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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004962
|DRA_sample_Accession=CAGE@SAMD00004962
|accession_numbers=CAGE;DRX008099;DRR008971;DRZ000396;DRZ001781
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004962
|accession_numbers=CAGE;DRX008099;DRR008971;DRZ000396;DRZ001781;DRZ011746;DRZ013131
|accession_numbers_RNASeq=sRNA-Seq;DRX037006;DRR041372;DRZ007014
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|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0003688,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0004457,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004923,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002323,UBERON:0000042,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0002417,UBERON:0002358,UBERON:0000916,UBERON:0003684,UBERON:0001178
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000325,CL:0000255,CL:0000136,CL:0002615
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000325,CL:0000255,CL:0000136,CL:0002615
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|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520omental%252c%2520donor3.CNhs12068.11475-119C8.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520omental%252c%2520donor3.CNhs12068.11475-119C8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520omental%252c%2520donor3.CNhs12068.11475-119C8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520omental%252c%2520donor3.CNhs12068.11475-119C8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520omental%252c%2520donor3.CNhs12068.11475-119C8.hg38.nobarcode.ctss.bed.gz
|id=FF:11475-119C8
|id=FF:11475-119C8
|is_a=EFO:0002091;;FF:0000039
|is_a=EFO:0002091;;FF:0000039
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|library_id=CNhs12068
|library_id=CNhs12068
|library_id_phase_based=2:CNhs12068
|library_id_phase_based=2:CNhs12068
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11475
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10002.GTGAAA.11475
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11475
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10002.GTGAAA.11475
|name=Adipocyte - omental, donor3
|name=Adipocyte - omental, donor3
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
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|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 68: Line 82:
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|sample_category=primary cells
Line 91: Line 106:
|top_motifs=RXRA_VDR{dimer}:2.45957886027;GZF1:2.26333883646;ESR1:2.16002827729;NKX2-2,8:2.1257120864;UFEwm:2.11543210444;EBF1:2.1107399591;PAX1,9:2.05993085514;HES1:2.01045080548;IKZF1:1.97942383037;SMAD1..7,9:1.9527721518;TFAP4:1.94962762397;XBP1:1.91675021886;SRF:1.86026581531;ATF6:1.82768378661;TAL1_TCF{3,4,12}:1.79459058473;MAFB:1.75203521901;HIF1A:1.7008239556;GLI1..3:1.63494106248;ZNF238:1.5426498173;AR:1.50802200831;NR3C1:1.50594670901;GCM1,2:1.48885186775;KLF4:1.44903558987;TEAD1:1.41413401143;FOXL1:1.41349841019;ARID5B:1.3257414434;RXR{A,B,G}:1.26921188743;HOX{A5,B5}:1.21543632264;ESRRA:1.2036598752;TFCP2:1.19192809779;TP53:1.13374251494;TFAP2{A,C}:1.07677493727;ZNF423:1.00440641808;NFE2L1:0.987375817938;LHX3,4:0.98706246346;bHLH_family:0.960649341091;NKX3-1:0.958165327059;SPZ1:0.953177920537;MYBL2:0.926518150844;HMGA1,2:0.91875881588;TLX1..3_NFIC{dimer}:0.910426673719;PAX6:0.904607981029;MAZ:0.880535594784;NR6A1:0.837670104422;MTF1:0.817979848718;HMX1:0.815365086981;PAX5:0.814918867603;MTE{core}:0.780574065169;NFATC1..3:0.780156417434;EVI1:0.753654612087;NHLH1,2:0.748025506182;TEF:0.74698958752;ZBTB6:0.729451503628;STAT2,4,6:0.715210655325;GTF2I:0.69696867148;FOXO1,3,4:0.689361489053;NR1H4:0.689115197877;ALX4:0.672529022601;NANOG{mouse}:0.645312987782;GFI1B:0.642482866988;ZNF148:0.639191416121;NKX2-1,4:0.59169307823;DBP:0.54007536302;PATZ1:0.519726912694;HOXA9_MEIS1:0.513329720525;HOX{A6,A7,B6,B7}:0.496960523642;ZIC1..3:0.466883495838;HNF4A_NR2F1,2:0.450821503164;GTF2A1,2:0.434310729165;HOX{A4,D4}:0.412725654793;EN1,2:0.390627842286;TBP:0.382965153897;PPARG:0.376191945338;TFAP2B:0.349585806756;TBX4,5:0.32056086171;HIC1:0.320477814188;GATA4:0.306460548517;HLF:0.275057466126;HSF1,2:0.270544978791;NFIX:0.255356447746;MZF1:0.236084337478;MYFfamily:0.233381404833;NKX3-2:0.224898663062;POU6F1:0.212937102494;RORA:0.174837298494;REST:0.165875487733;FOXP3:0.129084134162;STAT1,3:0.128384150797;MEF2{A,B,C,D}:0.127870321415;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0762781407292;FOXA2:0.0666878530563;SOX5:0.0564252009415;NFE2L2:0.050551612956;NR5A1,2:0.0491600364981;SREBF1,2:0.0391321434777;SOX17:0.0124399359015;TGIF1:0.0111097423525;HAND1,2:-0.0480689511161;CDC5L:-0.0753068024304;ZNF384:-0.0792523994415;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.094845581857;MED-1{core}:-0.163679695492;PRDM1:-0.17723530856;HNF1A:-0.178640765382;SP1:-0.182068006107;RREB1:-0.203327526431;EP300:-0.204601280951;NFIL3:-0.242292839621;FOXD3:-0.268916179101;ZNF143:-0.301496952215;MYB:-0.301689789541;FOX{D1,D2}:-0.335140270934;ATF4:-0.336988657741;YY1:-0.338300726885;AHR_ARNT_ARNT2:-0.349836327307;CEBPA,B_DDIT3:-0.36190049429;BACH2:-0.380941437255;ELK1,4_GABP{A,B1}:-0.428305268376;CRX:-0.445690516487;NFE2:-0.479078151412;IRF1,2:-0.480403180435;TLX2:-0.508601315758;NRF1:-0.521672146886;XCPE1{core}:-0.526220752358;PAX3,7:-0.537264395166;RFX1:-0.539104261126;FOXM1:-0.55333846827;JUN:-0.570733948509;PAX2:-0.575697668541;NFKB1_REL_RELA:-0.595123116877;SNAI1..3:-0.617455560659;PRRX1,2:-0.625271781021;GFI1:-0.625636980152;GATA6:-0.640080208963;POU3F1..4:-0.644665605037;BREu{core}:-0.657324727552;FOS_FOS{B,L1}_JUN{B,D}:-0.664265227414;AIRE:-0.670336628334;ONECUT1,2:-0.671005393246;ATF2:-0.675682248935;ATF5_CREB3:-0.695211666605;FOSL2:-0.697724026362