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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005942
|DRA_sample_Accession=CAGE@SAMD00005942
|accession_numbers=CAGE;DRX008141;DRR009013;DRZ000438;DRZ001823
|accession_numbers=CAGE;DRX008141;DRR009013;DRZ000438;DRZ001823;DRZ011788;DRZ013173
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
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|fonse_treatment_closure=FF:0000625,FF:0000635,FF:0011104,FF:11868-125B5
|fonse_treatment_closure=FF:0000625,FF:0000635,FF:0011104,FF:11868-125B5
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Candida%252c%2520donor1.CNhs13473.11868-125B5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Candida%252c%2520donor1.CNhs13473.11868-125B5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Candida%252c%2520donor1.CNhs13473.11868-125B5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Candida%252c%2520donor1.CNhs13473.11868-125B5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Candida%252c%2520donor1.CNhs13473.11868-125B5.hg38.nobarcode.ctss.bed.gz
|id=FF:11868-125B5
|id=FF:11868-125B5
|is_a=EFO:0002091;;FF:0011104
|is_a=EFO:0002091;;FF:0011104
Line 47: Line 52:
|library_id=CNhs13473
|library_id=CNhs13473
|library_id_phase_based=2:CNhs13473
|library_id_phase_based=2:CNhs13473
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11868
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11868
|name=CD14+ monocytes - treated with Candida, donor1
|name=CD14+ monocytes - treated with Candida, donor1
|namespace=
|namespace=
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 92: Line 101:
|top_motifs=FOSL2:6.6547483015;FOS_FOS{B,L1}_JUN{B,D}:6.61195823621;BACH2:6.50403725152;NFE2:6.06738742754;HLF:6.03842711658;CEBPA,B_DDIT3:5.25486468868;NFE2L2:5.15724028733;PAX2:4.93935997125;NFKB1_REL_RELA:4.67240933402;NFIL3:4.4571400135;FOXP3:3.94439551436;SREBF1,2:3.83113163978;SPIB:3.7555491577;IRF1,2:3.65802172217;ATF5_CREB3:3.65784075468;ATF4:3.60887016535;SPI1:3.38628212686;NR1H4:3.32950840829;NFATC1..3:3.32173277597;IRF7:3.3020282177;PAX8:3.2944926342;NANOG{mouse}:3.18497124117;NFE2L1:3.17776430604;DMAP1_NCOR{1,2}_SMARC:3.17220768794;ETS1,2:3.01451790897;HSF1,2:2.9996010408;JUN:2.86986671179;CREB1:2.80451665813;HMGA1,2:2.71062751808;ATF6:2.70238930499;RUNX1..3:2.64682258548;PAX3,7:2.60340768601;MAFB:2.36314473995;ATF2:2.16061039404;STAT2,4,6:2.03302473958;STAT5{A,B}:2.0315028391;PAX1,9:2.03071573782;FOXN1:1.97866454604;HOX{A5,B5}:1.92444571462;HIF1A:1.69507885352;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.60953713198;FOXO1,3,4:1.34566823099;TGIF1:1.31325197113;BPTF:1.28691665082;CDX1,2,4:1.26586523786;XBP1:1.25755526066;RXRA_VDR{dimer}:1.24620533132;IKZF1:1.04595298721;ELF1,2,4:0.914435005908;DBP:0.859663486846;EN1,2:0.84201763227;ZBTB16:0.794782126656;EP300:0.790219818064;PDX1:0.687732190798;ALX4:0.572271963522;PPARG:0.540219791209;PAX4:0.531169256171;PRDM1:0.524557554657;TBP:0.423525715386;GLI1..3:0.378179253713;RORA:0.340350165676;NR3C1:0.337594296318;SRF:0.337335342767;PITX1..3:0.205833559438;VSX1,2:0.183970947009;NANOG:0.181228891664;POU2F1..3:0.150396639712;HMX1:0.13370156697;FOXL1:0.0863355116537;POU3F1..4:0.0378501612343;OCT4_SOX2{dimer}:-0.0120934506742;HBP1_HMGB_SSRP1_UBTF:-0.0439424266004;MEF2{A,B,C,D}:-0.0732875834287;FOXD3:-0.114480232384;IKZF2:-0.162790262351