FF:12627-134E8: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00004802 | |DRA_sample_Accession=CAGE@SAMD00004802 | ||
|accession_numbers=CAGE;DRX008583;DRR009455;DRZ000880;DRZ002265 | |accession_numbers=CAGE;DRX008583;DRR009455;DRZ000880;DRZ002265;DRZ012230;DRZ013615 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000061,UBERON:0000465,UBERON:0001062 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000061,UBERON:0000465,UBERON:0001062 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002321,CL:0000075,CL:0000066,CL:0002371,CL:0000325,CL:0000147,CL:0000710,CL:0000255,CL:0002077,CL:0000034,CL:0000148,CL:0002322 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002321,CL:0000075,CL:0000066,CL:0002371,CL:0000325,CL:0000147,CL:0000710,CL:0000255,CL:0002077,CL:0000034,CL:0000148,CL:0002322 | ||
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|donor= biol_rep1 (H9EB-1 d0) | |donor= biol_rep1 (H9EB-1 d0) | ||
|expression_enrichment_score=chr20:31350184..31350200,+!p1@DNMT3B!2.50!628.03!DNMT3B;;chr10:135043702..135043729,+!p1@UTF1!2.16!144.66!UTF1;;chr3:181429704..181429722,+!p1@SOX2!2.14!136.41!SOX2;;chr8:145701192..145701241,-!p1@FOXH1!2.07!115.38!FOXH1;;chr6:31138439..31138475,-!p1@POU5F1!2.03!106.09!POU5F1;;chr8:73921136..73921151,+!p2@TERF1!2.00!146.40!TERF1;;chr4:188916918..188916942,+!p1@ZFP42!1.93!83.66!ZFP42;;chr1:6304233..6304243,+!p1@HES3!1.92!82.27!HES3;;chr5:153857778..153857794,-!p1@HAND1!1.80!62.63!HAND1;;chr16:3149278..3149305,-!p1@ZSCAN10!1.76!57.05!ZSCAN10;;chr8:70983476..70983493,-!p1@PRDM14!1.68!46.71!PRDM14;;chrX:136648279..136648295,+!p1@ZIC3!1.65!43.46!ZIC3;;chr2:16080659..16080685,+!p1@MYCN!1.61!39.74!MYCN;;chr2:5832508..5832524,+!p1@SOX11!1.61!39.62!SOX11;;chr11:63684602..63684664,-!p1@RCOR2!1.60!74.83!RCOR2;;chr3:181429741..181429767,+!p2@SOX2!1.58!37.07!SOX2;;chr13:100634031..100634045,+!p1@ZIC2!1.57!36.48!ZIC2;;chr13:100623375..100623425,-!p1@ZIC5!1.56!34.97!ZIC5;;chr9:114287433..114287513,+!p1@ZNF483!1.54!84.59!ZNF483;;chr14:57272369..57272391,-!p2@OTX2!1.53!32.53!OTX2;;chr20:50418972..50419029,-!p1@SALL4!1.52!31.84!SALL4;;chr6:15246200..15246214,+!p2@JARID2!1.46!74.13!JARID2;;chr14:22005197..22005261,-!p3@SALL2!1.46!28.00!SALL2;;chr17:7493405..7493419,-!p1@SOX15!1.46!27.89!SOX15;;chr2:25475120..25475176,-!p2@DNMT3A!1.44!35.67!DNMT3A;;chr19:20188776..20188826,+!p1@ZNF90!1.42!66.81!ZNF90;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.42!25.10!ZBED1;;chr12:7941989..7942014,+!p1@NANOG!1.39!23.82!NANOG;;chr3:170076314..170076334,+!p2@SKIL!1.36!28.35!SKIL;;chr6:137815524..137815537,-!p1@OLIG3!1.36!22.08!OLIG3;;chr3:185797712..185797746,-!p6@ETV5!1.36!21.84!ETV5;;chr10:135043493..135043510,+!p2@UTF1!1.36!21.73!UTF1;;chr1:164528687..164528711,+!p6@PBX1!1.35!24.98!PBX1;;chr2:16081912..16081931,+!p2@MYCN!1.35!21.61!MYCN;;chrX:136648643..136648711,+!p2@ZIC3!1.35!21.61!ZIC3;;chr2:25475094..25475112,-!p3@DNMT3A!1.35!21.26!DNMT3A;;chr3:57234000..57234014,-!p1@HESX1!1.35!21.26!HESX1;;chr20:35202909..35202963,+!p2@TGIF2,p3@C20orf24!1.32!28.24!TGIF2;;chr1:201979703..201979721,+!p2@ELF3!1.31!19.52!ELF3;;chr8:70983443..70983460,-!p2@PRDM14!1.31!19.40!PRDM14;;chr19:45579725..45579743,-!p1@ZNF296!1.27!77.27!ZNF296;;chr8:145701166..145701187,-!p2@FOXH1!1.27!17.78!FOXH1;;chr20:50418128..50418147,-!p2@SALL4!1.27!17.55!SALL4;;chr4:299227..299272,-!p1@ZNF732!1.27!17.43!ZNF732;;chr20:55204351..55204377,+!p1@TFAP2C!1.26!21.73!TFAP2C;;chr5:2751762..2751784,-!p1@IRX2!1.25!16.96!IRX2;;chr8:73921067..73921078,+!p3@TERF1!1.20!23.24!TERF1;;chr19:46800289..46800327,+!p2@HIF3A!1.20!14.87!HIF3A;;chr13:100634004..100634025,+!p2@ZIC2!1.20!14.87!ZIC2;;chr8:55370487..55370503,+!p1@SOX17!1.19!14.41!SOX17;;chr1:201979743..201979762,+!p1@ELF3!1.18!14.06!ELF3;;chr12:66218836..66218888,+!p1@HMGA2!1.16!124.21!HMGA2;;chr10:70320074..70320106,+!p1@TET1!1.16!27.31!TET1;;chr14:21994337..21994442,-!p1@SALL2!1.15!36.60!SALL2;;chr19:46367576..46367592,+!p1@FOXA3!1.13!12.55!FOXA3;;chr2:88752207..88752218,-!p1@FOXI3!1.13!12.55!FOXI3;;chr2:16082155..16082169,+!p3@MYCN!1.12!12.32!MYCN;;chr5:2751785..2751808,-!p2@IRX2!1.12!12.20!IRX2;;chr1:63788229..63788250,+!p1@FOXD3!1.10!11.62!FOXD3;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!1.09!24.52!SOHLH2;;chr9:127533519..127533573,-!p2@NR6A1!1.09!13.59!NR6A1;;chr8:70983506..70983522,-!p3@PRDM14!1.09!11.39!PRDM14;;chr3:48282587..48282603,+!p1@ZNF589!1.08!49.85!ZNF589;;chr18:56531584..56531646,+!p4@ZNF532!1.08!14.52!ZNF532;;chr19:23299814..23299844,+!p1@ZNF730!1.08!13.59!ZNF730;;chr10:135122906..135122921,+!p4@ZNF511!1.08!10.92!ZNF511;;chr12:19592405..19592492,+!p2@AEBP2