;RFX2..5_RFXANK_RFXAP:-0.703018829967;CREB1:-0.707680751474;SOX2:-0.712498669159;SPI1:-0.735102472303;ETS1,2:-0.739196694024;RUNX1..3:-0.747747491672;ZFP161:-0.755918351485;ELF1,2,4:-0.767988264969;SPIB:-0.776981709004;LMO2:-0.810584475136;RBPJ:-0.815763033448;NKX6-1,2:-0.826086980312;FOXP1:-0.843447204567;EGR1..3:-0.843984442261;DMAP1_NCOR{1,2}_SMARC:-0.865299829061;FOX{I1,J2}:-0.866580913165;IKZF2:-0.875062396849;STAT5{A,B}:-0.934825477359;IRF7:-0.936023065403;PDX1:-0.995855849473;PAX4:-1.00068936604;ZBTB16:-1.00730959158;NFY{A,B,C}:-1.04524943668;ZEB1:-1.05349278142;FOX{F1,F2,J1}:-1.08516344654;POU5F1:-1.10076459286;MYOD1:-1.14541153829;ADNP_IRX_SIX_ZHX:-1.1476910602;PBX1:-1.1867169811;PITX1..3:-1.22825235656;OCT4_SOX2{dimer}:-1.25342831127;TFDP1:-1.28021287511;CDX1,2,4:-1.29275472234;TOPORS:-1.30410531136;FOXN1:-1.31571105304;BPTF:-1.35230846179;T:-1.35485792853;LEF1_TCF7_TCF7L1,2:-1.45854681001;ALX1:-1.47339987609;PAX8:-1.4858445857;SOX{8,9,10}:-1.49315259959;HBP1_HMGB_SSRP1_UBTF:-1.5010250135;CUX2:-1.51589381886;E2F1..5:-1.5383539469;POU1F1:-1.60440203278;VSX1,2:-1.60801763566;NKX2-3_NKX2-5:-1.63902267617;NANOG:-1.67923918772;FOXQ1:-1.6962434076;POU2F1..3:-2.26159261065
|top_motifs=RXRA_VDR{dimer}:2.45957886027;GZF1:2.26333883646;ESR1:2.16002827729;NKX2-2,8:2.1257120864;UFEwm:2.11543210444;EBF1:2.1107399591;PAX1,9:2.05993085514;HES1:2.01045080548;IKZF1:1.97942383037;SMAD1..7,9:1.9527721518;TFAP4:1.94962762397;XBP1:1.91675021886;SRF:1.86026581531;ATF6:1.82768378661;TAL1_TCF{3,4,12}:1.79459058473;MAFB:1.75203521901;HIF1A:1.7008239556;GLI1..3:1.63494106248;ZNF238:1.5426498173;AR:1.50802200831;NR3C1:1.50594670901;GCM1,2:1.48885186775;KLF4:1.44903558987;TEAD1:1.41413401143;FOXL1:1.41349841019;ARID5B:1.3257414434;RXR{A,B,G}:1.26921188743;HOX{A5,B5}:1.21543632264;ESRRA:1.2036598752;TFCP2:1.19192809779;TP53:1.13374251494;TFAP2{A,C}:1.07677493727;ZNF423:1.00440641808;NFE2L1:0.987375817938;LHX3,4:0.98706246346;bHLH_family:0.960649341091;NKX3-1:0.958165327059;SPZ1:0.953177920537;MYBL2:0.926518150844;HMGA1,2:0.91875881588;TLX1..3_NFIC{dimer}:0.910426673719;PAX6:0.904607981029;MAZ:0.880535594784;NR6A1:0.837670104422;MTF1:0.817979848718;HMX1:0.815365086981;PAX5:0.814918867603;MTE{core}:0.780574065169;NFATC1..3:0.780156417434;EVI1:0.753654612087;NHLH1,2:0.748025506182;TEF:0.74698958752;ZBTB6:0.729451503628;STAT2,4,6:0.715210655325;GTF2I:0.69696867148;FOXO1,3,4:0.689361489053;NR1H4:0.689115197877;ALX4:0.672529022601;NANOG{mouse}:0.645312987782;GFI1B:0.642482866988;ZNF148:0.639191416121;NKX2-1,4:0.59169307823;DBP:0.54007536302;PATZ1:0.519726912694;HOXA9_MEIS1:0.513329720525;HOX{A6,A7,B6,B7}:0.496960523642;ZIC1..3:0.466883495838;HNF4A_NR2F1,2:0.450821503164;GTF2A1,2:0.434310729165;HOX{A4,D4}:0.412725654793;EN1,2:0.390627842286;TBP:0.382965153897;PPARG:0.376191945338;TFAP2B:0.349585806756;TBX4,5:0.32056086171;HIC1:0.320477814188;GATA4:0.306460548517;HLF:0.275057