;TLX2:-0.193653248378;POU5F1:-0.200606839252;RFX2..5_RFXANK_RFXAP:-0.223486509135;HES1:-0.247151880205;HOXA9_MEIS1:-0.293331557984;NKX2-1,4:-0.363402000922;MYB:-0.392811588858;EGR1..3:-0.396886499332;ESR1:-0.397945708665;FOX{D1,D2}:-0.453072798629;NR6A1:-0.459350113805;GATA4:-0.544173483541;TFCP2:-0.632599934447;AHR_ARNT_ARNT2:-0.660803215156;RBPJ:-0.676340465673;NKX3-1:-0.72256794247;FOXM1:-0.727376854289;FOXP1:-0.798670938643;SMAD1..7,9:-0.874706234633;RXR{A,B,G}:-0.895042912843;T:-0.980466020851;NFIX:-1.00032745064;MZF1:-1.00138201207;SOX2:-1.00592118217;PAX6:-1.09605843695;POU6F1:-1.16382187054;STAT1,3:-1.31686511617;TAL1_TCF{3,4,12}:-1.32181528486;SPZ1:-1.35228385909;MED-1{core}:-1.35475421619;REST:-1.35485952152;TBX4,5:-1.37714974288;NKX6-1,2:-1.42908754214;NKX2-2,8:-1.43143706599;HNF1A:-1.46082756044;ALX1:-1.49836651553;ZNF384:-1.58963465075;PRRX1,2:-1.61501567899;ZNF238:-1.63927284152;BREu{core}:-1.64471811929;GZF1:-1.6515246447;RFX1:-1.67431756035;ESRRA:-1.67704742861;SOX5:-1.68219645716;HNF4A_NR2F1,2:-1.68805424266;NHLH1,2:-1.69224125479;ARID5B:-1.72473446769;MYFfamily:-1.72474322893;E2F1..5:-1.72954968547;TFAP4:-1.75093297006;TEF:-1.75558436953;TFDP1:-1.75733148774;ZFP161:-1.76630030634;ADNP_IRX_SIX_ZHX:-1.8093634107;HOX{A4,D4}:-1.82186832926;GATA6:-1.83528542977;CDC5L:-1.85642395687;FOXA2:-1.89008896426;MTE{core}:-1.89198838213;SP1:-1.90551294033;TEAD1:-1.94125697524;GTF2A1,2:-1.98758829373;SOX{8,9,10}:-1.99032226506;CUX2:-2.00676678769;CRX:-2.05125136091;ZBTB6:-2.11248851982;MAZ:-2.11580629924;RXR{A,B,G}_{NR1H2,PPAR}dimers:-2.12172496929;PATZ1:-2.12250165689;NKX2-3_NKX2-5:-2.15791569252;TFAP2B:-2.16323616357;TP53:-2.18592115903;MTF1:-2.19528041885;GTF2I:-2.27629582712;HOX{A6,A7,B6,B7}:-2.27773698154;GCM1,2:-2.39260982033;AIRE:-2.42984845408;ONECUT1,2:-2.43326854817;ZIC1..3:-2.44048846447;XCPE1{core}:-2.45934842734;FOX{F1,F2,J1}:-2.47326644758;NKX3-2:-2.50239040643;TLX1..3_NFIC{dimer}:-2.51222396138;MYBL2:-2.52406609044;RREB1:-2.53438243608;NFY{A,B,C}:-2.53616426525;TFAP2{A,C}:-2.59522039922;ZEB1:-2.62609914466;HIC1:-2.63773957997;GFI1B:-2.68173953674;ELK1,4_GABP{A,B1}:-2.68446442519;SNAI1..3:-2.74560862045;FOX{I1,J2}:-2.76560004772;ZNF148:-2.80940918811;SOX17:-2.8304881213;bHLH_family:-2.85079786538;UFEwm:-2.86409755158;PBX1:-2.98120808071;EBF1:-2.99800703601;MYOD1:-3.13888143694;EVI1:-3.17173700348;KLF4:-3.19486391981;FOXQ1:-3.30067528635;POU1F1:-3.402266184;NR5A1,2:-3.40784389604;NRF1:-3.52214731944;GFI1:-3.53518988011;LMO2:-3.64969161551;PAX5:-3.6501551618;ZNF423:-3.67946291854;AR:-3.80941823382;LEF1_TCF7_TCF7L1,2:-3.97524922516;LHX3,4:-4.00975962812;YY1:-4.06795013944;TOPORS:-4.11176793461;HAND1,2:-4.29303978579;ZNF143:-4.36345391839
|top_motifs=FOSL2:6.6547483015;FOS_FOS{B,L1}_JUN{B,D}:6.61195823621;BACH2:6.50403725152;NFE2:6.06738742754;HLF:6.03842711658;CEBPA,B_DDIT3:5.25486468868;NFE2L2:5.15724028733;PAX2:4.93935997125;NFKB1_REL_RELA:4.67240933402;NFIL3:4.4571400135;FOXP3:3.94439551436;SREBF1,2:3.83113163978;SPIB:3.7555491577;IRF1,2:3.65802172217;ATF5_CREB3:3.65784075468;ATF4:3.60887016535;SPI1:3.38628212686;NR1H4:3.32950840829;NFATC1..3:3.32173277597;IRF7:3.3020282177;PAX8:3.2944926342;NANOG{mouse}:3.18497124117;NFE2L1:3.17776430604;DMAP1_NCOR{1,2}_SMARC:3.17220768794;ETS1,2:3.01451790897;HSF1,2:2.9996010408;JUN:2.86986671179;CREB1:2.80451665813;HMGA1,2:2.71062