:174451350..174451363,-!p3@HAND2!0.90!7.01!HAND2;;chr11:113930291..113930339,+!p2@ZBTB16!0.88!11.01!ZBTB16;;chr20:30193083..30193098,+!p1@ID1!0.87!548.40!ID1;;chr11:47279504..47279563,+!p1@NR1H3!0.87!15.01!NR1H3;;chr15:42749722..42749739,-!p2@ZFP106!0.87!12.01!ZFP106;;chr17:46687959..46688007,-!p2@HOXB7!0.87!9.01!HOXB7;;chr14:75894714..75894733,+!p1@JDP2!0.86!186.14!JDP2;;chr13:41240717..41240735,-!p2@FOXO1!0.86!45.03!FOXO1;;chr8:99956662..99956684,+!p1@OSR2!0.86!10.01!OSR2;;chr16:31454084..31454115,-!p1@ZNF843!0.86!7.01!ZNF843;;chr17:1959369..1959388,+!p2@HIC1!0.85!17.01!HIC1;;chr12:80085061..80085119,-!p6@PAWR!0.85!10.01!PAWR;;chr16:54964740..54964789,+!p1@IRX5!0.85!9.01!IRX5;;chr17:46688334..46688385,-!p1@HOXB7!0.85!9.01!HOXB7;;chr14:95236440..95236465,-!p1@GSC!0.85!6.00!GSC;;chr10:119303078..119303169,+!p2@EMX2!0.85!6.00!EMX2;;chr10:28035133..28035148,-!p3@MKX!0.85!6.00!MKX;;chr11:113930401..113930422,+!p3@ZBTB16!0.85!6.00!ZBTB16;;chr12:54380404..54380433,+!p3@HOXC10!0.85!6.00!HOXC10;;chr12:54402729..54402743,+!p3@HOXC8!0.85!6.00!HOXC8;;chr2:175199697..175199706,+!p2@SP9!0.85!6.00!SP9;;chr2:85981107..85981120,+!p3@ATOH8!0.85!6.00!ATOH8;;chr3:141719209..141719215,-!p10@TFDP2!0.85!6.00!TFDP2;;chr8:93074803..93074845,-!p1@RUNX1T1!0.85!6.00!RUNX1T1;;chr1:170633194..170633205,+!p18@PRRX1!0.85!6.00!PRRX1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.84!451.33!TAX1BP3;;chr19:13134772..13134822,+!p2@NFIX!0.84!9.01!NFIX;;chr2:46612334..46612349,+!p6@EPAS1!0.84!8.01!EPAS1;;chr5:92919100..92919135,+!p3@NR2F1!0.82!7.01!NR2F1;;chr14:61116183..61116208,-!p1@SIX1!0.81!22.02!SIX1;;chr10:77161133..77161176,-!p3@ZNF503!0.80!12.01!ZNF503;;chr6:85474299..85474324,-!p1@TBX18!0.80!10.01!TBX18;;chr2:85980951..85981004,+!p1@ATOH8!0.80!9.01!ATOH8;;chr13:41240737..41240787,-!p1@FOXO1!0.79!67.05!FOXO1;;chr17:46675420..46675465,-!p3@HOXB6!0.79!6.00!HOXB6;;chr18:19749541..19749557,+!p1@GATA6!0.78!17.01!GATA6;;chrX:106960221..106960236,-!p3@TSC22D3!0.78!15.01!TSC22D3;;chr3:24536253..24536328,-!p1@THRB!0.78!10.01!THRB;;chr2:119604456..119604501,-!p2@EN1!0.78!5.00!EN1;;chr2:119605253..119605264,-!p5@EN1!0.78!5.00!EN1;;chr2:46612891..46612907,+!p10@EPAS1!0.78!5.00!EPAS1;;chr2:85981008..85981025,+!p7@ATOH8!0.78!5.00!ATOH8;;chr3:25470156..25470227,+!p2@RARB!0.78!5.00!RARB;;chr1:170632683..170632696,+!p12@PRRX1!0.78!5.00!PRRX1;;chr10:119302645..119302712,+!p3@EMX2!0.78!5.00!EMX2;;chr12:54410948..54410992,+!p3@HOXC5!0.78!5.00!HOXC5;;chr2:46602879..46602899,+!p8@EPAS1!0.77!6.00!EPAS1;;chr14:62213827..62213853,+!p6@HIF1A!0.76!7.01!HIF1A;;chr16:86544113..86544145,+!p1@FOXF1!0.76!6.00!FOXF1;;chr2:8822176..8822196,+!p1@ID2!0.73!698.51!ID2;;chr17:38498594..38498661,+!p2@RARA!0.73!16.01!RARA;;chr14:24837368..24837401,+!p1@NFATC4!0.73!11.01!NFATC4;;chr2:208031943..208031978,-!p5@KLF7!0.73!6.00