FF:11863-125A9: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00004949 | |DRA_sample_Accession=CAGE@SAMD00004949 | ||
|accession_numbers=CAGE;DRX008132;DRR009004;DRZ000429;DRZ001814 | |accession_numbers=CAGE;DRX008132;DRR009004;DRZ000429;DRZ001814;DRZ011779;DRZ013164 | ||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057 | ||
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|def= | |def= | ||
|expression_enrichment_score=chr11:47400078..47400106,-!p1@SPI1!2.75!560.80!SPI1;;chr12:54778471..54778528,-!p1@ZNF385A!2.59!391.85!ZNF385A;;chr2:68592406..68592424,+!p1@PLEK!2.40!248.34!PLEK;;chr7:115670804..115670825,-!p1@TFEC!2.24!172.01!TFEC;;chr1:25256756..25256774,-!p1@RUNX3!2.02!188.73!RUNX3;;chr11:47399947..47399961,-!p3@SPI1!1.99!96.40!SPI1;;chr11:47400062..47400077,-!p2@SPI1!1.98!93.93!SPI1;;chr16:85932760..85932775,+!p1@IRF8!1.94!86.51!IRF8;;chr21:34442439..34442455,+!p1@OLIG1!1.93!84.19!OLIG1;;chr11:47399996..47400014,-!p4@SPI1!1.82!65.14!SPI1;;chr20:39317868..39317884,-!p1@MAFB!1.78!666.51!MAFB;;chr12:54778351..54778378,-!p6@ZNF385A!1.77!58.30!ZNF385A;;chr2:70142232..70142251,+!p1@MXD1!1.75!296.76!MXD1;;chr11:47400032..47400043,-!p5@SPI1!1.75!54.67!SPI1;;chr2:145277640..145277771,-!p1@ZEB2!1.68!592.06!ZEB2;;chr6:106534192..106534224,+!p1@PRDM1!1.64!116.46!PRDM1;;chr7:128577972..128578047,+!p1@IRF5!1.63!65.28!IRF5;;chr19:50432132..50432217,+!p2@ATF5!1.62!48.56!ATF5;;chr19:33793430..33793447,-!p1@CEBPA!1.59!152.67!CEBPA;;chr7:50344289..50344323,+!p1@IKZF1!1.53!33.01!IKZF1;;chr19:13213662..13213686,-!p1@LYL1!1.52!46.67!LYL1;;chr12:54694758..54694805,-!p1@NFE2!1.50!36.64!NFE2;;chr11:47400045..47400060,-!p6@SPI1!1.49!29.66!SPI1;;chr10:31288398..31288455,-!p2@ZNF438!1.46!32.57!ZNF438;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.46!28.06!ZBED1;;chr6:106534230..106534254,+!p2@PRDM1!1.43!63.83!PRDM1;;chr10:51572408..51572454,+!p3@NCOA4!1.42!142.64!NCOA4;;chr9:117150254..117150271,-!p1@AKNA!1.42!66.88!AKNA;;chr6:144385698..144385742,-!p2@PLAGL1!1.40!29.37!PLAGL1;;chr10:51572339..51572376,+!p4@NCOA4!1.39!52.20!NCOA4;;chr21:36260295..36260310,-!p3@RUNX1!1.37!35.48!RUNX1;;chr13:41593425..41593480,-!p1@ELF1!1.36!135.22!ELF1;;chr10:31288370..31288393,-!p3@ZNF438!1.34!20.94!ZNF438;;chr2:145275162..145275202,-!p2@ZEB2!1.33!116.90!ZEB2;;chr21:30671690..30671762,+!p2@BACH1!1.31!64.56!BACH1;;chrX:129244454..129244488,-!p1@ELF4!1.29!130.42!ELF4;;chr2:145277882..145277967,-!p3@ZEB2!1.29!31.41!ZEB2;;chr19:42636586..42636607,-!p1@POU2F2!1.27!47.84!POU2F2;;chr12:48298765..48298783,-!p2@VDR!1.26!35.48!VDR;;chrX:129244430..129244442,-!p5@ELF4!1.26!17.30!ELF4;;chr12:48298785..48298828,-!p1@VDR!1.24!84.62!VDR;;chr10:35484053..35484076,+!p1@CREM!1.24!40.57!CREM;;chr6:1312325..1312340,+!p1@FOXQ1!1.24!26.90!FOXQ1;;chr21:30672433..30672464,+!p6@BACH1!1.24!16.58!BACH1;;chr1:25256439..25256476,-!p3@RUNX3!1.24!16.43!RUNX3;;chr19:13213954..13214021,-!p4@LYL1!1.24!16.28!LYL1;;chr16:31885093..31885165,+!p1@ZNF267!1.23!237.44!ZNF267;;chr12:96588279..96588299,+!p4@ELK3!1.23!75.32!ELK3;;chr11:47399920..47399931,-!p7@SPI1!1.22!15.70!SPI1;;chr17:38497662..38497713,+!p4@RARA!1.21!17.45!RARA;;chr18:3449720..3449749,+!p2@TGIF1!1.20!31.26!TGIF1;;chr21:30671235..30671253,+!p1@BACH1!1.18!176.80!BACH1;;chr6:44233252..44233296,-!p1@NFKBIE!1.18!137.69!NFKBIE;;chr21:36421535..36421610,-!p2@RUNX1!1.18!49.58!RUNX1;;chr21:34442540..34442560,+!p2@OLIG1!1.18!14.25!OLIG1;;chr19:45971246..45971265,+!p1@FOSB!1.17!252.41!FOSB;;chr5:88178983..88179012,-!p1@MEF2C!1.16!103.81!MEF2C;;chr12:96588219..96588263,+!p2@ELK3!1.16!95.82!ELK3;;chr2:28618532..28618610,+!p4@FOSL2!1.16!22.97!FOSL2;;chr7:50343634..50343717,+!p2@IKZF1!1.16!13.52!IKZF1;;chr4:106068026..106068084,+!p1@TET2!1.15!116.75!TET2;;chr10:94449703..94449718,+!p1@HHEX!1.15!50.45!HHEX;;chr1:156470515..156470542,-!p2@MEF2D!1.14!67.03!MEF2D;;chr12:11802753..11802834,+!p2@ETV6!1.14!63.10!ETV6;;chr2:238600933..238600985,+!p3@LRRFIP1!1.12!66.16!LRRFIP1;;chr12:54785074..54785122,-!p2@ZNF385A!1.12!18.61!ZNF385A;;chr12:72056749..72056767,+!p6@THAP2!1.12!13.67!THAP2;;chrX:106960285..106960299,-!p1@TSC22D3!1.11!317.26!TSC22D3;;chr7:149470641..149470694,-!p1@ZNF467!1.11!54.09!ZNF467;;chr6:15246200..15246214,+!p2@JARID2!1.11!33.01!JARID2;;chr6:391743..391759,+!p1@IRF4!1.10!11.49!IRF4;;chr21:34398234..34398250,+!p1@OLIG2!1.10!11.49!OLIG2;;chr20:48599506..48599526,+!p1@SNAI1!1.09!72.84!SNAI1;;chr14:35872453