!1.07!93.54!AEBP2;;chr20:50419055..50419066,-!p3@SALL4!1.07!10.81!SALL4;;chr2:42795745..42795824,+!p1@MTA3!1.06!98.18!MTA3;;chr17:41622765..41622821,-!p2@ETV4!1.06!15.92!ETV4;;chr10:126138597..126138612,-!p1@NKX1-2!1.06!10.46!NKX1-2;;chr14:57277178..57277203,-!p1@OTX2!1.06!10.46!OTX2;;chr1:226411361..226411366,+!p1@MIXL1!1.06!10.46!MIXL1;;chr6:126070769..126070801,+!p1@HEY2!1.05!11.85!HEY2;;chr3:71355163..71355209,-!p5@FOXP1!1.04!13.94!FOXP1;;chr8:37963466..37963506,+!p3@ASH2L!1.04!12.67!ASH2L;;chr2:223163706..223163730,-!p1@PAX3!1.04!9.88!PAX3;;chr17:47892398..47892407,+!p2@KAT7!1.04!9.88!KAT7;;chrX:136648297..136648319,+!p3@ZIC3!1.04!9.88!ZIC3;;chr4:26322267..26322334,+!p3@RBPJ!1.03!23.59!RBPJ;;chr12:66218183..66218209,+!p4@HMGA2!1.03!19.06!HMGA2;;chr2:5832493..5832507,+!p2@SOX11!1.03!9.76!SOX11;;chr9:86594530..86594564,-!p@chr9:86594530..86594564,-!1.02!36.72!HNRPK;;chrX:139587228..139587234,-!p1@SOX3!1.02!9.53!SOX3;;chr2:171571827..171571853,+!p1@SP5!1.02!9.41!SP5;;chr17:46132044..46132080,+!p4@NFE2L1!1.02!9.41!NFE2L1;;chr12:66218598..66218645,+!p2@HMGA2!1.01!43.69!HMGA2;;chr18:56940611..56940660,-!p1@RAX!1.01!9.30!RAX;;chr4:174451370..174451387,-!p1@HAND2!1.01!9.18!HAND2;;chr19:23433144..23433204,-!p1@ZNF724P!1.00!41.25!ZNF724P;;chr1:2461692..2461710,-!p1@HES5!1.00!9.06!HES5;;chr11:128457446..128457461,-!p4@ETS1!1.00!8.95!ETS1;;chr7:14028743..14028799,-!p3@ETV1!0.99!11.04!ETV1;;chr13:100638100..100638115,+!p4@ZIC2!0.99!8.83!ZIC2;;chr19:20011775..20011800,+!p2@ZNF93!0.97!15.22!ZNF93;;chr12:66218255..66218304,+!p3@HMGA2!0.96!22.43!HMGA2;;chr18:76740152..76740186,+!p2@SALL3!0.96!8.13!SALL3;;chr16:51185363..51185381,-!p4@SALL1!0.96!8.02!SALL1;;chr19:47523058..47523114,+!p1@NPAS1!0.96!8.02!NPAS1;;chr19:50922187..50922204,+!p1@SPIB!0.96!8.02!SPIB;;chr1:204042233..204042249,+!p1@SOX13!0.95!51.59!SOX13;;chr9:127358120..127358170,-!p3@NR6A1!0.95!7.90!NR6A1;;chr6:21597765..21597779,+!p2@SOX4!0.94!65.30!SOX4;;chr8:37963407..37963454,+!p2@ASH2L!0.94!23.70!ASH2L;;chr12:66218378..66218401,+!p6@HMGA2!0.94!12.32!HMGA2;;chr4:111544219..111544240,-!p1@PITX2!0.94!7.78!PITX2;;chr19:3574330..3574393,+!p2@HMG20B!0.94!7.78!HMG20B;;chr15:57511609..57511651,+!p2@TCF12!0.93!13.01!TCF12;;chr1:209979467..209979494,-!p1@IRF6!0.93!8.60!IRF6;;chr1:38512457..38512474,-!p1@POU3F1!0.93!8.37!POU3F1;;chr19:23299851..23299880,+!p2@ZNF730!0.93!7.55!ZNF730;;chr22:38380543..38380569,-!p1@SOX10!0.92!7.32!SOX10;;chr1:151032922..151032951,+!p2@MLLT11!0.91!12.08!MLLT11;;chr12:66218573..66218596,+!p7@HMGA2!0.91!10.81!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!0.91!10.46!HMGA2;;chr3:170076223..170076242,+!p6@SKIL!0.91!8.13!SKIL;;chr12:66218152..66218174,+!p10@HMGA2!0.91!7.78!HMGA2;;chr2:85360499..85360598,+!p1@TCF7L1!0.90!40.44!TCF7L1;;chr6:1312325..1312340,+!p1@FOXQ1!0.90!11.50!FOXQ1;;chr16:29818199..29818216,+!p11@MAZ!0.89!11.50!MAZ;;chr12:54785074..54785122,-!p2@ZNF385A!0.89!10.57!ZNF385A;;chr17:41622925..41622976,-!p3@ETV4!0.89!10.34!ETV4;;chr17:7197911..7197964,-!p1@YBX2!0.89!6.74!YBX2;;chr10:135043690..135043701,+!p4@UTF1!0.89!6.74!UTF1;;chr19:20011744..20011770,+!p1@ZNF93!0.88!27.07!ZNF93;;chr15:53082521..53082549,-!p1@ONECUT1!0.88!6.51!ONECUT1;;chr13:100634130..100634143,+!p3@ZIC2!0.88!6.51!ZIC2;;chr7:26191809..26191890,+!p1@NFE2L3!0.87!33.46!NFE2L3;;chr6:31869828..31869880,-!p1@ZBTB12!0.87!12.55!ZBTB12;;chr18:56530136..56530199,+!p3@ZNF532!0.87!9.88!ZNF532;;chr16:51185573..51185593,-!p3@SALL1!0.87!6.39!SALL1;;chr19:23941680..23941704,-!p1@ZNF681!0.86!19.17!ZNF681;;chr2:121493425..121493474,+!p1@GLI2!0.86!14.41!GLI2;;chr19:20150268..20150298,-!p2@ZNF682!0.86!12.08!ZNF682;;chr8:70983462..70983471,-!p4@PRDM14!0.86!6.27!PRDM14;;chr14:22005343..22005364,-!p5@SALL2!0.86!6.27!SALL2;;chr17:41623692..41623715,-!p1@ETV4!0.85!27.42!ETV4;;chr11:31825588..31825613,-!p8@PAX6!0.85!6.16!PAX6;;chr12:66218420..66218439,+!p12@HMGA2!0.85!6.16!HMGA2;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!0.85!6.04!MEF2B;;chr6:21593973..21593988,+!p1@SOX4!0.84!225.30!SOX4;;chr6:19837592..19837621,+!p1@ID4!0.84!38.23!ID4;;chr14:21566540..21566580,-!p2@ZNF219!0.84!8.25!ZNF219;;chr6:50786591..50786614,+!p1@TFAP2B!0.84!5.93!TFAP2B;;chr19:20278012..20278034,+!p1@ZNF486!0.83!51.82!ZNF486;;chr14:55493763..55493824,-!p1@WDHD1!0.83!46.71!WDHD1;;chr12:3068544..3068597,+!p1@TEAD4!0.83!37.30!TEAD4;;chr19:47538560..47538591,+!p2@NPAS1!0.83!5.81!NPAS1;;chr12:7941942..7941949,+!p3@NANOG!0.83!5.69!NANOG;;chr2:60780753..60780800,-!p1@BCL11A!0.82!29.51!BCL11A;;chr2:166326200..166326216,+!p1@CSRNP3!0.82!8.48!CSRNP3;;chr7:35293685..35293718,-!p1@TBX20!0.82!5.58!TBX20;;chr12:50479