!KLF7;;chr4:81118647..81118666,+!p1@PRDM8!0.73!6.00!PRDM8;;chr2:46524537..46524553,+!p1@EPAS1!0.72!471.35!EPAS1;;chr8:106330656..106330684,+!p1@ZFPM2!0.72!12.01!ZFPM2;;chr19:50432453..50432468,+!p1@ATF5!0.71!261.19!ATF5;;chr7:44143925..44143970,+!p1@AEBP1!0.71!105.08!AEBP1;;chr11:46299199..46299233,+!p1@CREB3L1!0.71!24.02!CREB3L1;;chr10:131762504..131762555,-!p1@EBF3!0.70!4.00!EBF3;;chr11:12696102..12696113,+!p5@TEAD1!0.70!4.00!TEAD1;;chr11:46333934..46333963,+!p5@CREB3L1!0.70!4.00!CREB3L1;;chr12:54422217..54422239,+!p3@HOXC6!0.70!4.00!HOXC6;;chr12:54447637..54447659,+!p4@HOXC4!0.70!4.00!HOXC4;;chr13:37494248..37494260,-!p3@SMAD9!0.70!4.00!SMAD9;;chr5:139492456..139492489,+!p7@PURA!0.70!4.00!PURA;;chr5:92919452..92919496,+!p11@NR2F1!0.70!4.00!NR2F1;;chr7:150945865..150945896,-!p4@SMARCD3!0.70!4.00!SMARCD3;;chr7:27205136..27205164,-!p1@HOXA9!0.70!4.00!HOXA9;;chr7:27213893..27213954,-!p1@HOXA10!0.70!4.00!HOXA10;;chr17:46659728..46659749,-!p3@HOXB3!0.70!4.00!HOXB3;;chr9:96717678..96717689,-!p2@BARX1!0.70!4.00!BARX1;;chr1:170633245..170633256,+!p14@PRRX1!0.70!4.00!PRRX1;;chr2:113994526..113994556,-!p3@PAX8!0.70!4.00!PAX8;;chr2:176994408..176994492,+!p1@HOXD8!0.70!4.00!HOXD8;;chr2:223163706..223163730,-!p1@PAX3!0.70!4.00!PAX3;;chr2:66662281..66662308,+!p1@MEIS1!0.69!15.01!MEIS1;;chr8:49833978..49833996,-!p1@SNAI2!0.68!89.07!SNAI2;;chr10:77161504..77161530,-!p1@ZNF503!0.68!58.04!ZNF503;;chr15:96873984..96873999,+!p3@NR2F2!0.68!32.02!NR2F2;;chr2:28618532..28618610,+!p4@FOSL2!0.68!7.01!FOSL2;;chr8:106330696..106330719,+!p2@ZFPM2!0.68!5.00!ZFPM2;;chr2:85980919..85980942,+!p4@ATOH8!0.67!4.00!ATOH8;;chr9:35732647..35732678,+!p2@CREB3!0.66!23.02!CREB3;;chr2:27357446..27357475,-!p2@PREB!0.66!14.01!PREB;;chr2:19558373..19558392,-!p1@OSR1!0.66!11.01!OSR1;;chr5:158526459..158526481,-!p2@EBF1!0.66!5.00!EBF1;;chr5:92918956..92918969,+!p4@NR2F1!0.66!4.00!NR2F1;;chr12:48298765..48298783,-!p2@VDR!0.65!8.01!VDR;;chr1:23696348..23696363,-!p4@ZNF436!0.65!4.00!ZNF436;;chr3:178789522..178789564,-!p2@ZMAT3!0.64!29.02!ZMAT3;;chr5:139487608..139487663,+!p3@PURA!0.64!8.01!PURA;;chr2:85981222..85981259,+!p2@ATOH8!0.64!6.00!ATOH8;;chr3:126076264..126076305,-!p2@KLF15!0.64!5.00!KLF15;;chr9:35732514..35732530,+!p5@CREB3!0.64!5.00!CREB3;;chr20:48807587..48807603,+!p16@CEBPB!0.64!4.00!CEBPB;;chr13:45151259..45151326,-!p2@TSC22D1!0.63!23.02!TSC22D1;;chr10:8096772..8096787,+!p2@GATA3!0.63!4.00!GATA3;;chr5:72743793..72743855,-!p4@FOXD1!0.63!4.00!FOXD1;;chr14:62162258..62162269,+!p2@HIF1A!0.62!36.03!HIF1A;;chr5:92918894..92918912,+!p2@NR2F1!0.62!12.01!NR2F1;;chr13:37494365..37494381,-!p1@SMAD9!0.62!6.00!SMAD9;;chr6:85473156..85473210,-!p2@TBX18!0.62!4.00!TBX18;;chr6:144289132..144289134,-!p3@PLAGL1!0.61!8.01!PLAGL1;;chr1:164528911..164528940,+!p7@PBX1!0.61!5.00!PBX1;;chr15:66994663..66994680,+!p1@SMAD6!0.60!8.01!SMAD6;;chr7:44143978..44143989,+!p2@AEBP1!0.60!6.00!AEBP1;;chr8:72756667..72756736,-!p2@MSC!0.60!5.00!MSC;;chr1:23694556..23694584,-!p6@ZNF436!0.60!4.00!ZNF436;;chr19:47910182..47910187,-!p3@MEIS3!0.60!3.00!MEIS3;;chr1:170632439..170632465,+!p11@PRRX1!0.60!3.00!