466126;HSF1,2:0.270544978791;NFIX:0.255356447746;MZF1:0.236084337478;MYFfamily:0.233381404833;NKX3-2:0.224898663062;POU6F1:0.212937102494;RORA:0.174837298494;REST:0.165875487733;FOXP3:0.129084134162;STAT1,3:0.128384150797;MEF2{A,B,C,D}:0.127870321415;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0762781407292;FOXA2:0.0666878530563;SOX5:0.0564252009415;NFE2L2:0.050551612956;NR5A1,2:0.0491600364981;SREBF1,2:0.0391321434777;SOX17:0.0124399359015;TGIF1:0.0111097423525;HAND1,2:-0.0480689511161;CDC5L:-0.0753068024304;ZNF384:-0.0792523994415;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.094845581857;MED-1{core}:-0.163679695492;PRDM1:-0.17723530856;HNF1A:-0.178640765382;SP1:-0.182068006107;RREB1:-0.203327526431;EP300:-0.204601280951;NFIL3:-0.242292839621;FOXD3:-0.268916179101;ZNF143:-0.301496952215;MYB:-0.301689789541;FOX{D1,D2}:-0.335140270934;ATF4:-0.336988657741;YY1:-0.338300726885;AHR_ARNT_ARNT2:-0.349836327307;CEBPA,B_DDIT3:-0.36190049429;BACH2:-0.380941437255;ELK1,4_GABP{A,B1}:-0.428305268376;CRX:-0.445690516487;NFE2:-0.479078151412;IRF1,2:-0.480403180435;TLX2:-0.508601315758;NRF1:-0.521672146886;XCPE1{core}:-0.526220752358;PAX3,7:-0.537264395166;RFX1:-0.539104261126;FOXM1:-0.55333846827;JUN:-0.570733948509;PAX2:-0.575697668541;NFKB1_REL_RELA:-0.595123116877;SNAI1..3:-0.617455560659;PRRX1,2:-0.625271781021;GFI1:-0.625636980152;GATA6:-0.640080208963;POU3F1..4:-0.644665605037;BREu{core}:-0.657324727552;FOS_FOS{B,L1}_JUN{B,D}:-0.664265227414;AIRE:-0.670336628334;ONECUT1,2:-0.671005393246;ATF2:-0.675682248935;ATF5_CREB3:-0.695211666605;FOSL2:-0.697724026362;RFX2..5_RFXANK_RFXAP:-0.703018829967;CREB1:-0.707680751474;SOX2:-0.712498669159;SPI1:-0.735102472303;ETS1,2:-0.739196694024;RUNX1..3:-0.747747491672;ZFP161:-0.755918351485;ELF1,2,4:-0.767988264969;SPIB:-0.776981709004;LMO2:-0.810584475136;RBPJ:-0.815763033448;NKX6-1,2:-0.826086980312;FOXP1:-0.843447204567;EGR1..3:-0.843984442261;DMAP1_NCOR{1,2}_SMARC:-0.865299829061;FOX{I1,J2}:-0.866580913165;IKZF2:-0.875062396849;STAT5{A,B}:-0.934825477359;IRF7:-0.936023065403;PDX1:-0.995855849473;PAX4:-1.00068936604;ZBTB16:-1.00730959158;NFY{A,B,C}:-1.04524943668;ZEB1:-1.05349278142;FOX{F1,F2,J1}:-1.08516344654;POU5F1:-1.10076459286;MYOD1:-1.14541153829;ADNP_IRX_SIX_ZHX:-1.1476910602;PBX1:-1.1867169811;PITX1..3:-1.22825235656;OCT4_SOX2{dimer}:-1.25342831127;TFDP1:-1.28021287511;CDX1,2,4:-1.29275472234;TOPORS:-1.30410531136;FOXN1:-1.31571105304;BPTF:-1.35230846179;T:-1.35485792853;LEF1_TCF7_TCF7L1,2:-1.45854681001;ALX1:-1.47339987609;PAX8:-1.4858445857;SOX{8,9,10}:-1.49315259959;HBP1_HMGB_SSRP1_UBTF:-1.5010250135;CUX2:-1.51589381886;E2F1..5:-1.5383539469;POU1F1:-1.60440203278;VSX1,2:-1.60801763566;NKX2-3_NKX2-5:-1.63902267617;NANOG:-1.67923918772;FOXQ1:-1.6962434076;POU2F1..3:-2.26159261065
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11475-119C8;search_select_hide=table117:FF:11475-119C8
}}
}}