..35872485,-!p2@NFKBIA!1.09!28.21!NFKBIA;;chr2:70314240..70314256,+!p4@PCBP1!1.08!22.83!PCBP1;;chr12:72056773..72056796,+!p3@THAP2!1.08!14.54!THAP2;;chr12:54785054..54785072,-!p4@ZNF385A!1.08!12.65!ZNF385A;;chr12:124873852..124873881,-!p3@NCOR2!1.07!65.72!NCOR2;;chr1:156470494..156470505,-!p3@MEF2D!1.07!15.56!MEF2D;;chr12:96588368..96588394,+!p3@ELK3!1.06!28.35!ELK3;;chr19:45250948..45250998,+!p3@BCL3!1.06!27.04!BCL3;;chr19:45251395..45251432,+!p8@BCL3!1.05!10.32!BCL3;;chr2:238600998..238601013,+!p5@LRRFIP1!1.05!10.18!LRRFIP1;;chr8:116681123..116681143,-!p4@TRPS1!1.04!19.63!TRPS1;;chr12:54694807..54694832,-!p3@NFE2!1.04!9.89!NFE2;;chr15:90544532..90544563,+!p1@ZNF710!1.03!19.48!ZNF710;;chr19:19496539..19496576,+!p8@GATAD2A!1.03!17.16!GATAD2A;;chr4:185395633..185395651,-!p2@IRF2!1.03!15.85!IRF2;;chr7:137620684..137620711,-!p4@CREB3L2!1.03!9.60!CREB3L2;;chr15:31619013..31619095,+!p1@KLF13!1.02!224.06!KLF13;;chr9:88969303..88969335,-!p1@ZCCHC6!1.02!89.71!ZCCHC6;;chr9:137217986..137218049,+!p3@RXRA!1.02!27.77!RXRA;;chr11:128563948..128564003,+!p1@FLI1!1.01!112.97!FLI1;;chr2:70167296..70167306,+!p3@MXD1!1.01!14.25!MXD1;;chr18:3449618..3449634,+!p13@TGIF1!1.01!11.63!TGIF1;;chr2:68592394..68592405,+!p2@PLEK!1.01!9.16!PLEK;;chr20:48807351..48807384,+!p1@CEBPB!1.00!945.23!CEBPB;;chr11:615942..615957,-!p1@IRF7!1.00!86.08!IRF7;;chr19:36391434..36391450,-!p1@NFKBID!1.00!17.88!NFKBID;;chr12:72056800..72056834,+!p1@THAP2!0.99!12.07!THAP2;;chr7:115670792..115670797,-!p2@TFEC!0.99!8.87!TFEC;;chr13:41593405..41593416,-!p9@ELF1!0.99!8.72!ELF1;;chr2:185463247..185463263,+!p1@ZNF804A!0.98!15.41!ZNF804A;;chr5:88179195..88179224,-!p3@MEF2C!0.98!13.81!MEF2C;;chr1:158979872..158979898,+!p3@IFI16!0.96!25.44!IFI16;;chr8:116681150..116681164,-!p5@TRPS1!0.96!16.28!TRPS1;;chr17:38474489..38474548,+!p1@RARA!0.95!257.65!RARA;;chr7:17338266..17338282,+!p1@AHR!0.95!88.69!AHR;;chr10:64576105..64576133,-!p1@EGR2!0.95!16.58!EGR2;;chr6:15246261..15246312,+!p1@JARID2!0.94!193.38!JARID2;;chrX:106960180..106960197,-!p2@TSC22D3!0.94!30.53!TSC22D3;;chr17:38498402..38498445,+!p3@RARA!0.94!28.93!RARA;;chr19:45252008..45252024,+!p2@BCL3!0.94!26.17!BCL3;;chr9:3525727..3525828,-!p2@RFX3!0.94!20.36!RFX3;;chr7:99156393..99156433,+!p6@ZNF655!0.94!17.74!ZNF655;;chr6:15246217..15246228,+!p3@JARID2!0.94!13.81!JARID2;;chr2:28615716..28615733,+!p1@FOSL2!0.93!369.89!FOSL2;;chr2:97202480..97202499,+!p1@ARID5A!0.93!78.95!ARID5A;;chr2:61108695..61108753,+!p1@REL!0.93!53.94!REL;;chr19:6110474..6110551,-!p1@RFX2!0.93!47.25!RFX2;;chr8:71316428..71316459,-!p2@NCOA2!0.93!12.94!NCOA2;;chr12:54694653..54694672,-!p2@NFE2!0.93!7.56!NFE2;;chr10:31288329..31288353,-!p7@ZNF438!0.93!7.42!ZNF438;;chr13:41593392..41593403,-!p7@ELF1!0.93!7.42!ELF1;;chr7:137620650..137620677,-!p3@CREB3L2!0.93!7.42!CREB3L2;;chr2:145277589..145277612,-!p12@ZEB2!0.93!7.42!ZEB2;;chr3:170075436..170075520,+!p1@SKIL!0.92!164.45!SKIL;;chr17:40440481..40440550,+!p1@STAT5A!0.92!55.11!STAT5A;;chr2:70142189..70142223,+!p2@MXD1!0.92!54.38!MXD1;;chr19:4067039..4067064,-!p3@ZBTB7A!0.92!22.10!ZBTB7A;;chr18:3448455..3448480,+!p5@TGIF1!0.92!13.81!TGIF1;;chr20:48807615..48807644,+!p6@CEBPB!0.92!12.36!CEBPB;;chr12:11802690..11802704,+!p4@ETV6!0.92!10.76!ETV6;;chr2:231090433..231090469,+!p1@SP140!0.92!7.27!SP140;;chr7:28725740..28725778,+!p1@CREB5!0.91!66.45!CREB5;;chr18:3449586..3449617,+!p8@TGIF1!0.91!11.63!TGIF1;;chr19:50432104..50432126,+!p6@ATF5!0.91!7.12!ATF5;;chr5:142782823..142782854,-!p3@NR3C1!0.90!10.18!NR3C1;;chr9:88969287..88969297,-!p3@ZCCHC6!0.90!9.45!ZCCHC6;;chr10:135044190..135044229,+!p3@UTF1!0.90!6.98!UTF1;;chr14:35873947..35873965,-!p1@NFKBIA!0.89!448.70!NFKBIA;;chr9:129567282..129567353,+!p1@ZBTB43!0.89!92.47!ZBTB43;;chr1:157108130..157108173,-!p1@ETV3!0.89!51.33!ETV3;;chr19:19496624..19496660,+!p3@GATAD2A!0.89!31.99!GATAD2A;;chr16:3313791..3313834,+!p2@ZNF263!0.89!15.41!ZNF263;;chr8:116681194..116681214,-!p1@TRPS1!0.88!64.85!TRPS1;;chr10:104154246..104154347,+!p3@NFKB2!0.88!42.60!NFKB2;;chr1:158979851..158979865,+!p5@IFI16!0.88!14.98!IFI16;;chr2:231280954..231280965,+!p2@SP100!0.87!12.07!SP100;;chr1:8484007..8484061,-!p13@RERE!0.87!8.43!RERE;;chr9:110250697..110250738,-!p2@KLF4!0.87!7.56!KLF4;;chr4:103422499..103422632,+!p1@NFKB1!0.86!137.26!NFKB1;;chr5:172483347..172483407,+!p1@C5orf41!0.85!49.29!CREBRF;;chr14:74226747..74226779,-!p3@C14orf43!0.85!36.06!C14orf43;;chr17:38498594..38498661,+!p2@RARA