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.60!3.00!PRRX1;;chr1:23886329..23886336,-!p3@ID3!0.60!3.00!ID3;;chr21:40033695..40033712,-!p6@ERG!0.60!3.00!ERG;;chr5:158527104..158527135,-!p4@EBF1!0.60!3.00!EBF1;;chr6:108977520..108977534,+!p7@FOXO3!0.60!3.00!FOXO3;;chr7:27196267..27196311,-!p1@HOXA7!0.60!3.00!HOXA7;;chr7:27205106..27205134,-!p2@HOXA9!0.60!3.00!HOXA9;;chr7:73038839..73038862,-!p1@MLXIPL!0.60!3.00!MLXIPL;;chr7:96654133..96654150,-!p1@DLX5!0.60!3.00!DLX5;;chr8:23564065..23564087,-!p1@NKX2-6!0.60!3.00!NKX2-6;;chr10:119301928..119301955,+!p7@EMX2!0.60!3.00!EMX2;;chr10:28032421..28032494,-!p2@MKX!0.60!3.00!MKX;;chr10:28035112..28035130,-!p5@MKX!0.60!3.00!MKX;;chr10:28035155..28035166,-!p8@MKX!0.60!3.00!MKX;;chr10:31610110..31610159,+!p2@ZEB1!0.60!3.00!ZEB1;;chr10:63853479..63853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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000136;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002615;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001013;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001178;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002323 | |||
|ffid_belonging_in_development=CL:0000134 | |ffid_belonging_in_development=CL:0000134 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 41: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520omental%252c%2520donor2.CNhs12067.11474-119C7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520omental%252c%2520donor2.CNhs12067.11474-119C7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520omental%252c%2520donor2.CNhs12067.11474-119C7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520omental%252c%2520donor2.CNhs12067.11474-119C7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520omental%252c%2520donor2.CNhs12067.11474-119C7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11474-119C7 | |id=FF:11474-119C7 | ||
|is_a=EFO:0002091;;FF:0000039 | |is_a=EFO:0002091;;FF:0000039 | ||
Line 46: | Line 54: | ||
|library_id=CNhs12067 | |library_id=CNhs12067 | ||
|library_id_phase_based=2:CNhs12067 | |library_id_phase_based=2:CNhs12067 | ||
|name= | |microRNAs= | ||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11474 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.GGCTAC.11474 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11474 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.GGCTAC.11474 | |||
|name=Adipocyte - omental, donor2 | |||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