109..50479146,+!p2@SMARCD1!0.81!101.44!SMARCD1;;chr19:22034809..22034878,-!p2@ZNF43!0.81!20.45!ZNF43;;chr17:41623009..41623053,-!p4@ETV4!0.81!9.06!ETV4;;chr8:128428066..128428078,+!p1@POU5F1B!0.81!5.46!POU5F1B;;chr1:93544791..93544807,+!p2@MTF2!0.80!8.48!MTF2;;chr1:247171316..247171336,-!p3@ZNF695!0.80!8.25!ZNF695;;chr5:174151612..174151633,+!p2@MSX2!0.80!5.34!MSX2;;chr16:51185318..51185348,-!p2@SALL1!0.80!5.34!SALL1;;chr3:52002412..52002433,-!p7@PCBP4!0.80!5.34!PCBP4;;chr19:20959098..20959117,+!p1@ZNF66P!0.79!23.24!ZNF66P;;chr5:124084493..124084524,-!p2@ZNF608!0.79!12.08!ZNF608;;chr19:54024251..54024305,+!p4@ZNF331!0.79!8.71!ZNF331;;chr9:127533582..127533615,-!p1@NR6A1!0.79!8.02!NR6A1;;chr19:49864746..49864780,-!p2@TEAD2!0.79!7.32!TEAD2;;chr6:15245797..15245818,+!p8@JARID2!0.79!6.39!JARID2;;chr8:86089627..86089653,+!p3@E2F5!0.79!5.93!E2F5;;chr8:102504651..102504683,+!p1@GRHL2!0.79!5.23!GRHL2;;chr8:11561684..11561751,+!p1@GATA4!0.79!5.23!GATA4;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.79!5.23!SEBOX;;chr14:60975883..60975911,+!p1@SIX6!0.79!5.11!SIX6;;chr14:21994449..21994524,-!p2@SALL2!0.78!16.03!SALL2;;chr19:925727..925784,+!p3@ARID3A!0.78!11.27!ARID3A;;chr6:134210243..134210257,+!p1@TCF21!0.78!5.00!TCF21;;chr2:16080635..16080650,+!p4@MYCN!0.78!5.00!MYCN;;chr2:88752231..88752245,-!p2@FOXI3!0.78!5.00!FOXI3;;chr19:58220517..58220583,-!p1@ZNF154!0.77!16.73!ZNF154;;chrX:84499081..84499115,+!p2@ZNF711!0.77!7.44!ZNF711;;chr20:30193083..30193098,+!p1@ID1!0.76!425.73!ID1;;chr12:7079780..7079791,-!p2@PHB2!0.76!26.96!PHB2;;chr17:46608354..46608385,-!p1@HOXB1!0.76!4.76!HOXB1;;chr7:64363638..64363667,+!p1@ZNF273!0.75!25.45!ZNF273;;chr16:29818160..29818188,+!p6@MAZ!0.75!23.94!MAZ;;chr6:15246217..15246228,+!p3@JARID2!0.75!8.71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| |expression_enrichment_score=chr20:31350184..31350200,+!p1@DNMT3B!2.50!628.03!DNMT3B;;chr10:135043702..135043729,+!p1@UTF1!2.16!144.66!UTF1;;chr3:181429704..181429722,+!p1@SOX2!2.14!136.41!SOX2;;chr8:145701192..145701241,-!p1@FOXH1!2.07!115.38!FOXH1;;chr6:31138439..31138475,-!p1@POU5F1!2.03!106.09!POU5F1;;chr8:73921136..73921151,+!p2@TERF1!2.00!146.40!TERF1;;chr4:188916918..188916942,+!p1@ZFP42!1.93!83.66!ZFP42;;chr1:6304233..6304243,+!p1@HES3!1.92!82.27!HES3;;chr5:153857778..153857794,-!p1@HAND1!1.80!62.63!HAND1;;chr16:3149278..3149305,-!p1@ZSCAN10!1.76!57.05!ZSCAN10;;chr8:70983476..70983493,-!p1@PRDM14!1.68!46.71!PRDM14;;chrX:136648279..136648295,+!p1@ZIC3!1.65!43.46!ZIC3;;chr2:16080659..16080685,+!p1@MYCN!1.61!39.74!MYCN;;chr2:5832508..5832524,+!p1@SOX11!1.61!39.62!SOX11;;chr11:63684602..63684664,-!p1@RCOR2!1.60!74.83!RCOR2;;chr3:181429741..181429767,+!p2@SOX2!1.58!37.07!SOX2;;chr13:100634031..100634045,+!p1@ZIC2!1.57!36.48!ZIC2;;chr13:100623375..100623425,-!p1@ZIC5!1.56!34.97!ZIC5;;chr9:114287433..114287513,+!p1@ZNF483!1.54!84.59!ZNF483;;chr14:57272369..57272391,-!p2@OTX2!1.53!32.53!OTX2;;chr20:50418972..50419029,-!p1@SALL4!1.52!31.84!SALL4;;chr6:15246200..15246214,+!p2@JARID2!1.46!74.13!JARID2;;chr14:22005197..22005261,-!p3@SALL2!1.46!28.00!SALL2;;chr17:7493405..7493419,-!p1@SOX15!1.46!27.89!SOX15;;chr2:25475120..25475176,-!p2@DNMT3A!1.44!35.67!DNMT3A;;chr19:20188776..20188826,+!p1@ZNF90!1.42!66.81!ZNF90;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.42!25.10!ZBED1;;chr12:7941989..7942014,+!p1@NANOG!1.39!23.82!NANOG;;chr3:170076314..170076334,+!p2@SKIL!1.36!28.35!SKIL;;chr6:137815524..137815537,-!p1@OLIG3!1.36!22.08!OLIG3;;chr3:185797712..185797746,-!p6@ETV5!1.36!21.84!ETV5;;chr10:135043493..135043510,+!p2@UTF1!1.36!21.73!UTF1;;chr1:164528687..164528711,+!p6@PBX1!1.35!24.98!PBX1;;chr2:16081912..16081931,+!p2@MYCN!1.35!21.61!MYCN;;chrX:136648643..136648711,+!p2@ZIC3!1.35!21.61!ZIC3;;chr2:25475094..25475112,-!p3@DNMT3A!1.35!21.26!DNMT3A;;chr3:57234000..57234014,-!p1@HESX1!1.35!21.26!HESX1;;chr20:35202909..35202963,+!p2@TGIF2,p3@C20orf24!1.32!28.24!TGIF2;;chr1:201979703..201979721,+!p2@ELF3!1.31!19.52!ELF3;;chr8:70983443..70983460,-!p2@PRDM14!1.31!19.40!PRDM14;;chr19:45579725..45579743,-!p1@ZNF296!1.27!77.27!ZNF296;;chr8:145701166..145701187,-!p2@FOXH1!1.27!17.78!FOXH1;;chr20:50418128..50418147,-!p2@SALL4!1.27!17.55!SALL4;;chr4:299227..299272,-!p1@ZNF732!1.27!17.43!ZNF732;;chr20:55204351..55204377,+!p1@TFAP2C!1.26!21.73!TFAP2C;;chr5:2751762..2751784,-!p1@IRX2!1.25!16.96!IRX2;;chr8:73921067..73921078,+!p3@TERF1!1.20!23.24!TERF1;;chr19:46800289..46800327,+!p2@HIF3A!1.20!14.87!HIF3A;;chr13:100634004..100634025,+!p2@ZIC2!1.20!14.87!ZIC2;;chr8:55370487..55370503,+!p1@SOX17!1.19!14.41!SOX17;;chr1:201979743..201979762,+!p1@ELF3!1.18!14.06!