!0.85!21.66!RARA;;chr17:79881332..79881348,-!p3@MAFG!0.85!9.16!MAFG;;chr9:88969339..88969422,-!p2@ZCCHC6!0.84!48.71!ZCCHC6;;chr7:150974206..150974255,-!p1@SMARCD3!0.84!39.69!SMARCD3;;chr18:74207147..74207183,-!p1@ZNF516!0.84!18.61!ZNF516;;chr9:110252035..110252057,-!p1@KLF4!0.83!98.29!KLF4;;chr14:65569101..65569119,-!p3@MAX!0.83!19.34!MAX;;chr20:48807456..48807475,+!p3@CEBPB!0.83!11.49!CEBPB;;chr15:31619871..31619884,+!p8@KLF13!0.83!9.89!KLF13;;chr2:238600789..238600925,+!p1@LRRFIP1!0.82!119.81!LRRFIP1;;chr10:94449675..94449694,+!p2@HHEX!0.82!15.85!HHEX;;chr18:3449527..3449582,+!p6@TGIF1!0.82!11.05!TGIF1;;chr1:44679370..44679422,+!p3@DMAP1!0.82!7.56!DMAP1;;chr4:185395590..185395627,-!p3@IRF2!0.82!7.12!IRF2;;chrX:153305787..153305807,-!p3@MECP2!0.82!5.67!MECP2;;chr8:53373491..53373506,-!p4@ST18!0.82!5.67!ST18;;chr14:35872962..35873025,-!p3@NFKBIA!0.81!14.54!NFKBIA;;chr6:15246741..15246765,+!p9@JARID2!0.81!5.53!JARID2;;chr10:104155480..104155534,+!p2@NFKB2!0.80!37.66!NFKB2;;chr9:137218341..137218361,+!p2@RXRA!0.80!23.55!RXRA;;chr5:321810..321877,+!p1@AHRR!0.80!17.88!AHRR;;chr2:145275228..145275241,-!p11@ZEB2!0.80!6.54!ZEB2;;chr2:208394817..208394834,+!p3@CREB1!0.79!22.39!CREB1;;chr17:79885537..79885554,-!p2@MAFG!0.79!10.32!MAFG;;chr2:74730430..74730451,-!p1@LBX2!0.79!8.72!LBX2;;chr2:70166258..70166288,+!p5@MXD1!0.79!5.23!MXD1;;chr1:25291620..25291635,-!p4@RUNX3!0.79!5.23!RUNX3;;chr21:36260325..36260341,-!p14@RUNX1!0.79!5.23!RUNX1;;chr19:45251943..45252006,+!p1@BCL3!0.78!143.65!BCL3;;chr10:104155455..104155479,+!p1@NFKB2!0.78!79.97!NFKB2;;chr6:41703296..41703367,-!p1@TFEB!0.78!27.33!TFEB;;chr7:17338324..17338341,+!p3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| |expression_enrichment_score=chr11:47400078..47400106,-!p1@SPI1!2.75!560.80!SPI1;;chr12:54778471..54778528,-!p1@ZNF385A!2.59!391.85!ZNF385A;;chr2:68592406..68592424,+!p1@PLEK!2.40!248.34!PLEK;;chr7:115670804..115670825,-!p1@TFEC!2.24!172.01!TFEC;;chr1:25256756..25256774,-!p1@RUNX3!2.02!188.73!RUNX3;;chr11:47399947..47399961,-!p3@SPI1!1.99!96.40!SPI1;;chr11:47400062..47400077,-!p2@SPI1!1.98!93.93!SPI1;;chr16:85932760..85932775,+!p1@IRF8!1.94!86.51!IRF8;;chr21:34442439..34442455,+!p1@OLIG1!1.93!84.19!OLIG1;;chr11:47399996..47400014,-!p4@SPI1!1.82!65.14!SPI1;;chr20:39317868..39317884,-!p1@MAFB!1.78!666.51!MAFB;;chr12:54778351..54778378,-!p6@ZNF385A!1.77!58.30!ZNF385A;;chr2:70142232..70142251,+!p1@MXD1!1.75!296.76!MXD1;;chr11:47400032..47400043,-!p5@SPI1!1.75!54.67!SPI1;;chr2:145277640..145277771,-!p1@ZEB2!1.68!592.06!ZEB2;;chr6:106534192..106534224,+!p1@PRDM1!1.64!116.46!PRDM1;;chr7:128577972..128578047,+!p1@IRF5!1.63!65.28!IRF5;;chr19:50432132..50432217,+!p2@ATF5!1.62!48.56!ATF5;;chr19:33793430..33793447,-!p1@CEBPA!1.59!152.67!CEBPA;;chr7:50344289..50344323,+!p1@IKZF1!1.53!33.01!IKZF1;;chr19:13213662..13213686,-!p1@LYL1!1.52!46.67!LYL1;;chr12:54694758..54694805,-!p1@NFE2!1.50!36.64!NFE2;;chr11:47400045..47400060,-!p6@SPI1!1.49!29.66!SPI1;;chr10:31288398..31288455,-!p2@ZNF438!1.46!32.57!ZNF438;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.46!28.06!ZBED1;;chr6:106534230..106534254,+!p2@PRDM1!1.43!63.83!PRDM1;;chr10:51572408..51572454,+!p3@NCOA4!1.42!142.64!NCOA4;;chr9:117150254..117150271,-!p1@AKNA!1.42!66.88!AKNA;;chr6:144385698..144385742,-!p2@PLAGL1!1.40!29.37!PLAGL1;;chr10:51572339..51572376,+!p4@NCOA4!1.39!52.20!NCOA4;;chr21:36260295..36260310,-!p3@RUNX1!1.37!35.48!RUNX1;;chr13:41593425..41593480,-!p1@ELF1!1.36!135.22!ELF1;;chr10:31288370..31288393,-!p3@ZNF438!1.34!20.94!ZNF438;;chr2:145275162..145275202,-!p2@ZEB2!1.33!116.90!ZEB2;;chr21:30671690..30671762,+!p2@BACH1!1.31!64.56!BACH1;;chrX:129244454..129244488,-!p1@ELF4!1.29!130.42!ELF4;;chr2:145277882..145277967,-!p3@ZEB2!1.29!31.41!ZEB2;;chr19:42636586..42636607,-!p1@POU2F2!1.27!47.84!POU2F2;;chr12:48298765..48298783,-!p2@VDR!1.26!35.48!VDR;;chrX:129244430..129244442,-!p5@ELF4!1.26!17.30!ELF4;;chr12:48298785..48298828,-!p1@VDR!1.24!84.62!VDR;;chr10:35484053..35484076,+!p1@CREM!1.24!40.57!CREM;;chr6:1312325..1312340,+!p1@FOXQ1!1.24!26.90!FOXQ1;;chr21:30672433..30672464,+!p6@BACH1!1.24!16.58!BACH1;;chr1:25256439..25256476,-!p3@RUNX3!1.24!16.43!RUNX3;;chr19:13213954..13214021,-!p4@LYL1!1.24!16.28!LYL1;;chr16:31885093..31885165,+!p1@ZNF267!1.23!237.44!ZNF267;;chr12:96588279..96588299,+!p4@ELK3!1.23!75.32!ELK3;;chr11:47399920..47399931,-!p7@SPI1!1.22!15.70!SPI1;;chr17:38497662..38497713,+!p4