|part_of= | |part_of= | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage= | |profile_hcage=CNhs12067,LSID838,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq= | |profile_srnaseq=SRhi10014,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 67: | Line 82: | ||
|rna_tube_id=119C7 | |rna_tube_id=119C7 | ||
|rna_weight_ug=13.7 | |rna_weight_ug=13.7 | ||
|rnaseq_library_id=SRhi10014.GGCTAC | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |sample_category=primary cells | ||
Line 90: | Line 106: | ||
|top_motifs=NKX2-2,8:3.2301192182;UFEwm:2.47125669882;NKX3-1:2.29281628889;ALX4:2.28453635403;PAX1,9:1.97971881369;FOXL1:1.92894858496;ESR1:1.92258024419;HES1:1.88005432967;EVI1:1.82649011701;HMX1:1.81243663521;IKZF1:1.79541941908;ZNF238:1.74057131838;NKX2-1,4:1.73377249797;XBP1:1.72565575697;GZF1:1.71006256547;GLI1..3:1.70149216543;TAL1_TCF{3,4,12}:1.63034818448;GCM1,2:1.60988320237;SRF:1.59488338875;ATF6:1.51671177817;RXRA_VDR{dimer}:1.43812249038;TFAP4:1.37323447113;HOX{A6,A7,B6,B7}:1.25829313772;TEAD1:1.24559077478;NKX3-2:1.24127813593;NR6A1:1.20721249354;EBF1:1.19095575064;RXR{A,B,G}:1.17318434566;AR:1.16003667088;TP53:1.15260411509;NFE2L1:1.11520742896;NANOG{mouse}:1.11472466016;HMGA1,2:1.08521174027;HOX{A4,D4}:1.08153780501;KLF4:1.06941837384;ZNF423:1.06677612198;NFATC1..3:1.03982125573;MYBL2:1.038786496;NR3C1:1.02907015766;TBP:1.01162954665;EN1,2:1.00002538708;NR1H4:0.987631212571;TEF:0.940204835647;HOX{A5,B5}:0.938913999958;GTF2A1,2:0.915859409223;TLX1..3_NFIC{dimer}:0.912049720221;SMAD1..7,9:0.899480903865;MTE{core}:0.88730779224;ARID5B:0.844653861116;TFCP2:0.835623592685;MAFB:0.81122102152;TFAP2{A,C}:0.755716067447;MAZ:0.664609866667;GTF2I:0.639945625284;GATA4:0.616923420354;MTF1:0.552918862852;FOXO1,3,4:0.532186373518;HIF1A:0.523517783724;DBP:0.502103973737;PAX5:0.498530128578;FOX{I1,J2}:0.486322146071;LHX3,4:0.464240375661;ZNF148:0.449477524255;SPZ1:0.427586763352;TBX4,5:0.427503828959;GFI1B:0.425623885501;TFAP2B:0.41661006538;HAND1,2:0.376182882538;ESRRA:0.307827690427;NHLH1,2:0.298293907237;FOXA2:0.281383657393;ZBTB6:0.26988909364;STAT2,4,6:0.264285708143;POU6F1:0.260486425854;MEF2{A,B,C,D}:0.245144835921;ZIC1..3:0.233942826141;HIC1:0.233658213267;ONECUT1,2:0.225231559049;PPARG:0.197414633576;HSF1,2:0.171726207583;REST:0.143001969404;PATZ1:0.13311268862;HLF:0.12656095738;MYB:0.115487897032;PAX6:0.100294700139;EP300:0.100252048896;SOX5:0.0975963053473;FOXP3:0.0958244718164;NFE2L2:0.0918525946255;XCPE1{core}:0.0877061599722;NFIL3:0.0853344185445;TGIF1:0.0554774993733;HOXA9_MEIS1:0.00725389232402;PRDM1:-0.0491488742379;SOX17:-0.057223269637;bHLH_family:-0.0596934489273;MYFfamily:-0.090957258266;HNF4A_NR2F1,2:-0.125075624382;NR5A1,2:-0.132912532512;MZF1:-0.14340898198;FOX{F1,F2,J1}:-0.211897398613;ALX1:-0.230349390971;CDC5L:-0.244316803536;PAX3,7:-0.244477338705;BACH2:-