ELF3;;chr12:66218836..66218888,+!p1@HMGA2!1.16!124.21!HMGA2;;chr10:70320074..70320106,+!p1@TET1!1.16!27.31!TET1;;chr14:21994337..21994442,-!p1@SALL2!1.15!36.60!SALL2;;chr19:46367576..46367592,+!p1@FOXA3!1.13!12.55!FOXA3;;chr2:88752207..88752218,-!p1@FOXI3!1.13!12.55!FOXI3;;chr2:16082155..16082169,+!p3@MYCN!1.12!12.32!MYCN;;chr5:2751785..2751808,-!p2@IRX2!1.12!12.20!IRX2;;chr1:63788229..63788250,+!p1@FOXD3!1.10!11.62!FOXD3;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!1.09!24.52!SOHLH2;;chr9:127533519..127533573,-!p2@NR6A1!1.09!13.59!NR6A1;;chr8:70983506..70983522,-!p3@PRDM14!1.09!11.39!PRDM14;;chr3:48282587..48282603,+!p1@ZNF589!1.08!49.85!ZNF589;;chr18:56531584..56531646,+!p4@ZNF532!1.08!14.52!ZNF532;;chr19:23299814..23299844,+!p1@ZNF730!1.08!13.59!ZNF730;;chr10:135122906..135122921,+!p4@ZNF511!1.08!10.92!ZNF511;;chr12:19592405..19592492,+!p2@AEBP2!1.07!93.54!AEBP2;;chr20:50419055..50419066,-!p3@SALL4!1.07!10.81!SALL4;;chr2:42795745..42795824,+!p1@MTA3!1.06!98.18!MTA3;;chr17:41622765..41622821,-!p2@ETV4!1.06!15.92!ETV4;;chr10:126138597..126138612,-!p1@NKX1-2!1.06!10.46!NKX1-2;;chr14:57277178..57277203,-!p1@OTX2!1.06!10.46!OTX2;;chr1:226411361..226411366,+!p1@MIXL1!1.06!10.46!MIXL1;;chr6:126070769..126070801,+!p1@HEY2!1.05!11.85!HEY2;;chr3:71355163..71355209,-!p5@FOXP1!1.04!13.94!FOXP1;;chr8:37963466..37963506,+!p3@ASH2L!1.04!12.67!ASH2L;;chr2:223163706..223163730,-!p1@PAX3!1.04!9.88!PAX3;;chr17:47892398..47892407,+!p2@KAT7!1.04!9.88!KAT7;;chrX:136648297..136648319,+!p3@ZIC3!1.04!9.88!ZIC3;;chr4:26322267..26322334,+!p3@RBPJ!1.03!23.59!RBPJ;;chr12:66218183..66218209,+!p4@HMGA2!1.03!19.06!HMGA2;;chr2:5832493..5832507,+!p2@SOX11!1.03!9.76!SOX11;;chr9:86594530..86594564,-!p@chr9:86594530..86594564,-!1.02!36.72!HNRPK;;chrX:139587228..139587234,-!p1@SOX3!1.02!9.53!SOX3;;chr2:171571827..171571853,+!p1@SP5!1.02!9.41!SP5;;chr17:46132044..46132080,+!p4@NFE2L1!1.02!9.41!NFE2L1;;chr12:66218598..66218645,+!p2@HMGA2!1.01!43.69!HMGA2;;chr18:56940611..56940660,-!p1@RAX!1.01!9.30!RAX;;chr4:174451370..174451387,-!p1@HAND2!1.01!9.18!HAND2;;chr19:23433144..23433204,-!p1@ZNF724P!1.00!41.25!ZNF724P;;chr1:2461692..2461710,-!p1@HES5!1.00!9.06!HES5;;chr11:128457446..128457461,-!p4@ETS1!1.00!8.95!ETS1;;chr7:14028743..14028799,-!p3@ETV1!0.99!11.04!ETV1;;chr13:100638100..100638115,+!p4@ZIC2!0.99!8.83!ZIC2;;chr19:20011775..20011800,+!p2@ZNF93!0.97!15.22!ZNF93;;chr12:66218255..66218304,+!p3@HMGA2!0.96!22.43!HMGA2;;chr18:76740152..76740186,+!p2@SALL3!0.96!8.13!SALL3;;chr16:51185363..51185381,-!p4@SALL1!0.96!8.02!SALL1;;chr19:47523058..47523114,+!p1@NPAS1!0.96!8.02!NPAS1;;chr19:50922187..50922204,+!p1@SPIB!0.96!8.02!SPIB;;chr1:204042233..204042249,+!p1@SOX13!0.95!51.59!SOX13;;chr9:127358120..127358170,-!p3@NR6A1!0.95!7.90!NR6A1;;chr6:21597765..21597779,+!p2@SOX4!0.94!65.30!SOX4;;chr8:37963407..37963454,+!p2@ASH2L!0.94!23.70!ASH2L;;chr12:66218378..66218401,+!p6@HMGA2!0.94!12.32!HMGA2;;chr4:111544219..111544240,-!p1@PITX2!0.94!7.78!PITX2;;chr19:3574330..3574393,+!p2@HMG20B!0.94!7.78!HMG20B;;chr15:57511609..57511651,+!p2@TCF12!0.93!13.01!TCF12;;chr1:209979467..209979494,-!p1@IRF6!0.93!8.60!IRF6;;chr1:38512457..38512474,-!p1@POU3F1!0.93!8.37!POU3F1;;chr19:23299851..23299880,+!p2@ZNF730!0.93!7.55!ZNF730;;chr22:38380543..38380569,-!p1@SOX10!0.92!7.32!SOX10;;chr1:151032922..151032951,+!p2@MLLT11!0.91!12.08!MLLT11;;chr12:66218573..66218596,+!p7@HMGA2!0.91!10.81!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!0.91!10.46!HMGA2;;chr3:170076223..170076242,+!p6@SKIL!0.91!8.13!SKIL;;chr12:66218152..66218174,+!p10@HMGA2!0.91!7.78!HMGA2;;chr2:85360499..85360598,+!p1@TCF7L1!0.90!40.44!TCF7L1;;chr6:1312325..1312340,+!p1@FOXQ1!0.90!11.50!FOXQ1;;chr16:29818199..29818216,+!p11@MAZ!0.89!11.50!MAZ;;chr12:54785074..54785122,-!p2@ZNF385A!0.89!10.57!ZNF385A;;chr17:41622925..41622976,-!p3@ETV4!0.89!10.34!ETV4;;chr17:7197911..7197964,-!p1@YBX2!0.89!6.74!YBX2;;chr10:135043690..135043701,+!p4@UTF1!0.89!6.74!UTF1;;chr19:20011744..20011770,+!p1@ZNF93!0.88!27.07!ZNF93;;chr15:53082521..53082549,-!p1@ONECUT1!0.88!6.51!ONECUT1;;chr13:100634130..100634143,+!p3@ZIC2!0.88!6.51!ZIC2;;chr7:26191809..26191890,+!p1@NFE2L3!0.87!33.46!NFE2L3;;chr6:31869828..31869880,-!p1@ZBTB12!0.87!12.55!ZBTB12;;chr18:56530136..56530199,+!p3@ZNF532!0.87!9.88!ZNF532;;chr16:51185573..51185593,-!p3@SALL1!0.87!6.39!SALL1;;chr19:23941680..23941704,-!p1@ZNF681!0.86!19.17!ZNF681;;chr2:121493425..121493474,+!p1@GLI2!0.86!14.41!GLI2;;chr19:20150268..20150298,-!p2@ZNF682!0.86!12.08!ZNF682;;chr8:70983462..70983471,-!p4@PRDM14!0.86!6.27!PRDM14;;chr14:22005343..22005364,-!p5@SALL2!0.86!6.27!SALL2;;chr17:41