@RARA!1.21!17.45!RARA;;chr18:3449720..3449749,+!p2@TGIF1!1.20!31.26!TGIF1;;chr21:30671235..30671253,+!p1@BACH1!1.18!176.80!BACH1;;chr6:44233252..44233296,-!p1@NFKBIE!1.18!137.69!NFKBIE;;chr21:36421535..36421610,-!p2@RUNX1!1.18!49.58!RUNX1;;chr21:34442540..34442560,+!p2@OLIG1!1.18!14.25!OLIG1;;chr19:45971246..45971265,+!p1@FOSB!1.17!252.41!FOSB;;chr5:88178983..88179012,-!p1@MEF2C!1.16!103.81!MEF2C;;chr12:96588219..96588263,+!p2@ELK3!1.16!95.82!ELK3;;chr2:28618532..28618610,+!p4@FOSL2!1.16!22.97!FOSL2;;chr7:50343634..50343717,+!p2@IKZF1!1.16!13.52!IKZF1;;chr4:106068026..106068084,+!p1@TET2!1.15!116.75!TET2;;chr10:94449703..94449718,+!p1@HHEX!1.15!50.45!HHEX;;chr1:156470515..156470542,-!p2@MEF2D!1.14!67.03!MEF2D;;chr12:11802753..11802834,+!p2@ETV6!1.14!63.10!ETV6;;chr2:238600933..238600985,+!p3@LRRFIP1!1.12!66.16!LRRFIP1;;chr12:54785074..54785122,-!p2@ZNF385A!1.12!18.61!ZNF385A;;chr12:72056749..72056767,+!p6@THAP2!1.12!13.67!THAP2;;chrX:106960285..106960299,-!p1@TSC22D3!1.11!317.26!TSC22D3;;chr7:149470641..149470694,-!p1@ZNF467!1.11!54.09!ZNF467;;chr6:15246200..15246214,+!p2@JARID2!1.11!33.01!JARID2;;chr6:391743..391759,+!p1@IRF4!1.10!11.49!IRF4;;chr21:34398234..34398250,+!p1@OLIG2!1.10!11.49!OLIG2;;chr20:48599506..48599526,+!p1@SNAI1!1.09!72.84!SNAI1;;chr14:35872453..35872485,-!p2@NFKBIA!1.09!28.21!NFKBIA;;chr2:70314240..70314256,+!p4@PCBP1!1.08!22.83!PCBP1;;chr12:72056773..72056796,+!p3@THAP2!1.08!14.54!THAP2;;chr12:54785054..54785072,-!p4@ZNF385A!1.08!12.65!ZNF385A;;chr12:124873852..124873881,-!p3@NCOR2!1.07!65.72!NCOR2;;chr1:156470494..156470505,-!p3@MEF2D!1.07!15.56!MEF2D;;chr12:96588368..96588394,+!p3@ELK3!1.06!28.35!ELK3;;chr19:45250948..45250998,+!p3@BCL3!1.06!27.04!BCL3;;chr19:45251395..45251432,+!p8@BCL3!1.05!10.32!BCL3;;chr2:238600998..238601013,+!p5@LRRFIP1!1.05!10.18!LRRFIP1;;chr8:116681123..116681143,-!p4@TRPS1!1.04!19.63!TRPS1;;chr12:54694807..54694832,-!p3@NFE2!1.04!9.89!NFE2;;chr15:90544532..90544563,+!p1@ZNF710!1.03!19.48!ZNF710;;chr19:19496539..19496576,+!p8@GATAD2A!1.03!17.16!GATAD2A;;chr4:185395633..185395651,-!p2@IRF2!1.03!15.85!IRF2;;chr7:137620684..137620711,-!p4@CREB3L2!1.03!9.60!CREB3L2;;chr15:31619013..31619095,+!p1@KLF13!1.02!224.06!KLF13;;chr9:88969303..88969335,-!p1@ZCCHC6!1.02!89.71!ZCCHC6;;chr9:137217986..137218049,+!p3@RXRA!1.02!27.77!RXRA;;chr11:128563948..128564003,+!p1@FLI1!1.01!112.97!FLI1;;chr2:70167296..70167306,+!p3@MXD1!1.01!14.25!MXD1;;chr18:3449618..3449634,+!p13@TGIF1!1.01!11.63!TGIF1;;chr2:68592394..68592405,+!p2@PLEK!1.01!9.16!PLEK;;chr20:48807351..48807384,+!p1@CEBPB!1.00!945.23!CEBPB;;chr11:615942..615957,-!p1@IRF7!1.00!86.08!IRF7;;chr19:36391434..36391450,-!p1@NFKBID!1.00!17.88!NFKBID;;chr12:72056800..72056834,+!p1@THAP2!0.99!12.07!THAP2;;chr7:115670792..115670797,-!p2@TFEC!0.99!8.87!TFEC;;chr13:41593405..41593416,-!p9@ELF1!0.99!8.72!ELF1;;chr2:185463247..185463263,+!p1@ZNF804A!0.98!15.41!ZNF804A;;chr5:88179195..88179224,-!p3@MEF2C!0.98!13.81!MEF2C;;chr1:158979872..158979898,+!p3@IFI16!0.96!25.44!IFI16;;chr8:116681150..116681164,-!p5@TRPS1!0.96!16.28!TRPS1;;chr17:38474489..38474548,+!p1@RARA!0.95!257.65!RARA;;chr7:17338266..17338282,+!p1@AHR!0.95!88.69!AHR;;chr10:64576105..64576133,-!p1@EGR2!0.95!16.58!EGR2;;chr6:15246261..15246312,+!p1@JARID2!0.94!193.38!JARID2;;chrX:106960180..106960197,-!p2@TSC22D3!0.94!30.53!TSC22D3;;chr17:38498402..38498445,+!p3@RARA!0.94!28.93!RARA;;chr19:45252008..45252024,+!p2@BCL3!0.94!26.17!BCL3;;chr9:3525727..3525828,-!p2@RFX3!0.94!20.36!RFX3;;chr7:99156393..99156433,+!p6@ZNF655!0.94!17.74!ZNF655;;chr6:15246217..15246228,+!p3@JARID2!0.94!13.81!JARID2;;chr2:28615716..28615733,+!p1@FOSL2!0.93!369.89!FOSL2;;chr2:97202480..97202499,+!p1@ARID5A!0.93!78.95!ARID5A;;chr2:61108695..61108753,+!p1@REL!0.93!53.94!REL;;chr19:6110474..6110551,-!p1@RFX2!0.93!47.25!RFX2;;chr8:71316428..71316459,-!p2@NCOA2!0.93!12.94!NCOA2;;chr12:54694653..54694672,-!p2@NFE2!0.93!7.56!NFE2;;chr10:31288329..31288353,-!p7@ZNF438!0.93!7.42!ZNF438;;chr13:41593392..41593403,-!p7@ELF1!0.93!7.42!ELF1;;chr7:137620650..137620677,-!p3@CREB3L2!0.93!7.42!CREB3L2;;chr2:145277589..145277612,-!p12@ZEB2!0.93!7.42!ZEB2;;chr3:170075436..170075520,+!p1@SKIL!0.92!164.45!SKIL;;chr17:40440481..40440550,+!p1@STAT5A!0.92!55.11!STAT5A;;chr2:70142189..70142223,+!p2@MXD1!0.92!54.38!MXD1;;chr19:4067039..4067064,-!p3@ZBTB7A!0.92!22.10!ZBTB7A;;chr18:3448455..3448480,+!p5@TGIF1!0.92!13.81!TGIF1;;chr20