0.255266654529;FOX{D1,D2}:-0.282756508468;HNF1A:-0.285930514067;STAT1,3:-0.299172303821;PAX2:-0.303561395456;CEBPA,B_DDIT3:-0.342856393981;NFIX:-0.3454012752;AIRE:-0.387843315267;MED-1{core}:-0.394749018019;T:-0.397378308002;RREB1:-0.408529206209;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.410411926135;NFE2:-0.452661491743;DMAP1_NCOR{1,2}_SMARC:-0.472234123511;IKZF2:-0.473742413;OCT4_SOX2{dimer}:-0.47737610898;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.479494087258;FOSL2:-0.500807918145;GFI1:-0.532425406018;STAT5{A,B}:-0.537950083036;NFKB1_REL_RELA:-0.539616156417;FOS_FOS{B,L1}_JUN{B,D}:-0.541739464284;SOX2:-0.544720366592;SREBF1,2:-0.549471512314;NKX2-3_NKX2-5:-0.565297540317;SP1:-0.581200409906;LEF1_TCF7_TCF7L1,2:-0.590585314645;SPI1:-0.599277735609;SNAI1..3:-0.631521448214;ADNP_IRX_SIX_ZHX:-0.637878691491;IRF1,2:-0.642061033619;FOXM1:-0.645419682423;ZNF143:-0.672877227991;TOPORS:-0.682198414681;MYOD1:-0.705336205478;JUN:-0.709241591912;ZFP161:-0.736730265715;ETS1,2:-0.756521540827;ZNF384:-0.756994488135;POU3F1..4:-0.763697883662;EGR1..3:-0.769490489599;TLX2:-0.788417678021;RFX1:-0.796272715871;ATF5_CREB3:-0.796396088179;NRF1:-0.798951885794;RUNX1..3:-0.803186097634;CRX:-0.81378639411;ELF1,2,4:-0.845034437181;LMO2:-0.846038625692;ZEB1:-0.851005979146;RORA:-0.856526676164;PAX4:-0.861194335568;FOXD3:-0.873233772678;ELK1,4_GABP{A,B1}:-0.886715376402;YY1:-0.892077445757;SPIB:-0.898079390664;ATF4:-0.898106706384;RFX2..5_RFXANK_RFXAP:-0.905529990845;GATA6:-0.921489295961;PDX1:-0.923127597747;CDX1,2,4:-0.94208842791;ZBTB16:-0.951089225689;AHR_ARNT_ARNT2:-0.959517931002;ATF2:-0.967454178577;POU1F1:-1.01780390635;CREB1:-1.05452514246;HBP1_HMGB_SSRP1_UBTF:-1.09670078904;BREu{core}:-1.09774685626;IRF7:-1.10601158864;FOXP1:-1.13283211795;PRRX1,2:-1.1582490591;POU5F1:-1.19056766905;NFY{A,B,C}:-1.22482878253;TFDP1:-1.23689695617;CUX2:-1.31420955623;PBX1:-1.32391824839;SOX{8,9,10}:-1.34716075131;PITX1..3:-1.35197380026;NKX6-1,2:-1.39554522161;PAX8:-1.40696899989;NANOG:-1.43054407564;E2F1..5:-1.49051829055;FOXQ1:-1.52897617116;VSX1,2:-1.54170653305;BPTF:-1.61794530055;FOXN1:-1.69683672979;POU2F1..3:-1.81212513467;RBPJ:-2.26722752101 | |top_motifs=NKX2-2,8:3.2301192182;UFEwm:2.47125669882;NKX3-1:2.29281628889;ALX4:2.28453635403;PAX1,9:1.97971881369;FOXL1:1.92894858496;ESR1:1.92258024419;HES1:1.88005432967;EVI1:1.82649011701;HMX1:1.81243663521;IKZF1:1.79541941908;ZNF238:1.74057131838;NKX2-1,4:1.73377249797;XBP1:1.72565575697;GZF1:1.71006256547;GLI1..3:1.70149216543;TAL1_TCF{3,4,12}:1.63034818448;GCM1,2:1.60988320237;SRF:1.59488338875;ATF6:1.51671177817;RXRA_VDR{dimer}:1.43812249038;TFAP4:1.37323447113;HOX{A6,A7,B6,B7}:1.25829313772;TEAD1:1.24559077478;NKX3-2:1.24127813593;NR6A1:1.20721249354;EBF1:1.19095575064;RXR{A,B,G}:1.17318434566;AR:1.16003667088;TP53