623692..41623715,-!p1@ETV4!0.85!27.42!ETV4;;chr11:31825588..31825613,-!p8@PAX6!0.85!6.16!PAX6;;chr12:66218420..66218439,+!p12@HMGA2!0.85!6.16!HMGA2;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!0.85!6.04!MEF2B;;chr6:21593973..21593988,+!p1@SOX4!0.84!225.30!SOX4;;chr6:19837592..19837621,+!p1@ID4!0.84!38.23!ID4;;chr14:21566540..21566580,-!p2@ZNF219!0.84!8.25!ZNF219;;chr6:50786591..50786614,+!p1@TFAP2B!0.84!5.93!TFAP2B;;chr19:20278012..20278034,+!p1@ZNF486!0.83!51.82!ZNF486;;chr14:55493763..55493824,-!p1@WDHD1!0.83!46.71!WDHD1;;chr12:3068544..3068597,+!p1@TEAD4!0.83!37.30!TEAD4;;chr19:47538560..47538591,+!p2@NPAS1!0.83!5.81!NPAS1;;chr12:7941942..7941949,+!p3@NANOG!0.83!5.69!NANOG;;chr2:60780753..60780800,-!p1@BCL11A!0.82!29.51!BCL11A;;chr2:166326200..166326216,+!p1@CSRNP3!0.82!8.48!CSRNP3;;chr7:35293685..35293718,-!p1@TBX20!0.82!5.58!TBX20;;chr12:50479109..50479146,+!p2@SMARCD1!0.81!101.44!SMARCD1;;chr19:22034809..22034878,-!p2@ZNF43!0.81!20.45!ZNF43;;chr17:41623009..41623053,-!p4@ETV4!0.81!9.06!ETV4;;chr8:128428066..128428078,+!p1@POU5F1B!0.81!5.46!POU5F1B;;chr1:93544791..93544807,+!p2@MTF2!0.80!8.48!MTF2;;chr1:247171316..247171336,-!p3@ZNF695!0.80!8.25!ZNF695;;chr5:174151612..174151633,+!p2@MSX2!0.80!5.34!MSX2;;chr16:51185318..51185348,-!p2@SALL1!0.80!5.34!SALL1;;chr3:52002412..52002433,-!p7@PCBP4!0.80!5.34!PCBP4;;chr19:20959098..20959117,+!p1@ZNF66P!0.79!23.24!ZNF66P;;chr5:124084493..124084524,-!p2@ZNF608!0.79!12.08!ZNF608;;chr19:54024251..54024305,+!p4@ZNF331!0.79!8.71!ZNF331;;chr9:127533582..127533615,-!p1@NR6A1!0.79!8.02!NR6A1;;chr19:49864746..49864780,-!p2@TEAD2!0.79!7.32!TEAD2;;chr6:15245797..15245818,+!p8@JARID2!0.79!6.39!JARID2;;chr8:86089627..86089653,+!p3@E2F5!0.79!5.93!E2F5;;chr8:102504651..102504683,+!p1@GRHL2!0.79!5.23!GRHL2;;chr8:11561684..11561751,+!p1@GATA4!0.79!5.23!GATA4;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.79!5.23!SEBOX;;chr14:60975883..60975911,+!p1@SIX6!0.79!5.11!SIX6;;chr14:21994449..21994524,-!p2@SALL2!0.78!16.03!SALL2;;chr19:925727..925784,+!p3@ARID3A!0.78!11.27!ARID3A;;chr6:134210243..134210257,+!p1@TCF21!0.78!5.00!TCF21;;chr2:16080635..16080650,+!p4@MYCN!0.78!5.00!MYCN;;chr2:88752231..88752245,-!p2@FOXI3!0.78!5.00!FOXI3;;chr19:58220517..58220583,-!p1@ZNF154!0.77!16.73!ZNF154;;chrX:84499081..84499115,+!p2@ZNF711!0.77!7.44!ZNF711;;chr20:30193083..30193098,+!p1@ID1!0.76!425.73!ID1;;chr12:7079780..7079791,-!p2@PHB2!0.76!26.96!PHB2;;chr17:46608354..46608385,-!p1@HOXB1!0.76!4.76!HOXB1;;chr7:64363638..64363667,+!p1@ZNF273!0.75!25.45!ZNF273;;chr16:29818160..29818188,+!p6@MAZ!0.75!23.94!MAZ;;chr6:15246217..15246228,+!p3@JARID2!0.75!8.71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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002322 | |||
|ffid_belonging_in_development=CL:0000133,CL:0000221 | |ffid_belonging_in_development=CL:0000133,CL:0000221 | ||
|fonse_cell_line=FF:0100669 | |fonse_cell_line=FF:0100669 | ||
Line 42: | Line 43: | ||
|fonse_treatment_closure=EFO:0000369,FF:0000334,FF:0000532,FF:12627-134E8 | |fonse_treatment_closure=EFO:0000369,FF:0000334,FF:0000532,FF:12627-134E8 | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/H9%2520Embryoid%2520body%2520cells%252c%2520melanocytic%2520induction%252c%2520day00%252c%2520biol_rep1%2520%2528H9EB-1%2520d0%2529.CNhs12822.12627-134E8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/H9%2520Embryoid%2520body%2520cells%252c%2520melanocytic%2520induction%252c%2520day00%252c%2520biol_rep1%2520%2528H9EB-1%2520d0%2529.CNhs12822.12627-134E8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/H9%2520Embryoid%2520body%2520cells%252c%2520melanocytic%2520induction%252c%2520day00%252c%2520biol_rep1%2520%2528H9EB-1%2520d0%2529.CNhs12822.12627-134E8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/H9%2520Embryoid%2520body%2520cells%252c%2520melanocytic%2520induction%252c%2520day00%252c%2520biol_rep1%2520%2528H9EB-1%2520d0%2529.CNhs12822.12627-134E8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/H9%2520Embryoid%2520body%2520cells%252c%2520melanocytic%2520induction%252c%2520day00%252c%2520biol_rep1%2520%2528H9EB-1%2520d0%2529.CNhs12822.12627-134E8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:12627-134E8 | |id=FF:12627-134E8 | ||
|is_a=EFO:0002091;;FF:0000532 | |is_a=EFO:0002091;;FF:0000532 | ||
Line 47: | Line 53: | ||
|library_id=CNhs12822 | |library_id=CNhs12822 | ||
|library_id_phase_based=2:CNhs12822 | |library_id_phase_based=2:CNhs12822 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12627 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12627 | |||