:48807615..48807644,+!p6@CEBPB!0.92!12.36!CEBPB;;chr12:11802690..11802704,+!p4@ETV6!0.92!10.76!ETV6;;chr2:231090433..231090469,+!p1@SP140!0.92!7.27!SP140;;chr7:28725740..28725778,+!p1@CREB5!0.91!66.45!CREB5;;chr18:3449586..3449617,+!p8@TGIF1!0.91!11.63!TGIF1;;chr19:50432104..50432126,+!p6@ATF5!0.91!7.12!ATF5;;chr5:142782823..142782854,-!p3@NR3C1!0.90!10.18!NR3C1;;chr9:88969287..88969297,-!p3@ZCCHC6!0.90!9.45!ZCCHC6;;chr10:135044190..135044229,+!p3@UTF1!0.90!6.98!UTF1;;chr14:35873947..35873965,-!p1@NFKBIA!0.89!448.70!NFKBIA;;chr9:129567282..129567353,+!p1@ZBTB43!0.89!92.47!ZBTB43;;chr1:157108130..157108173,-!p1@ETV3!0.89!51.33!ETV3;;chr19:19496624..19496660,+!p3@GATAD2A!0.89!31.99!GATAD2A;;chr16:3313791..3313834,+!p2@ZNF263!0.89!15.41!ZNF263;;chr8:116681194..116681214,-!p1@TRPS1!0.88!64.85!TRPS1;;chr10:104154246..104154347,+!p3@NFKB2!0.88!42.60!NFKB2;;chr1:158979851..158979865,+!p5@IFI16!0.88!14.98!IFI16;;chr2:231280954..231280965,+!p2@SP100!0.87!12.07!SP100;;chr1:8484007..8484061,-!p13@RERE!0.87!8.43!RERE;;chr9:110250697..110250738,-!p2@KLF4!0.87!7.56!KLF4;;chr4:103422499..103422632,+!p1@NFKB1!0.86!137.26!NFKB1;;chr5:172483347..172483407,+!p1@C5orf41!0.85!49.29!CREBRF;;chr14:74226747..74226779,-!p3@C14orf43!0.85!36.06!C14orf43;;chr17:38498594..38498661,+!p2@RARA!0.85!21.66!RARA;;chr17:79881332..79881348,-!p3@MAFG!0.85!9.16!MAFG;;chr9:88969339..88969422,-!p2@ZCCHC6!0.84!48.71!ZCCHC6;;chr7:150974206..150974255,-!p1@SMARCD3!0.84!39.69!SMARCD3;;chr18:74207147..74207183,-!p1@ZNF516!0.84!18.61!ZNF516;;chr9:110252035..110252057,-!p1@KLF4!0.83!98.29!KLF4;;chr14:65569101..65569119,-!p3@MAX!0.83!19.34!MAX;;chr20:48807456..48807475,+!p3@CEBPB!0.83!11.49!CEBPB;;chr15:31619871..31619884,+!p8@KLF13!0.83!9.89!KLF13;;chr2:238600789..238600925,+!p1@LRRFIP1!0.82!119.81!LRRFIP1;;chr10:94449675..94449694,+!p2@HHEX!0.82!15.85!HHEX;;chr18:3449527..3449582,+!p6@TGIF1!0.82!11.05!TGIF1;;chr1:44679370..44679422,+!p3@DMAP1!0.82!7.56!DMAP1;;chr4:185395590..185395627,-!p3@IRF2!0.82!7.12!IRF2;;chrX:153305787..153305807,-!p3@MECP2!0.82!5.67!MECP2;;chr8:53373491..53373506,-!p4@ST18!0.82!5.67!ST18;;chr14:35872962..35873025,-!p3@NFKBIA!0.81!14.54!NFKBIA;;chr6:15246741..15246765,+!p9@JARID2!0.81!5.53!JARID2;;chr10:104155480..104155534,+!p2@NFKB2!0.80!37.66!NFKB2;;chr9:137218341..137218361,+!p2@RXRA!0.80!23.55!RXRA;;chr5:321810..321877,+!p1@AHRR!0.80!17.88!AHRR;;chr2:145275228..145275241,-!p11@ZEB2!0.80!6.54!ZEB2;;chr2:208394817..208394834,+!p3@CREB1!0.79!22.39!CREB1;;chr17:79885537..79885554,-!p2@MAFG!0.79!10.32!MAFG;;chr2:74730430..74730451,-!p1@LBX2!0.79!8.72!LBX2;;chr2:70166258..70166288,+!p5@MXD1!0.79!5.23!MXD1;;chr1:25291620..25291635,-!p4@RUNX3!0.79!5.23!RUNX3;;chr21:36260325..36260341,-!p14@RUNX1!0.79!5.23!RUNX1;;chr19:45251943..45252006,+!p1@BCL3!0.78!143.65!BCL3;;chr10:104155455..104155479,+!p1@NFKB2!0.78!79.97!NFKB2;;chr6:41703296..41703367,-!p1@TFEB!0.78!27.33!TFEB;;chr7:17338324..17338341,+!p3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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405 | |||
|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057 | |ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 41: | Line 42: | ||
|fonse_treatment_closure=FF:0000343,FF:0011101,FF:11863-125A9 | |fonse_treatment_closure=FF:0000343,FF:0011101,FF:11863-125A9 | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520mock%2520treated%252c%2520donor1.CNhs13468.11863-125A9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520mock%2520treated%252c%2520donor1.CNhs13468.11863-125A9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520mock%2520treated%252c%2520donor1.CNhs13468.11863-125A9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520mock%2520treated%252c%2520donor1.CNhs13468.11863-125A9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520mock%2520treated%252c%2520donor1.CNhs13468.11863-125A9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11863-125A9 | |id=FF:11863-125A9 | ||
|is_a=EFO:0002091;;FF:0011101 | |is_a=EFO:0002091;;FF:0011101 | ||
Line 46: | Line 52: | ||
|library_id=CNhs13468 | |library_id=CNhs13468 | ||
|library_id_phase_based=2:CNhs13468 | |library_id_phase_based=2:CNhs13468 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11863 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11863 | |||
|name=CD14+ monocytes - mock treated, donor1 | |name=CD14+ monocytes - mock treated, donor1 | ||