:1.15260411509;NFE2L1:1.11520742896;NANOG{mouse}:1.11472466016;HMGA1,2:1.08521174027;HOX{A4,D4}:1.08153780501;KLF4:1.06941837384;ZNF423:1.06677612198;NFATC1..3:1.03982125573;MYBL2:1.038786496;NR3C1:1.02907015766;TBP:1.01162954665;EN1,2:1.00002538708;NR1H4:0.987631212571;TEF:0.940204835647;HOX{A5,B5}:0.938913999958;GTF2A1,2:0.915859409223;TLX1..3_NFIC{dimer}:0.912049720221;SMAD1..7,9:0.899480903865;MTE{core}:0.88730779224;ARID5B:0.844653861116;TFCP2:0.835623592685;MAFB:0.81122102152;TFAP2{A,C}:0.755716067447;MAZ:0.664609866667;GTF2I:0.639945625284;GATA4:0.616923420354;MTF1:0.552918862852;FOXO1,3,4:0.532186373518;HIF1A:0.523517783724;DBP:0.502103973737;PAX5:0.498530128578;FOX{I1,J2}:0.486322146071;LHX3,4:0.464240375661;ZNF148:0.449477524255;SPZ1:0.427586763352;TBX4,5:0.427503828959;GFI1B:0.425623885501;TFAP2B:0.41661006538;HAND1,2:0.376182882538;ESRRA:0.307827690427;NHLH1,2:0.298293907237;FOXA2:0.281383657393;ZBTB6:0.26988909364;STAT2,4,6:0.264285708143;POU6F1:0.260486425854;MEF2{A,B,C,D}:0.245144835921;ZIC1..3:0.233942826141;HIC1:0.233658213267;ONECUT1,2:0.225231559049;PPARG:0.197414633576;HSF1,2:0.171726207583;REST:0.143001969404;PATZ1:0.13311268862;HLF:0.12656095738;MYB:0.115487897032;PAX6:0.100294700139;EP300:0.100252048896;SOX5:0.0975963053473;FOXP3:0.0958244718164;NFE2L2:0.0918525946255;XCPE1{core}:0.0877061599722;NFIL3:0.0853344185445;TGIF1:0.0554774993733;HOXA9_MEIS1:0.00725389232402;PRDM1:-0.0491488742379;SOX17:-0.057223269637;bHLH_family:-0.0596934489273;MYFfamily:-0.090957258266;HNF4A_NR2F1,2:-0.125075624382;NR5A1,2:-0.132912532512;MZF1:-0.14340898198;FOX{F1,F2,J1}:-0.211897398613;ALX1:-0.230349390971;CDC5L:-0.244316803536;PAX3,7:-0.244477338705;BACH2:-0.255266654529;FOX{D1,D2}:-0.282756508468;HNF1A:-0.285930514067;STAT1,3:-0.299172303821;PAX2:-0.303561395456;CEBPA,B_DDIT3:-0.342856393981;NFIX:-0.3454012752;AIRE:-0.387843315267;MED-1{core}:-0.394749018019;T:-0.397378308002;RREB1:-0.408529206209;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.410411926135;NFE2:-0.452661491743;DMAP1_NCOR{1,2}_SMARC:-0.472234123511;IKZF2:-0.473742413;OCT4_SOX2{dimer}:-0.47737610898;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.479494087258;FOSL2:-0.500807918145;GFI1:-0.532425406018;STAT5{A,B}:-0.537950083036;NFKB1_REL_RELA:-0.539616156417;FOS_FOS{B,L1}_JUN{B,D}:-0.541739464284;SOX2:-0.544720366592;SREBF1,2:-0.549471512314;NKX2-3_NKX2-5:-0.565297540317;SP1:-0.581200409906;LEF1_TCF7_TCF7L1,2:-0.590585314645;SPI1:-0.599277735609;SNAI1..3:-0.631521448214;ADNP_IRX_SIX_ZHX:-0.637878691491;IRF1,2:-0.642061033619;FOXM1:-0.645419682423;ZNF143:-0.672877227991;TOPORS:-0.682198414681;MYOD1:-0.705336205478;JUN:-0.709241591912;ZFP161:-0.736730265715;ETS1,2:-0.756521540827;ZNF384:-0.756994488135;POU3F1..4:-0.763697883662;EGR1..3:-0.769490489599;TLX2:-0.788417678021;RFX1