|name=H9 Embryoid body cells, melanocytic induction | |name=H9 Embryoid body cells, melanocytic induction | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 54: | Line 64: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| ||
Line 93: | Line 104: | ||
|top_motifs=OCT4_SOX2{dimer}:2.71159397879;PATZ1:2.39988933635;T:2.12066871191;SP1:2.06724247944;GFI1:1.68874997617;SNAI1..3:1.56131167173;NFY{A,B,C}:1.55644360843;PBX1:1.48593665526;RBPJ:1.43943019902;SOX{8,9,10}:1.42775405161;E2F1..5:1.41676695197;XCPE1{core}:1.40767022087;NANOG:1.35976761428;PAX1,9:1.3477811251;TBP:1.31357940391;MAZ:1.30291355005;MZF1:1.28963388314;POU5F1:1.2583472212;FOXM1:1.20962065772;POU2F1..3:1.18504802;ZIC1..3:1.15145367475;RREB1:1.15053725763;EBF1:1.13698914806;MYOD1:1.13322839371;ZEB1:1.10831413762;VSX1,2:1.08500676794;SOX2:1.04856361771;ZNF143:1.04284247439;ZNF384:1.04046968846;RORA:0.999479807872;ONECUT1,2:0.992938577222;TFDP1:0.983098778356;HIF1A:0.928116226376;STAT1,3:0.927609434047;LEF1_TCF7_TCF7L1,2:0.90672615341;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.865527305102;NKX2-3_NKX2-5:0.845587603302;NRF1:0.80990523319;CUX2:0.804035698364;LMO2:0.800746079682;SOX17:0.792512088392;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.766193779888;EVI1:0.743786316711;HNF4A_NR2F1,2:0.728527281915;bHLH_family:0.72648939743;TOPORS:0.712090268301;YY1:0.659845819046;KLF4:0.645573621876;HOX{A4,D4}:0.607094271609;ATF4:0.599033227078;HOX{A6,A7,B6,B7}:0.59428853378;HNF1A:0.588198452907;IKZF2:0.58705911603;CRX:0.543870066214;ZBTB6:0.509798340565;AIRE:0.504968355821;CDC5L:0.492158962808;FOXD3:0.462479351448;GTF2I:0.433339007096;HAND1,2:0.42608743753;DBP:0.389762138852;BREu{core}:0.383025776357;PAX5:0.37804713258;UFEwm:0.377048286471;HOX{A5,B5}:0.370325669369;MTF1:0.36761549697;STAT5{A,B}:0.364216784206;ESRRA:0.350924993502;EN1,2:0.332055982934;ELK1,4_GABP{A,B1}:0.330848470314;HIC1:0.277059373602;MYB:0.272003601345;GATA6:0.230095503906;ZFP161:0.213415968161;REST:0.202629186776;TBX4,5:0.181921390281;RXR{A,B,G}:0.168052299803;TP53:0.164134107784;PRRX1,2:0.153704421781;TFAP2B:0.153549449701;ADNP_IRX_SIX_ZHX:0.14384042399;EGR1..3:0.140780943439;SREBF1,2:0.125661806828;POU3F1..4:0.1160541346;PRDM1:0.0843910086327;ESR1:0.0796133302883;NHLH1,2:0.0546038451503;GCM1,2:0.0499230202548;HMX1:0.0296527937639;GTF2A1,2:0.0188282177088;ALX1:-0.00120398185807;LHX3,4:-0.00637135312959;HSF1,2:-0.0159970374947;MTE{core}:-0.0192397457558;ZNF148:-0.0256951808751;NR1H4:-0.0270009673295;FOX{I1,J2}:-0.0281358022303;FOXN1:-0.0299763739653;NKX2-1,4:-0.0734134139379;RFX1:-0.0808076494413;IKZF1:-0.0831218683397;MYFfamily:-0.0865719334428;PAX2:-0.0995604744603;PPARG:-0.104334312122;ZNF423:-0.127304875408;JUN:-0.139042595329;MED-1{core}:-0.174410301907;FOXA2:-0.19100423918;ARID5B:-0.198904782778;POU6F1:-0.201425872472;GATA4:-0.203450618026;FOX{F1,F2,J1}:-0.219271824711;TEAD1:-0.234414549697;MYBL2:-0.245030978653;NANOG{mouse}:-0.250364619523;RXRA_VDR{dimer}:-0.252786519725;GFI1B:-0.254307821601;CDX1,2,4:-0.264789327986;PAX8:-0.294103923428;PITX1..3:-0.315432530281;XBP1:-0.315449561348;ATF2:-0.332204518009;ALX4:-0.334940323368;NKX3-2:-0.337384045252;NR5A1,2:-0.341528889897;SRF:-0.355069010515;CREB1:-0.355458707522;FOXL1:-0.356666764897;NFE2L2:-0.357022866792;NFKB1_REL_RELA:-0.382962001616;NKX6-1,2:-0.394315158284;TFCP2:-0.415560621524;SOX5:-0.421823170895;ATF5_CREB3:-0.454639913221;FOXP1:-0.464979824549;AHR_ARNT_ARNT2:-0.473303081289;TFAP4:-0.478651768251;MEF2{A,B,C,D}:-0.501128886997;TFAP2{A,C}:-0.519469537303;FOX{D1,D2}:-0.526514738927;NFE2:-0.53440677663;HES1:-0.539060620787;TEF:-0.544070269017;FOSL2:-0.557315213861;PAX3,7:-0.580454731392;SPI1:-0.587145814606;BACH2:-0.592739733808;FOXQ1:-0.593569850027;ZBTB16:-0.609368292624;FOS_FOS{B,L1}_JUN{B,D}:-0.609384729959;HMGA1,2:-0.614505090286;BPTF:-0.665761241545;NKX2-2,8:-0.666537057686;NFE2L1:-0.699321689113;AR:-0.700791534639;HLF:-0.729049515838;RUNX1..3:-0.732500982194;NFIX:-0.770685878451;FOXP3:-0.777763625822;SPIB:-0.785744457202;NR3C1:-0.791212274434;RFX2..5_RFXANK_RFXAP:-0.855820512281;NKX3-1:-0.868355364908;ATF6:-0.885560226141;DMAP1_NCOR{1,2}_SMARC:-0.900162037289;FOXO1,3,4:-0.91166968923;ELF1,2,4:-0.913163611234;NR6A1:-0.921250234341;ETS1,2:-0.96311963387;CEBPA,B_DDIT3:-0.964984781761;POU1F1:-0.981131768474;SPZ1:-1.01182505975;ZNF238:-1.03166923847;TLX2:-1.0353850762;IRF7:-1.07213939983;TLX1..3_NFIC{dimer}:-1.09684241987;PAX4:-1.12464132023;NFIL3:-1.14397994119;GLI1..3:-1.1509694216;SMAD1..7,9:-1.16460526812;TAL1_TCF{3,4,12}:-1.1764865461;TGIF1:-1.19831612678;HBP1_HMGB_SSRP1_UBTF:-1.22065876439;NFATC1..3:-1.2355185795;IRF1,2:-1.26354983107;GZF1:-1.27786539515;EP300:-1.30736385674;MAFB:-1.33862241366;HOXA9_MEIS1:-1.3416254123;PAX6:-1.37805571035;STAT2,4,6:-1.49697227591;PDX1:-1.6188711568 | |top_motifs=OCT4_SOX2{dimer}:2.71159397879;PATZ1:2.39988933635;T:2.12066871191;SP1:2.06724247944;GFI1:1.68874997617;SNAI1..3:1.56131167173;NFY{A,B,C}:1.55644360843;PBX1:1.48593665526;RBPJ:1.43943019902;SOX{8,9,10}:1.42775405161;E2F1..5:1.41676695197;XCPE1{core}:1.40767022087;NANOG:1.35976761428;PAX1,9:1.3477811251;TBP:1.31357940391;MAZ:1.30291355005;MZF1:1.28963388314;POU5F1:1.2583472212;FOXM1:1.20962065772;POU2F1..3:1.18504802;ZIC1..3:1.15145367475;RREB1:1.15053725763;EBF1:1.13698914806;MYOD1:1.13322839371;ZEB1:1.10831413762;VSX1,2:1.08500676794;SOX2:1.04856361771;ZNF143:1.04284247439;ZNF384:1.04046968846;RORA:0.999479807872;ONECUT1,2:0.992938577222;TFDP1:0.983098778356;HIF1A:0.928116226376;STAT1,3:0.927609434047;LEF1_TCF7_TCF7L1,2:0.90672615341;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.865527305102;NKX2-3_NKX2-5:0.845587603302;NRF1:0.80990523319;CUX2:0.804035698364;LMO2:0.800746079682;SOX17:0.792512088392;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.766193779888;EVI1:0.743786316711;HNF4A_NR2F1,2:0.728527281915;bHLH_family:0.72648939743;TOPORS:0.712090268301;YY1:0.659845819046;KLF4:0.645573621876;HOX{A4,D4}:0.607094271609;ATF4:0.599033227078;HOX{A6,A7,B6,B7}:0.59428853378;HNF1A:0.588198452907;IKZF2:0.58705911603;CRX:0.543870066214;ZBTB6:0.509798340565;AIRE:0.504968355821;CDC5L:0.492158962808;FOXD3:0.462479351448;GTF2I:0.433339007096;HAND1,2:0.42608743753;DBP:0.389762138852;BREu{core}:0.383025776357;PAX5:0.37804713258;UFEwm:0.377048286471;HOX{A5,B5}:0.370325669369;MTF1:0.36761549697;STAT5{A,B}:0.364216784206;ESRRA:0.350924993502;EN1,2:0.332055982934;ELK1,4_GABP{A,B1}:0.330848470314;HIC1:0.277059373602;MYB:0.272003601345;GATA6:0.230095503906;ZFP161:0.213415968161;REST:0.202629186776;TBX4,5:0.181921390281;RXR{A,B,G}:0.168052299803;TP53:0.164134107784;PRRX1,2:0.153704421781;TFAP2B:0.153549449701;ADNP_IRX_SIX_ZHX:0.14384042399;EGR1..3:0.140780943439;SREBF1,2:0.125661806828;POU3F1..4:0.1160541346;PRDM1:0.0843910086327;ESR1:0.0796133302883;NHLH1,2:0.0546038451503;GCM1,2:0.0499230202548;HMX1:0.0296527937639;GTF2A1,2:0.0188282177088;ALX1:-0.00120398185807;LHX3,4:-0.00637135312959;HSF1,2:-0.0159970374947;MTE{core}:-0.0192397457558;ZNF148:-0.0256951808751;NR1H4:-0.0270009673295;FOX{I1,J2}:-0.0281358022303;FOXN1:-0.0299763739653;NKX2-1,4:-0.0734134139379;RFX1:-0.0808076494413;IKZF1:-0.0831218683397;MYFfamily:-0.0865719334428;PAX2:-0.0995604744603;PPARG:-0.104334312122;ZNF423:-0.127304875408;JUN:-0.139042595329;MED-1{core}:-0.174410301907;FOXA2:-0.19100423918;ARID5B:-0.198904782778;POU6F1:-0.201425872472;GATA4:-0.203450618026;FOX{F1,F2,J1}:-0.219271824711;TEAD1:-0.234414549697;MYBL2:-0.245030978653;NANOG{mouse}:-0.250364619523;RXRA_VDR{dimer}:-0.252786519725;GFI1B:-0.254307821601;CDX1,2,4:-0.264789327986;PAX8:-0.294103923428;PITX1..3:-0.315432530281;XBP1:-0.315449561348;ATF2:-0.332204518009;ALX4:-0.334940323368;NKX3-2:-0.337384045252;NR5A1,2:-0.341528889897;SRF:-0.355069010515;CREB1:-0.355458707522;FOXL1:-0.356666764897;NFE2L2:-0.357022866792;NFKB1_REL_RELA:-0.382962001616;NKX6-1,2:-0.394315158284;TFCP2:-0.415560621524;SOX5:-0.421823170895;ATF5_CREB3:-0.454639913221;FOXP1:-0.464979824549;AHR_ARNT_ARNT2:-0.473303081289;TFAP4:-0.478651768251;MEF2{A,B,C,D}:-0.501128886997;TFAP2{A,C}:-0.519469537303;FOX{D1,D2}:-0.526514738927;NFE2:-0.53440677663;HES1:-0.539060620787;TEF:-0.544070269017;FOSL2:-0.557315213861;PAX3,7:-0.580454731392;SPI1:-0.587145814606;BACH2:-0.592739733808;FOXQ1:-0.593569850027;ZBTB16:-0.609368292624;FOS_FOS{B,L1}_JUN{B,D}:-0.609384729959;HMGA1,2:-0.614505090286;BPTF:-0.665761241545;NKX2-2,8:-0.666537057686;NFE2L1:-0.699321689113;AR:-0.700791534639;HLF:-0.729049515838;RUNX1..3:-0.732500982194;NFIX:-0.770685878451;FOXP3:-0.777763625822;SPIB:-0.785744457202;NR3C1:-0.791212274434;RFX2..5_RFXANK_RFXAP:-0.855820512281;NKX3-1:-0.868355364908;ATF6:-0.885560226141;DMAP1_NCOR{1,2}_SMARC:-0.900162037289;FOXO1,3,4:-0.91166968923;ELF1,2,4:-0.913163611234;NR6A1:-0.921250234341;ETS1,2:-0.96311963387;CEBPA,B_DDIT3:-0.964984781761;POU1F1:-0.981131768474;SPZ1:-1.01182505975;ZNF238:-1.03166923847;TLX2:-1.0353850762;IRF7:-1.07213939983;TLX1..3_NFIC{dimer}:-1.09684241987;PAX4:-1.12464132023;NFIL3:-1.14397994119;GLI1..3:-1.1509694216;SMAD1..7,9:-1.16460526812;TAL1_TCF{3,4,12}:-1.1764865461;TGIF1:-1.19831612678;HBP1_HMGB_SSRP1_UBTF:-1.22065876439;NFATC1..3:-1.2355185795;IRF1,2:-1.26354983107;GZF1:-1.27786539515;EP300:-1.30736385674;MAFB:-1.33862241366;HOXA9_MEIS1:-1.3416254123;PAX6:-1.37805571035;STAT2,4,6:-1.49697227591;PDX1:-1.6188711568 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12627-134E8;search_select_hide=table117:FF:12627-134E8 | |||