751808;ATF6:2.70238930499;RUNX1..3:2.64682258548;PAX3,7:2.60340768601;MAFB:2.36314473995;ATF2:2.16061039404;STAT2,4,6:2.03302473958;STAT5{A,B}:2.0315028391;PAX1,9:2.03071573782;FOXN1:1.97866454604;HOX{A5,B5}:1.92444571462;HIF1A:1.69507885352;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.60953713198;FOXO1,3,4:1.34566823099;TGIF1:1.31325197113;BPTF:1.28691665082;CDX1,2,4:1.26586523786;XBP1:1.25755526066;RXRA_VDR{dimer}:1.24620533132;IKZF1:1.04595298721;ELF1,2,4:0.914435005908;DBP:0.859663486846;EN1,2:0.84201763227;ZBTB16:0.794782126656;EP300:0.790219818064;PDX1:0.687732190798;ALX4:0.572271963522;PPARG:0.540219791209;PAX4:0.531169256171;PRDM1:0.524557554657;TBP:0.423525715386;GLI1..3:0.378179253713;RORA:0.340350165676;NR3C1:0.337594296318;SRF:0.337335342767;PITX1..3:0.205833559438;VSX1,2:0.183970947009;NANOG:0.181228891664;POU2F1..3:0.150396639712;HMX1:0.13370156697;FOXL1:0.0863355116537;POU3F1..4:0.0378501612343;OCT4_SOX2{dimer}:-0.0120934506742;HBP1_HMGB_SSRP1_UBTF:-0.0439424266004;MEF2{A,B,C,D}:-0.0732875834287;FOXD3:-0.114480232384;IKZF2:-0.162790262351;TLX2:-0.193653248378;POU5F1:-0.200606839252;RFX2..5_RFXANK_RFXAP:-0.223486509135;HES1:-0.247151880205;HOXA9_MEIS1:-0.293331557984;NKX2-1,4:-0.363402000922;MYB:-0.392811588858;EGR1..3:-0.396886499332;ESR1:-0.397945708665;FOX{D1,D2}:-0.453072798629;NR6A1:-0.459350113805;GATA4:-0.544173483541;TFCP2:-0.632599934447;AHR_ARNT_ARNT2:-0.660803215156;RBPJ:-0.676340465673;NKX3-1:-0.72256794247;FOXM1:-0.727376854289;FOXP1:-0.798670938643;SMAD1..7,9:-0.874706234633;RXR{A,B,G}:-0.895042912843;T:-0.980466020851;NFIX:-1.00032745064;MZF1:-1.00138201207;SOX2:-1.00592118217;PAX6:-1.09605843695;POU6F1:-1.16382187054;STAT1,3:-1.31686511617;TAL1_TCF{3,4,12}:-1.32181528486;SPZ1:-1.35228385909;MED-1{core}:-1.35475421619;REST:-1.35485952152;TBX4,5:-1.37714974288;NKX6-1,2:-1.42908754214;NKX2-2,8:-1.43143706599;HNF1A:-1.46082756044;ALX1:-1.49836651553;ZNF384:-1.58963465075;PRRX1,2:-1.61501567899;ZNF238:-1.63927284152;BREu{core}:-1.64471811929;GZF1:-1.6515246447;RFX1:-1.67431756035;ESRRA:-1.67704742861;SOX5:-1.68219645716;HNF4A_NR2F1,2:-1.68805424266;NHLH1,2:-1.69224125479;ARID5B:-1.72473446769;MYFfamily:-1.72474322893;E2F1..5:-1.72954968547;TFAP4:-1.75093297006;TEF:-1.75558436953;TFDP1:-1.75733148774;ZFP161:-1.76630030634;ADNP_IRX_SIX_ZHX:-1.8093634107;HOX{A4,D4}:-1.82186832926;GATA6:-1.83528542977;CDC5L:-1.85642395687;FOXA2:-1.89008896426;MTE{core}:-1.89198838213;SP1:-1.90551294033;TEAD1:-1.94125697524;GTF2A1,2:-1.98758829373;SOX{8,9,10}:-1.99032226506;CUX2:-2.00676678769;CRX:-2.05125136091;ZBTB6:-2.11248851982;MAZ:-2.11580629924;RXR{A,B,G}_{NR1H2,PPAR}dimers:-2.12172496929;PATZ1:-2.12250165689;NKX2-3_NKX2-5:-2.15791569252;TFAP2B:-2.16323616357;TP53:-2.18592115903;MTF1:-2.19528041885;GTF2I:-2.27629582712;HOX{A6,A7,B6,B7}:-2.27773698154;GCM1,2:-2.39260982033;AIRE:-2.42984845408;ONECUT1,2:-2.43326854817;ZIC1..3:-2.44048846447;XCPE1{core}:-2.45934842734;FOX{F1,F2,J1}:-2.47326644758;NKX3-2:-2.50239040643;TLX1..3_NFIC{dimer}:-2.51222396138;MYBL2:-2.52406609044;RREB1:-2.53438243608;NFY{A,B,C}:-2.53616426525;TFAP2{A,C}:-2.59522039922;ZEB1:-2.62609914466;HIC1:-2.63773957997;GFI1B:-2.68173953674;ELK1,4_GABP{A,B1}:-2.68446442519;SNAI1..3:-2.74560862045;FOX{I1,J2}:-2.76560004772;ZNF148:-2.80940918811;SOX17:-2.8304881213;bHLH_family:-2.85079786538;UFEwm:-2.86409755158;PBX1:-2.98120808071;EBF1:-2.99800703601;MYOD1:-3.13888143694;EVI1:-3.17173700348;KLF4:-3.19486391981;FOXQ1:-3.30067528635;POU1F1:-3.402266184;NR5A1,2:-3.40784389604;NRF1:-3.52214731944;GFI1:-3.53518988011;LMO2:-3.64969161551;PAX5:-3.6501551618;ZNF423:-3.67946291854;AR:-3.80941823382;LEF1_TCF7_TCF7L1,2:-3.97524922516;LHX3,4:-4.00975962812;YY1:-4.06795013944;TOPORS:-4.11176793461;HAND1,2:-4.29303978579;ZNF143:-4.36345391839