:-0.796272715871;ATF5_CREB3:-0.796396088179;NRF1:-0.798951885794;RUNX1..3:-0.803186097634;CRX:-0.81378639411;ELF1,2,4:-0.845034437181;LMO2:-0.846038625692;ZEB1:-0.851005979146;RORA:-0.856526676164;PAX4:-0.861194335568;FOXD3:-0.873233772678;ELK1,4_GABP{A,B1}:-0.886715376402;YY1:-0.892077445757;SPIB:-0.898079390664;ATF4:-0.898106706384;RFX2..5_RFXANK_RFXAP:-0.905529990845;GATA6:-0.921489295961;PDX1:-0.923127597747;CDX1,2,4:-0.94208842791;ZBTB16:-0.951089225689;AHR_ARNT_ARNT2:-0.959517931002;ATF2:-0.967454178577;POU1F1:-1.01780390635;CREB1:-1.05452514246;HBP1_HMGB_SSRP1_UBTF:-1.09670078904;BREu{core}:-1.09774685626;IRF7:-1.10601158864;FOXP1:-1.13283211795;PRRX1,2:-1.1582490591;POU5F1:-1.19056766905;NFY{A,B,C}:-1.22482878253;TFDP1:-1.23689695617;CUX2:-1.31420955623;PBX1:-1.32391824839;SOX{8,9,10}:-1.34716075131;PITX1..3:-1.35197380026;NKX6-1,2:-1.39554522161;PAX8:-1.40696899989;NANOG:-1.43054407564;E2F1..5:-1.49051829055;FOXQ1:-1.52897617116;VSX1,2:-1.54170653305;BPTF:-1.61794530055;FOXN1:-1.69683672979;POU2F1..3:-1.81212513467;RBPJ:-2.26722752101 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11474-119C7;search_select_hide=table117:FF:11474-119C7 | |||
}} | }} |
Latest revision as of 18:03, 4 June 2020
Name: | Adipocyte - omental, donor2 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs12067 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12067
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12067
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.563 |
10 | 10 | 0.825 |
100 | 100 | 0.822 |
101 | 101 | 0.328 |
102 | 102 | 0.0778 |
103 | 103 | 0.238 |
104 | 104 | 0.798 |
105 | 105 | 0.108 |
106 | 106 | 0.049 |
107 | 107 | 0.0892 |
108 | 108 | 0.158 |
109 | 109 | 0.373 |
11 | 11 | 0.356 |
110 | 110 | 0.279 |
111 | 111 | 0.258 |
112 | 112 | 0.294 |
113 | 113 | 0.713 |
114 | 114 | 0.158 |
115 | 115 | 0.00501 |
116 | 116 | 0.148 |
117 | 117 | 0.838 |
118 | 118 | 0.684 |
119 | 119 | 0.361 |
12 | 12 | 0.358 |
120 | 120 | 0.514 |
121 | 121 | 0.289 |
122 | 122 | 0.333 |
123 | 123 | 0.133 |
124 | 124 | 0.841 |
125 | 125 | 0.934 |
126 | 126 | 0.717 |
127 | 127 | 0.747 |
128 | 128 | 0.179 |
129 | 129 | 0.46 |
13 | 13 | 0.856 |
130 | 130 | 0.972 |
131 | 131 | 0.809 |
132 | 132 | 0.136 |
133 | 133 | 0.866 |
134 | 134 | 0.701 |
135 | 135 | 0.235 |
136 | 136 | 0.744 |
137 | 137 | 0.789 |
138 | 138 | 0.69 |
139 | 139 | 0.117 |
14 | 14 | 0.429 |
140 | 140 | 0.872 |
141 | 141 | 0.918 |
142 | 142 | 0.736 |
143 | 143 | 0.575 |
144 | 144 | 0.881 |
145 | 145 | 0.78 |
146 | 146 | 0.759 |
147 | 147 | 0.0676 |
148 | 148 | 0.727 |
149 | 149 | 2.51059e-4 |
15 | 15 | 0.708 |
150 | 150 | 0.569 |
151 | 151 | 0.745 |
152 | 152 | 0.0312 |
153 | 153 | 0.548 |
154 | 154 | 0.991 |
155 | 155 | 0.2 |
156 | 156 | 0.973 |
157 | 157 | 0.718 |
158 | 158 | 0.137 |
159 | 159 | 0.821 |