|namespace= | |namespace= | ||
Line 53: | Line 63: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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|top_motifs=EP300:2.50671416967;SREBF1,2:2.48136491327;SPI1:2.45408784517;SPIB:2.39664108299;NFE2L2:2.15982073987;FOXD3:2.12517530572;ETS1,2:1.97546976068;NFE2:1.90005914148;DMAP1_NCOR{1,2}_SMARC:1.85449667384;NANOG{mouse}:1.84256636276;PAX2:1.83243528624;HMX1:1.79773256069;CEBPA,B_DDIT3:1.752360965;NR1H4:1.72607833713;ELF1,2,4:1.62461788426;BACH2:1.60772296528;FOS_FOS{B,L1}_JUN{B,D}:1.53408845124;FOXP3:1.53212543748;FOSL2:1.5271933535;FOXN1:1.48698777495;HLF:1.37501689349;RUNX1..3:1.33863382713;NFIL3:1.3210882402;NFE2L1:1.2207289177;IRF1,2:1.17005489482;TLX2:1.16652772664;PITX1..3:1.04277766025;TFCP2:1.03908707452;RXRA_VDR{dimer}:1.01887283764;FOXO1,3,4:1.00901867322;SPZ1:1.00254630869;ATF5_CREB3:0.92160070006;SMAD1..7,9:0.869370599322;BPTF:0.854203444392;ESR1:0.789000425095;IRF7:0.751792625137;PDX1:0.736487361994;TGIF1:0.732231207184;FOX{F1,F2,J1}:0.730020355782;NFKB1_REL_RELA:0.702265295767;HBP1_HMGB_SSRP1_UBTF:0.680888539964;GLI1..3:0.673262561298;HES1:0.664360043875;GATA4:0.658961349267;PPARG:0.607249418755;ATF4:0.581445019921;PAX4:0.574414416791;ZBTB16:0.529009196316;FOX{D1,D2}:0.525052012378;IKZF2:0.508087969584;MAFB:0.505611812448;NR6A1:0.503322810216;FOXP1:0.501427436493;HIF1A:0.474140723651;CREB1:0.469041615439;TOPORS:0.46507152616;HMGA1,2:0.424455162774;RFX2..5_RFXANK_RFXAP:0.375123802257;ESRRA:0.346217350821;NFIX:0.338359134275;PAX1,9:0.233405238109;ALX1:0.22010325853;CDX1,2,4:0.190836532095;RREB1:0.139470891133;RXR{A,B,G}:0.13639231174;EN1,2:0.0994595022178;PRDM1:0.0661536164981;ZNF148:0.0641415000808;STAT2,4,6:0.0515643009562;ATF6:0.0489905873825;NANOG:0.0286087440658;AIRE:0.0214251954338;ATF2:-0.00171099612849;NKX2-2,8:-0.00379778786962;NKX3-2:-0.0176729042971;MYB:-0.0357995342876;ALX4:-0.0403155623475;JUN:-0.0445440988617;NKX6-1,2:-0.100796162989;TFAP4:-0.113178793488;OCT4_SOX2{dimer}:-0.116088363421;AHR_ARNT_ARNT2:-0.163319660205;NKX3-1:-0.184585761157;ZBTB6:-0.18699062322;PATZ1:-0.203824384073;MYFfamily:-0.204590809917;MZF1:-0.268590065263;HNF4A_NR2F1,2:-0.277670601196;POU5F1:-0.279125169337;CUX2:-0.302033332196;TAL1_TCF{3,4,12}:-0.338607714229;DBP:-0.34895387442;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.380551727709;EBF1:-0.391259532569;REST:-0.426587422532;TFAP2{A,C}:-0.435934544498;FOXM1:-0.447070022857;XBP1:-0.460313066405;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.461798068301;HOX{A5,B5}:-0.471417489844;ZIC1..3:-0.518870960142;ZNF238:-0.530808412706;NHLH1,2:-0.573412899167;STAT5{A,B}:-0.583040706753;TBP:-0.585001228572;ARID5B:-0.586526650406;SRF:-0.587145064204;EVI1:-0.603417412746;EGR1..3:-0.606262131087;GATA6:-0.612403680497;MED-1{core}:-0.637000393906;PAX3,7:-0.645722885261;HNF1A:-0.656143812938;STAT1,3:-0.668301970366;UFEwm:-0.67924601845;FOXA2:-0.728816408003;POU1F1:-0.750540592072;GCM1,2:-0.756566132213;ELK1,4_GABP{A,B1}:-0.771660877694;VSX1,2:-0.777856409002;PRRX1,2:-0.794743523771;KLF4:-0.816724885313;LMO2:-0.824915033012;GTF2A1,2:-0.826204975086;MTE{core}:-0.841716724341;T:-0.844104848363;MYOD1:-0.862604106484;ZNF423:-0.863847922358;CRX:-0.864925181974;IKZF1:-0.867391844615;NFATC1..3:-0.872452656603;MEF2{A,B,C,D}:-0.880377155226;ZFP161:-0.891716875583;SP1:-0.907800360631;TFAP2B:-0.912428106271;MTF1:-0.912879886002;HSF1,2:-0.930354776638;SOX5:-0.944300634524;SOX2:-0.953046194836;GZF1:-0.990392576645;PAX5:-1.00789140823;TBX4,5:-1.01871765099;NR3C1:-1.04817303855;PAX8:-1.06085025586;TLX1..3_NFIC{dimer}:-1.06140296436;TEF:-1.06179344186;GTF2I:-1.06458782403;RFX1:-1.06896926693;POU2F1..3:-1.0707440064;TP53:-1.08033914846;POU6F1:-1.08589939456;ZEB1:-1.13558003705;YY1:-1.1414846294;FOX{I1,J2}:-1.14283508211;TFDP1:-1.15503682936;MAZ:-1.15894183218;AR:-1.17281798646;NKX2-3_NKX2-5:-1.23324737798;XCPE1{core}:-1.27570851581;ONECUT1,2:-1.28852761836;BREu{core}:-1.29051103388;HIC1:-1.30425985679;PAX6:-1.30675915096;MYBL2:-1.34317781;SNAI1..3:-1.34705273082;SOX{8,9,10}:-1.397117656;TEAD1:-1.40185947604;NR5A1,2:-1.43077440916;FOXL1:-1.43104143452;E2F1..5:-1.46577502912;ZNF384:-1.47753679867;HOX{A4,D4}:-1.50238312004;RBPJ:-1.50839407571;HAND1,2:-1.51383219132;RORA:-1.52908611207;HOX{A6,A7,B6,B7}:-1.53411854826;FOXQ1:-1.55919586904;HOXA9_MEIS1:-1.64357206776;NKX2-1,4:-1.64582094208;ADNP_IRX_SIX_ZHX:-1.76593990054;NRF1:-1.87786743805;LHX3,4:-1.90864095493;SOX17:-2.01079797026;GFI1B:-2.0438560617;ZNF143:-2.05401752178;NFY{A,B,C}:-2.11162579251;POU3F1..4:-2.1821588068;CDC5L:-2.21847190901;PBX1:-2.22285018429;bHLH_family:-2.23600220868;GFI1:-2.3163434069;LEF1_TCF7_TCF7L1,2:-2.38551759807 | |top_motifs=EP300:2.50671416967;SREBF1,2:2.48136491327;SPI1:2.45408784517;SPIB:2.39664108299;NFE2L2:2.15982073987;FOXD3:2.12517530572;ETS1,2:1.97546976068;NFE2:1.90005914148;DMAP1_NCOR{1,2}_SMARC:1.85449667384;NANOG{mouse}:1.84256636276;PAX2:1.83243528624;HMX1:1.79773256069;CEBPA,B_DDIT3:1.752360965;NR1H4:1.72607833713;ELF1,2,4:1.62461788426;BACH2:1.60772296528;FOS_FOS{B,L1}_JUN{B,D}:1.53408845124;FOXP3:1.53212543748;FOSL2:1.5271933535;FOXN1:1.48698777495;HLF:1.37501689349;RUNX1..3:1.33863382713;NFIL3:1.3210882402;NFE2L1:1.2207289177;IRF1,2:1.17005489482;TLX2:1.16652772664;PITX1..3:1.04277766025;TFCP2:1.03908707452;RXRA_VDR{dimer}:1.01887283764;FOXO1,3,4:1.00901867322;SPZ1:1.00254630869;ATF5_CREB3:0.92160070006;SMAD1..7,9:0.869370599322;BPTF:0.854203444392;ESR1:0.789000425095;IRF7:0.751792625137;PDX1:0.736487361994;TGIF1:0.732231207184;FOX{F1,F2,J1}:0.730020355782;NFKB1_REL_RELA:0.702265295767;HBP1_HMGB_SSRP1_UBTF:0.680888539964;GLI1..3:0.673262561298;HES1:0.664360043875;GATA4:0.658961349267;PPARG:0.607249418755;ATF4:0.581445019921;PAX4:0.574414416791;ZBTB16:0.529009196316;FOX{D1,D2}:0.525052012378;IKZF2:0.508087969584;MAFB:0.505611812448;NR6A1:0.503322810216;FOXP1:0.501427436493;HIF1A:0.474140723651;CREB1:0.469041615439;TOPORS:0.46507152616;HMGA1,2:0.424455162774;RFX2..5_RFXANK_RFXAP:0.375123802257;ESRRA:0.346217350821;NFIX:0.338359134275;PAX1,9:0.233405238109;ALX1:0.22010325853;CDX1,2,4:0.190836532095;RREB1:0.139470891133;RXR{A,B,G}:0.13639231174;EN1,2:0.0994595022178;PRDM1:0.0661536164981;ZNF148:0.0641415000808;STAT2,4,6:0.0515643009562;ATF6:0.0489905873825;NANOG:0.0286087440658;AIRE:0.0214251954338;ATF2:-0.00171099612849;NKX2-2,8:-0.00379778786962;NKX3-2:-0.0176729042971;MYB:-0.0357995342876;ALX4:-0.0403155623475;JUN:-0.0445440988617;NKX6-1,2:-0.100796162989;TFAP4:-0.113178793488;OCT4_SOX2{dimer}:-0.116088363421;AHR_ARNT_ARNT2:-0.163319660205;NKX3-1:-0.184585761157;ZBTB6:-0.18699062322;PATZ1:-0.203824384073;MYFfamily:-0.204590809917;MZF1:-0.268590065263;HNF4A_NR2F1,2:-0.277670601196;POU5F1:-0.279125169337;CUX2:-0.302033332196;TAL1_TCF{3,4,12}:-0.338607714229;DBP:-0.34895387442;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.380551727709;EBF1:-0.391259532569;REST:-0.426587422532;TFAP2{A,C}:-0.435934544498;FOXM1:-0.447070022857;XBP1:-0.460313066405;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.461798068301;HOX{A5,B5}:-0.471417489844;ZIC1..3:-0.518870960142;ZNF238:-0.530808412706;NHLH1,2:-0.573412899167;STAT5{A,B}:-0.583040706753;TBP:-0.585001228572;ARID5B:-0.586526650406;SRF:-0.587145064204;EVI1:-0.603417412746;EGR1..3:-0.606262131087;GATA6:-0.612403680497;MED-1{core}:-0.637000393906;PAX3,7:-0.645722885261;HNF1A:-0.656143812938;STAT1,3:-0.668301970366;UFEwm:-0.67924601845;FOXA2:-0.728816408003;POU1F1:-0.750540592072;GCM1,2:-0.756566132213;ELK1,4_GABP{A,B1}:-0.771660877694;VSX1,2:-0.777856409002;PRRX1,2:-0.794743523771;KLF4:-0.816724885313;LMO2:-0.824915033012;GTF2A1,2:-0.826204975086;MTE{core}:-0.841716724341;T:-0.844104848363;MYOD1:-0.862604106484;ZNF423:-0.863847922358;CRX:-0.864925181974;IKZF1:-0.867391844615;NFATC1..3:-0.872452656603;MEF2{A,B,C,D}:-0.880377155226;ZFP161:-0.891716875583;SP1:-0.907800360631;TFAP2B:-0.912428106271;MTF1:-0.912879886002;HSF1,2:-0.930354776638;SOX5:-0.944300634524;SOX2:-0.953046194836;GZF1:-0.990392576645;PAX5:-1.00789140823;TBX4,5:-1.01871765099;NR3C1:-1.04817303855;PAX8:-1.06085025586;TLX1..3_NFIC{dimer}:-1.06140296436;TEF:-1.06179344186;GTF2I:-1.06458782403;RFX1:-1.06896926693;POU2F1..3:-1.0707440064;TP53:-1.08033914846;POU6F1:-1.08589939456;ZEB1:-1.13558003705;YY1:-1.1414846294;FOX{I1,J2}:-1.14283508211;TFDP1:-1.15503682936;MAZ:-1.15894183218;AR:-1.17281798646;NKX2-3_NKX2-5:-1.23324737798;XCPE1{core}:-1.27570851581;ONECUT1,2:-1.28852761836;BREu{core}:-1.29051103388;HIC1:-1.30425985679;PAX6:-1.30675915096;MYBL2:-1.34317781;SNAI1..3:-1.34705273082;SOX{8,9,10}:-1.397117656;TEAD1:-1.40185947604;NR5A1,2:-1.43077440916;FOXL1:-1.43104143452;E2F1..5:-1.46577502912;ZNF384:-1.47753679867;HOX{A4,D4}:-1.50238312004;RBPJ:-1.50839407571;HAND1,2:-1.51383219132;RORA:-1.52908611207;HOX{A6,A7,B6,B7}:-1.53411854826;FOXQ1:-1.55919586904;HOXA9_MEIS1:-1.64357206776;NKX2-1,4:-1.64582094208;ADNP_IRX_SIX_ZHX:-1.76593990054;NRF1:-1.87786743805;LHX3,4:-1.90864095493;SOX17:-2.01079797026;GFI1B:-2.0438560617;ZNF143:-2.05401752178;NFY{A,B,C}:-2.11162579251;POU3F1..4:-2.1821588068;CDC5L:-2.21847190901;PBX1:-2.22285018429;bHLH_family:-2.23600220868;GFI1:-2.3163434069;LEF1_TCF7_TCF7L1,2:-2.38551759807 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11863-125A9;search_select_hide=table117:FF:11863-125A9 | |||