}} | }} |
Latest revision as of 18:41, 4 June 2020
Name: | H9 Embryoid body cells, melanocytic induction |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs12822 |
Sample type: | time courses |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12822
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12822
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0626 |
10 | 10 | 0.0107 |
100 | 100 | 0.905 |
101 | 101 | 0.271 |
102 | 102 | 0.834 |
103 | 103 | 0.192 |
104 | 104 | 0.718 |
105 | 105 | 0.167 |
106 | 106 | 0.033 |
107 | 107 | 0.362 |
108 | 108 | 0.667 |
109 | 109 | 0.216 |
11 | 11 | 0.096 |
110 | 110 | 0.265 |
111 | 111 | 0.0103 |
112 | 112 | 0.328 |
113 | 113 | 0.502 |
114 | 114 | 0.00844 |
115 | 115 | 0.258 |
116 | 116 | 0.858 |
117 | 117 | 0.101 |
118 | 118 | 0.701 |
119 | 119 | 0.171 |
12 | 12 | 0.972 |
120 | 120 | 0.409 |
121 | 121 | 0.966 |
122 | 122 | 0.885 |
123 | 123 | 0.0108 |
124 | 124 | 0.15 |
125 | 125 | 0.563 |
126 | 126 | 0.68 |
127 | 127 | 0.555 |
128 | 128 | 0.494 |
129 | 129 | 0.464 |
13 | 13 | 0.595 |
130 | 130 | 0.147 |
131 | 131 | 0.748 |
132 | 132 | 0.952 |
133 | 133 | 0.143 |
134 | 134 | 0.501 |
135 | 135 | 0.0508 |
136 | 136 | 0.206 |
137 | 137 | 0.248 |
138 | 138 | 0.21 |
139 | 139 | 0.0103 |
14 | 14 | 0.573 |
140 | 140 | 0.0251 |
141 | 141 | 0.692 |
142 | 142 | 0.965 |
143 | 143 | 0.00507 |
144 | 144 | 0.746 |
145 | 145 | 0.314 |
146 | 146 | 0.42 |
147 | 147 | 0.775 |
148 | 148 | 0.00294 |
149 | 149 | 0.0547 |
15 | 15 | 0.0459 |
150 | 150 | 0.498 |
151 | 151 | 0.0629 |
152 | 152 | 0.612 |
153 | 153 | 0.382 |
154 | 154 | 0.126 |
155 | 155 | 0.992 |
156 | 156 | 0.595 |
157 | 157 | 0.534 |
158 | 158 | 0.444 |
159 | 159 | 0.822 |
16 | 16 | 0.388 |
160 | 160 | 0.424 |
161 | 161 | 0.556 |
162 | 162 | 0.425 |
163 | 163 | 0.418 |
164 | 164 | 0.171 |
165 | 165 | 0.166 |
166 | 166 | 0.773 |
167 | 167 | 0.0116 |
168 | 168 | 0.364 |
169 | 169 | 0.00167 |
17 | 17 | 0.28 |
18 | 18 | 0.249 |
19 | 19 | 0.237 |
2 | 2 | 0.73 |
20 | 20 | 0.875 |
21 | 21 | 0.507 |
22 | 22 | 0.275 |
23 | 23 | 0.0518 |
24 | 24 | 0.716 |
25 | 25 | 0.376 |
26 | 26 | 0.119 |
27 | 27 | 0.622 |
28 | 28 | 0.671 |
29 | 29 | 0.662 |
3 | 3 | 0.0562 |
30 | 30 | 0.584 |
31 | 31 | 0.973 |
32 | 32 | 0.131 |
33 | 33 | 0.709 |
34 | 34 | 0.912 |
35 | 35 | 0.297 |
36 | 36 | 0.0423 |
37 | 37 | 0.218 |
38 | 38 | 0.321 |
39 | 39 | 0.578 |
4 | 4 | 0.837 |
40 | 40 | 0.739 |
41 | 41 | 0.127 |
42 | 42 | 0.208 |
43 | 43 | 0.113 |
44 | 44 | 0.838 |
45 | 45 | 0.798 |
46 | 46 | 0.0511 |
47 | 47 | 0.479 |
48 | 48 | 0.426 |
49 | 49 | 0.072 |
5 | 5 | 0.0872 |
50 | 50 | 0.908 |
51 | 51 | 0.748 |
52 | 52 | 0.553 |
53 | 53 | 0.168 |
54 | 54 | 0.473 |
55 | 55 | 0.0121 |
56 | 56 | 0.602 |
57 | 57 | 0.273 |
58 | 58 | 0.0932 |
59 | 59 | 0.466 |
6 | 6 | 0.646 |
60 | 60 | 0.125 |
61 | 61 | 0.823 |
62 | 62 | 0.0314 |
63 | 63 | 0.1 |
64 | 64 | 0.256 |
65 | 65 | 0.138 |
66 | 66 | 0.623 |
67 | 67 | 0.224 |
68 | 68 | 0.413 |
69 | 69 | 0.703 |
7 | 7 | 0.376 |
70 | 70 | 0.00717 |
71 | 71 | 0.0329 |
72 | 72 | 0.493 |
73 | 73 | 0.124 |
74 | 74 | 0.154 |
75 | 75 | 0.207 |
76 | 76 | 0.322 |
77 | 77 | 0.352 |
78 | 78 | 0.506 |
79 | 79 | 0.343 |
8 | 8 | 0.0984 |
80 | 80 | 0.363 |
81 | 81 | 0.245 |
82 | 82 | 0.0695 |
83 | 83 | 0.352 |
84 | 84 | 0.851 |
85 | 85 | 0.0688 |
86 | 86 | 0.304 |
87 | 87 | 0.545 |
88 | 88 | 0.933 |
89 | 89 | 0.159 |
9 | 9 | 0.296 |
90 | 90 | 0.103 |
91 | 91 | 0.165 |
92 | 92 | 0.0432 |
93 | 93 | 0.267 |
94 | 94 | 0.0517 |
95 | 95 | 0.785 |
96 | 96 | 0.0172 |
97 | 97 | 0.641 |
98 | 98 | 0.207 |
99 | 99 | 0.481 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12822
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000532 human H9 Embryoid body cells 0 days after melanocytic induction sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002321 (embryonic cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000147 (pigment cell)
0000710 (neurecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000034 (stem cell)
0000148 (melanocyte)
0002322 (embryonic stem cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101581 (embryonic stem cell line sample)
0000350 (experimentally modified sample)
0000334 (melanocytic induction sample)
0000380 (0 days sample)
0000400 (H9 embryonic stem cell line sample)
0100669 (embryonic cell line sample)
0000532 (human H9 Embryoid body cells 0 days after melanocytic induction sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)