16 | 16 | 0.0218 |
160 | 160 | 0.1 |
161 | 161 | 0.75 |
162 | 162 | 0.64 |
163 | 163 | 0.872 |
164 | 164 | 0.439 |
165 | 165 | 0.98 |
166 | 166 | 0.355 |
167 | 167 | 0.314 |
168 | 168 | 0.837 |
169 | 169 | 0.0163 |
17 | 17 | 0.27 |
18 | 18 | 0.21 |
19 | 19 | 0.00735 |
2 | 2 | 0.311 |
20 | 20 | 0.387 |
21 | 21 | 0.356 |
22 | 22 | 0.126 |
23 | 23 | 0.0268 |
24 | 24 | 0.466 |
25 | 25 | 0.484 |
26 | 26 | 0.455 |
27 | 27 | 0.105 |
28 | 28 | 0.23 |
29 | 29 | 0.67 |
3 | 3 | 0.337 |
30 | 30 | 0.507 |
31 | 31 | 0.405 |
32 | 32 | 2.48961e-12 |
33 | 33 | 0.868 |
34 | 34 | 0.733 |
35 | 35 | 0.46 |
36 | 36 | 0.119 |
37 | 37 | 0.13 |
38 | 38 | 0.769 |
39 | 39 | 0.141 |
4 | 4 | 0.922 |
40 | 40 | 0.652 |
41 | 41 | 0.859 |
42 | 42 | 0.641 |
43 | 43 | 0.14 |
44 | 44 | 0.185 |
45 | 45 | 0.656 |
46 | 46 | 0.259 |
47 | 47 | 0.582 |
48 | 48 | 0.767 |
49 | 49 | 0.405 |
5 | 5 | 0.32 |
50 | 50 | 0.668 |
51 | 51 | 0.815 |
52 | 52 | 0.424 |
53 | 53 | 0.339 |
54 | 54 | 0.754 |
55 | 55 | 0.371 |
56 | 56 | 0.846 |
57 | 57 | 0.406 |
58 | 58 | 0.796 |
59 | 59 | 0.0407 |
6 | 6 | 0.566 |
60 | 60 | 0.384 |
61 | 61 | 0.363 |
62 | 62 | 0.612 |
63 | 63 | 0.158 |
64 | 64 | 0.7 |
65 | 65 | 0.0778 |
66 | 66 | 0.159 |
67 | 67 | 0.568 |
68 | 68 | 0.204 |
69 | 69 | 0.284 |
7 | 7 | 0.792 |
70 | 70 | 0.291 |
71 | 71 | 0.525 |
72 | 72 | 0.879 |
73 | 73 | 0.0272 |
74 | 74 | 0.215 |
75 | 75 | 0.442 |
76 | 76 | 0.449 |
77 | 77 | 0.0047 |
78 | 78 | 0.767 |
79 | 79 | 0.0203 |
8 | 8 | 0.159 |
80 | 80 | 0.769 |
81 | 81 | 0.361 |
82 | 82 | 0.0746 |
83 | 83 | 0.999 |
84 | 84 | 0.0689 |
85 | 85 | 0.00121 |
86 | 86 | 0.579 |
87 | 87 | 0.307 |
88 | 88 | 0.43 |
89 | 89 | 0.0138 |
9 | 9 | 0.32 |
90 | 90 | 0.67 |
91 | 91 | 0.634 |
92 | 92 | 0.0306 |
93 | 93 | 0.932 |
94 | 94 | 0.535 |
95 | 95 | 0.403 |
96 | 96 | 0.502 |
97 | 97 | 0.29 |
98 | 98 | 0.471 |
99 | 99 | 0.032 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12067
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000039 human adipocyte of omentum tissue sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000255 (eukaryotic cell)
0000136 (fat cell)
0002615 (adipocyte of omentum tissue)
UBERON: Anatomy
0000468 (multi-cellular organism)
0003688 (omentum)
0002100 (trunk)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0004457 (cavity lining)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004923 (organ component layer)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002323 (body cavity)
0000042 (serous membrane)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0002417 (abdominal segment of trunk)
0002358 (peritoneum)
0000916 (abdomen)
0003684 (abdominal cavity)
0001178 (visceral peritoneum)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000039 (human adipocyte of omentum tissue sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)