}} | }} |
Latest revision as of 18:24, 4 June 2020
Name: | CD14+ monocytes - mock treated, donor1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13468 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13468
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13468
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.109 |
10 | 10 | 0.0192 |
100 | 100 | 0.753 |
101 | 101 | 0.6 |
102 | 102 | 0.47 |
103 | 103 | 0.24 |
104 | 104 | 0.679 |
105 | 105 | 0.392 |
106 | 106 | 0.00132 |
107 | 107 | 0.147 |
108 | 108 | 0.899 |
109 | 109 | 0.173 |
11 | 11 | 0.128 |
110 | 110 | 0.299 |
111 | 111 | 0.0273 |
112 | 112 | 0.22 |
113 | 113 | 0.57 |
114 | 114 | 0.0125 |
115 | 115 | 0.381 |
116 | 116 | 0.629 |
117 | 117 | 0.0283 |
118 | 118 | 0.184 |
119 | 119 | 0.132 |
12 | 12 | 0.429 |
120 | 120 | 0.888 |
121 | 121 | 0.703 |
122 | 122 | 0.814 |
123 | 123 | 0.0154 |
124 | 124 | 0.599 |
125 | 125 | 0.395 |
126 | 126 | 0.281 |
127 | 127 | 0.233 |
128 | 128 | 0.0194 |
129 | 129 | 0.518 |
13 | 13 | 0.2 |
130 | 130 | 0.123 |
131 | 131 | 0.666 |
132 | 132 | 0.144 |
133 | 133 | 0.992 |
134 | 134 | 0.521 |
135 | 135 | 0.337 |
136 | 136 | 0.996 |
137 | 137 | 0.0047 |
138 | 138 | 0.139 |
139 | 139 | 0.0248 |
14 | 14 | 0.383 |
140 | 140 | 0.0913 |
141 | 141 | 0.436 |
142 | 142 | 0.901 |
143 | 143 | 0.0339 |
144 | 144 | 0.772 |
145 | 145 | 0.353 |
146 | 146 | 0.47 |
147 | 147 | 0.327 |
148 | 148 | 0.018 |
149 | 149 | 0.499 |
15 | 15 | 0.13 |
150 | 150 | 0.468 |
151 | 151 | 0.284 |
152 | 152 | 0.0856 |
153 | 153 | 0.309 |
154 | 154 | 0.468 |
155 | 155 | 0.283 |
156 | 156 | 0.791 |
157 | 157 | 0.37 |
158 | 158 | 0.114 |
159 | 159 | 0.932 |
16 | 16 | 0.312 |
160 | 160 | 0.45 |
161 | 161 | 0.686 |
162 | 162 | 0.576 |
163 | 163 | 0.531 |
164 | 164 | 0.0991 |
165 | 165 | 0.139 |
166 | 166 | 0.472 |
167 | 167 | 0.214 |
168 | 168 | 0.562 |
169 | 169 | 0.0075 |
17 | 17 | 0.167 |
18 | 18 | 0.184 |
19 | 19 | 0.196 |
2 | 2 | 0.862 |
20 | 20 | 0.391 |
21 | 21 | 0.204 |
22 | 22 | 0.185 |
23 | 23 | 0.0768 |
24 | 24 | 0.27 |
25 | 25 | 0.38 |
26 | 26 | 0.0232 |
27 | 27 | 0.748 |
28 | 28 | 0.465 |
29 | 29 | 0.246 |
3 | 3 | 0.0463 |
30 | 30 | 0.568 |
31 | 31 | 0.67 |
32 | 32 | 0.761 |
33 | 33 | 0.483 |
34 | 34 | 0.345 |
35 | 35 | 0.141 |
36 | 36 | 0.196 |
37 | 37 | 0.0699 |
38 | 38 | 0.316 |
39 | 39 | 0.661 |
4 | 4 | 0.923 |
40 | 40 | 0.184 |
41 | 41 | 0.0238 |
42 | 42 | 0.351 |
43 | 43 | 0.0481 |
44 | 44 | 0.691 |
45 | 45 | 0.713 |
46 | 46 | 0.0978 |
47 | 47 | 0.389 |
48 | 48 | 0.334 |
49 | 49 | 0.101 |
5 | 5 | 0.203 |
50 | 50 | 0.926 |
51 | 51 | 0.312 |
52 | 52 | 0.317 |
53 | 53 | 0.223 |
54 | 54 | 0.255 |
55 | 55 | 0.291 |
56 | 56 | 0.599 |
57 | 57 | 0.68 |
58 | 58 | 0.101 |
59 | 59 | 0.114 |
6 | 6 | 0.515 |
60 | 60 | 0.0443 |
61 | 61 | 0.391 |
62 | 62 | 0.0369 |
63 | 63 | 0.38 |
64 | 64 | 0.414 |
65 | 65 | 0.209 |
66 | 66 | 0.239 |
67 | 67 | 0.59 |
68 | 68 | 0.892 |
69 | 69 | 0.734 |
7 | 7 | 0.309 |
70 | 70 | 0.0107 |
71 | 71 | 0.0298 |
72 | 72 | 0.252 |
73 | 73 | 0.0806 |
74 | 74 | 0.0922 |
75 | 75 | 0.0598 |
76 | 76 | 0.259 |
77 | 77 | 0.319 |
78 | 78 | 0.0906 |
79 | 79 | 0.0398 |
8 | 8 | 0.258 |
80 | 80 | 0.328 |
81 | 81 | 0.324 |
82 | 82 | 0.0751 |
83 | 83 | 0.483 |
84 | 84 | 0.532 |
85 | 85 | 0.0122 |
86 | 86 | 0.0516 |
87 | 87 | 0.436 |
88 | 88 | 0.449 |
89 | 89 | 0.311 |
9 | 9 | 0.347 |
90 | 90 | 0.0538 |
91 | 91 | 0.316 |
92 | 92 | 0.158 |
93 | 93 | 0.429 |
94 | 94 | 0.0288 |
95 | 95 | 0.256 |
96 | 96 | 0.327 |
97 | 97 | 0.975 |
98 | 98 | 0.149 |
99 | 99 | 0.185 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13468
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011101 human CD14-positive monocytes - mock treated sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000343 (control treatment sample)
0000350 (experimentally modified sample)
0011101 (human CD14-positive monocytes - mock treated sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)