FFCP PHASE1:Mm9::chr3:138738142..138738217,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:138738142..138738217,-
|short_description=p1@Rap1gds1
|description=CAGE_peak_1_at_Rap1gds1_5end
|association_with_transcript=0bp_to_ENSMUST00000029796,ENSM...") |
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(8 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=229877 | |EntrezGene=229877 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=E9Q6Q4,E9Q912,Q3TPS9,Q3TA69,Q3TU36,Q8BKH0,Q3TYN8 | |UniProt=E9Q6Q4,E9Q912,Q3TPS9,Q3TA69,Q3TU36,Q8BKH0,Q3TYN8 | ||
|association_with_transcript=0bp_to_ENSMUST00000029796,ENSMUST00000098574,NM_001040690,NM_145544,uc008rnr.1,uc008rns.1,uc008rnt.1,uc008rnu.1,uc008rnv.1,uc008rnw.1,uc008rnx.1_5end | |||
|cluster_id=chr3:138738142..138738217,- | |||
|description=CAGE_peak_1_at_Rap1gds1_5end | |||
|id=chr3:138738142..138738217,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!2.23e-12!102;UBERON:0000924!2.23e-12!102;UBERON:0006601!2.23e-12!102;UBERON:0000073!2.40e-12!75;UBERON:0001016!2.40e-12!75;UBERON:0002020!4.21e-12!34;UBERON:0001017!7.22e-12!73;UBERON:0005743!7.22e-12!73;UBERON:0001049!2.16e-11!52;UBERON:0005068!2.16e-11!52;UBERON:0006241!2.16e-11!52;UBERON:0007135!2.16e-11!52;UBERON:0002346!4.60e-11!71;UBERON:0003075!4.60e-11!71;UBERON:0007284!4.60e-11!71;UBERON:0000955!1.30e-10!50;UBERON:0006238!1.30e-10!50;UBERON:0002616!3.90e-10!49;UBERON:0002791!1.61e-09!29;UBERON:0003528!1.61e-09!29;UBERON:0001893!1.61e-09!29;UBERON:0000033!3.98e-09!63;UBERON:0007811!1.01e-08!86;UBERON:0000153!3.10e-08!94;UBERON:0000025!5.09e-08!114;UBERON:0000477!1.18e-07!154;UBERON:0002021!2.24e-07!10;UBERON:0000411!2.24e-07!10;UBERON:0001950!2.24e-07!10;UBERON:0000956!2.34e-07!21;UBERON:0001869!2.34e-07!21;UBERON:0000203!2.34e-07!21;UBERON:0003080!2.35e-07!40;UBERON:0004111!2.39e-07!122;UBERON:0002780!7.62e-07!39;UBERON:0001890!7.62e-07!39;UBERON:0006240!7.62e-07!39 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,2.71e-13,92;UBERON:0000073,1.44e-12,54;UBERON:0001016,2.40e-12,75;UBERON:0002020,4.21e-12,34;UBERON:0001017,7.22e-12,73;UBERON:0004121,1.38e-11,95;UBERON:0000924,1.38e-11,95;UBERON:0006601,1.38e-11,95;UBERON:0001049,2.16e-11,52;UBERON:0005068,2.16e-11,52;UBERON:0006241,2.16e-11,52;UBERON:0007135,2.16e-11,52;UBERON:0002346,1.98e-10,64;UBERON:0003075,1.98e-10,64;UBERON:0007284,1.98e-10,64;UBERON:0010371,2.56e-10,73;UBERON:0003528,1.61e-09,29;UBERON:0002791,1.61e-09,29;UBERON:0001893,1.61e-09,29;UBERON:0000955,5.96e-09,47;UBERON:0006238,5.96e-09,47;UBERON:0002616,1.69e-08,46;UBERON:0000025,5.09e-08,114;UBERON:0002021,2.24e-07,10;UBERON:0000411,2.24e-07,10;UBERON:0001950,2.24e-07,10;UBERON:0000956,2.34e-07,21;UBERON:0001869,2.34e-07,21;UBERON:0000203,2.34e-07,21;UBERON:0003080,2.35e-07,40;UBERON:0004111,2.39e-07,122;UBERON:0002780,7.62e-07,39;UBERON:0001890,7.62e-07,39;UBERON:0006240,7.62e-07,39 | |||
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| ||
|short_description=p1@Rap1gds1 | |||
}} | }} |
Latest revision as of 17:03, 1 October 2015
Short description: | p1@Rap1gds1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rap1gds1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000029796, ENSMUST00000098574, NM_001040690, NM_145544, uc008rnr.1, uc008rns.1, uc008rnt.1, uc008rnu.1, uc008rnv.1, uc008rnw.1, uc008rnx.1_5end |
EntrezGene: | Rap1gds1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 2.71e-13 | 92 |
regional part of nervous system | 1.44e-12 | 54 |
nervous system | 2.40e-12 | 75 |
gray matter | 4.21e-12 | 34 |
central nervous system | 7.22e-12 | 73 |
ectoderm-derived structure | 1.38e-11 | 95 |
ectoderm | 1.38e-11 | 95 |
presumptive ectoderm | 1.38e-11 | 95 |
neural tube | 2.16e-11 | 52 |
neural rod | 2.16e-11 | 52 |
future spinal cord | 2.16e-11 | 52 |
neural keel | 2.16e-11 | 52 |
neurectoderm | 1.98e-10 | 64 |
neural plate | 1.98e-10 | 64 |
presumptive neural plate | 1.98e-10 | 64 |
ecto-epithelium | 2.56e-10 | 73 |
brain grey matter | 1.61e-09 | 29 |
regional part of telencephalon | 1.61e-09 | 29 |
telencephalon | 1.61e-09 | 29 |
brain | 5.96e-09 | 47 |
future brain | 5.96e-09 | 47 |
regional part of brain | 1.69e-08 | 46 |
tube | 5.09e-08 | 114 |
occipital lobe | 2.24e-07 | 10 |
visual cortex | 2.24e-07 | 10 |
neocortex | 2.24e-07 | 10 |
cerebral cortex | 2.34e-07 | 21 |
cerebral hemisphere | 2.34e-07 | 21 |
pallium | 2.34e-07 | 21 |
anterior neural tube | 2.35e-07 | 40 |
anatomical conduit | 2.39e-07 | 122 |
regional part of forebrain | 7.62e-07 | 39 |
forebrain | 7.62e-07 | 39 |
future forebrain | 7.62e-07 | 39 |