Latest revision as of 18:03, 4 June 2020

Name:Adipocyte - omental, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12068
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueNA
dev stageNA
sexNA
ageNA
cell typeNA
cell lineNA
companyNA
collaborationNA
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.7

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004962
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12068 CAGE DRX008099 DRR008971
Accession ID Hg19

Library idBAMCTSS
CNhs12068 DRZ000396 DRZ001781
Accession ID Hg38

Library idBAMCTSS
CNhs12068 DRZ011746 DRZ013131
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004962
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10002.GTGAAA sRNA-Seq DRX037006 DRR041372
Accession ID Hg19

Library idBAMCTSS
SRhi10002.GTGAAA DRZ007014


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0428
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.44
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.772
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.16
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0.692
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.186
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0781
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.615
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0631
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0.796
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.229
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.16
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.16
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0.804
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.774
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0999
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.538
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.66
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.653
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.2
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.277
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.369
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0.16
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal1.116
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.861
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.369
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic1.116
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.616
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12068

Jaspar motifP-value
MA0002.20.146
MA0003.10.0938
MA0004.10.567
MA0006.10.201
MA0007.10.106
MA0009.10.209
MA0014.10.63
MA0017.10.801
MA0018.21.48979e-4
MA0019.10.231
MA0024.14.06575e-7
MA0025.10.00629
MA0027.10.275
MA0028.10.0232
MA0029.10.609
MA0030.10.148
MA0031.10.407
MA0035.20.338
MA0038.10.0822
MA0039.20.0375
MA0040.10.135
MA0041.10.269
MA0042.10.605
MA0043.10.00474
MA0046.10.167
MA0047.20.862
MA0048.10.724
MA0050.11.11013e-5
MA0051.10.012
MA0052.10.293
MA0055.10.841
MA0057.10.388
MA0058.10.593
MA0059.10.803
MA0060.11.00854e-6
MA0061.10.0532
MA0062.21.03187e-7
MA0065.20.101
MA0066.10.26
MA0067.10.0395
MA0068.10.688
MA0069.10.0761
MA0070.10.94
MA0071.10.0523
MA0072.10.497
MA0073.10.903
MA0074.10.429
MA0076.14.519e-4
MA0077.10.133
MA0078.10.916
MA0079.20.328
MA0080.22.50237e-7
MA0081.10.00494
MA0083.12.85159e-4
MA0084.10.857
MA0087.10.738
MA0088.10.92
MA0090.14.09086e-5
MA0091.10.0126
MA0092.10.0527
MA0093.10.455
MA0099.21.21868e-9
MA0100.10.422
MA0101.18.67926e-5
MA0102.20.102
MA0103.10.00611
MA0104.20.116
MA0105.10.274
MA0106.10.329
MA0107.11.11922e-4
MA0108.20.0454
MA0111.10.722
MA0112.25.59148e-4
MA0113.10.0202
MA0114.10.33
MA0115.10.0316
MA0116.10.885
MA0117.10.353
MA0119.10.236
MA0122.10.389
MA0124.10.0408
MA0125.10.263
MA0131.10.102
MA0135.10.913
MA0136.14.20809e-12
MA0137.20.929
MA0138.20.00849
MA0139.10.786
MA0140.10.446
MA0141.10.331
MA0142.10.0434
MA0143.10.749
MA0144.10.456
MA0145.10.0853
MA0146.10.223
MA0147.10.183
MA0148.10.571
MA0149.10.462
MA0150.10.0176
MA0152.10.0167
MA0153.10.594
MA0154.10.334
MA0155.10.0388
MA0156.13.6599e-11
MA0157.10.853
MA0159.10.241
MA0160.10.99
MA0162.10.0324
MA0163.10.08
MA0164.10.813
MA0258.10.148
MA0259.10.276



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12068

Novel motifP-value
10.856
100.842
1000.7
1010.267
1020.0512
1030.602
1040.768
1050.186
1060.182
1070.111
1080.327
1090.638
110.649
1100.614
1110.66
1120.207
1130.723
1140.518
1150.00808
1160.0649
1170.605
1180.564
1190.547
120.728
1200.673
1210.657
1220.36
1230.0599
1240.927
1250.0573
1260.783
1270.41
1280.231
1290.492
130.997
1300.885
1310.893
1320.39
1330.447
1340.456
1350.691
1360.234
1370.406
1380.7
1390.425
140.458
1400.084
1410.611
1420.6
1430.858
1440.903
1450.279
1460.96
1470.319
1480.562
1491.47989e-4
150.688
1500.674
1510.785
1520.0845
1530.761
1540.338
1550.0497
1560.168
1570.968
1580.0376
1590.754
160.00896
1600.37
1610.557
1620.583
1630.474
1640.192
1650.491
1660.0916
1670.316
1680.749
1690.018
170.469
180.385
190.00202
20.128
200.264
210.671
220.0504
230.12
240.403
250.429
260.94
270.275
280.152
290.781
30.772
300.155
310.335
329.69114e-15
330.661
340.596
350.566
360.0983
370.117
380.982
390.108
40.74
400.8
410.84
420.21
430.274
440.233
450.655
460.889
470.723
480.946
490.876
50.636
500.565
510.981
520.39
530.181
540.953
550.394
560.467
570.966
580.876
590.0761
60.721
600.348
610.556
620.761
630.313
640.865
650.176
660.0427
670.452
680.48
690.705
70.857
700.895
710.465
720.28
730.0304
740.623
750.776
760.494
770.00319
780.914
790.0541
80.42
800.456
810.469
820.307
830.483
840.21
850.00918
860.372
870.194
880.773
890.114
90.445
900.936
910.456
920.116
930.589
940.594
950.734
960.894
970.368
980.841
990.0233



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12068


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000255 (eukaryotic cell)
0000136 (fat cell)
0002615 (adipocyte of omentum tissue)

UBERON: Anatomy
0000468 (multi-cellular organism)
0003688 (omentum)
0002100 (trunk)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0004457 (cavity lining)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004923 (organ component layer)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002323 (body cavity)
0000042 (serous membrane)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0002417 (abdominal segment of trunk)
0002358 (peritoneum)
0000916 (abdomen)
0003684 (abdominal cavity)
0001178 (visceral peritoneum)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000039 (human adipocyte of omentum tissue sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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