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11868-125B5;search_select_hide=table117:FF:11868-125B5
}}
}}

Latest revision as of 18:24, 4 June 2020

Name:CD14+ monocytes - treated with Candida, donor1
Species:Human (Homo sapiens)
Library ID:CNhs13473
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueNA
dev stageNA
sexfemale
age69
cell typemonocyte
cell lineNA
companyNA
collaborationChristine Wells (University of Queensland)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberD3-9
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005942
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13473 CAGE DRX008141 DRR009013
Accession ID Hg19

Library idBAMCTSS
CNhs13473 DRZ000438 DRZ001823
Accession ID Hg38

Library idBAMCTSS
CNhs13473 DRZ011788 DRZ013173
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral1.055
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0622
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.648
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.459
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.129
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.129
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.308
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.487
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.783
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.308
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.83
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0.648
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0.228
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.516
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.489
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0646
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.533
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.376
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0.533
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.638
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.487
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.409
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0.533
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.792
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0.435
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory1.018
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.435
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.829
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.967
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.741
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.487
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.415
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.765
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0.487
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.575
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.704
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature1.002
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340.435
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.858
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.194
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.326
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.533
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0.308
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.435
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0.575
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0.648
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0.376
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.16
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.251
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340.376
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0.228
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13473

Jaspar motifP-value
MA0002.23.6418e-8
MA0003.10.98
MA0004.10.155
MA0006.10.818
MA0007.10.84
MA0009.10.497
MA0014.10.718
MA0017.10.249
MA0018.20.042
MA0019.10.548
MA0024.10.00303
MA0025.10.00121
MA0027.10.989
MA0028.10.0915
MA0029.10.142
MA0030.10.155
MA0031.10.326
MA0035.20.264
MA0038.10.608
MA0039.20.705
MA0040.10.724
MA0041.10.886
MA0042.10.439
MA0043.14.87361e-9
MA0046.10.00776
MA0047.20.264
MA0048.10.484
MA0050.13.8026e-11
MA0051.14.28228e-5
MA0052.10.00693
MA0055.10.33
MA0057.10.339
MA0058.10.0547
MA0059.10.0929
MA0060.16.66218e-8
MA0061.16.42839e-16
MA0062.20.798
MA0065.20.047
MA0066.10.0335
MA0067.16.24027e-7
MA0068.10.903
MA0069.10.796
MA0070.10.0202
MA0071.10.445
MA0072.10.602
MA0073.10.461
MA0074.10.114
MA0076.10.111
MA0077.10.282
MA0078.10.421
MA0079.20.113
MA0080.26.63657e-11
MA0081.15.97265e-4
MA0083.10.907
MA0084.10.656
MA0087.10.853
MA0088.10.482
MA0090.10.516
MA0091.10.708
MA0092.10.389
MA0093.10.203
MA0099.23.52211e-46
MA0100.10.822
MA0101.13.51463e-18
MA0102.21.40013e-9
MA0103.10.0583
MA0104.20.196
MA0105.16.77176e-21
MA0106.10.758
MA0107.11.16677e-21
MA0108.20.568
MA0111.10.472
MA0112.27.0498e-4
MA0113.10.971
MA0114.10.278
MA0115.10.639
MA0116.16.00074e-4
MA0117.10.0496
MA0119.10.156
MA0122.10.837
MA0124.10.488
MA0125.10.198
MA0131.10.467
MA0135.10.245
MA0136.17.74312e-12
MA0137.20.444
MA0138.20.322
MA0139.10.685
MA0140.10.379
MA0141.10.198
MA0142.10.802
MA0143.10.892
MA0144.10.177
MA0145.10.688
MA0146.10.654
MA0147.10.312
MA0148.10.575
MA0149.10.258
MA0150.16.79015e-21
MA0152.10.946
MA0153.10.00148
MA0154.12.51303e-4
MA0155.10.866
MA0156.19.71287e-8
MA0157.10.872
MA0159.10.0524
MA0160.10.0782
MA0162.10.901
MA0163.11.72668e-7
MA0164.10.653
MA0258.10.02
MA0259.10.968



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13473

Novel motifP-value
10.113
100.0196
1000.976
1010.816
1020.997
1030.305
1040.478
1050.083
1067.66745e-4
1070.254
1080.626
1090.38
110.185
1100.154
1110.0633
1120.366
1130.466
1140.0265
1150.228
1160.99
1170.0626
1180.2
1190.195
120.353
1200.822
1210.574
1220.646
1230.274
1240.451
1250.284
1260.233
1270.588
1280.0478
1290.46
130.0756
1300.244
1310.818
1320.0616
1330.564
1340.525
1350.878
1360.96
1370.0414
1380.381
1390.0907
140.512
1400.277
1410.349
1420.0132
1430.0237
1440.591
1450.298
1460.851
1470.873
1480.00996
1490.866
150.167
1500.313
1510.471
1520.448
1530.537
1540.665
1550.919
1560.727
1570.506
1580.0391
1590.156
160.367
1600.401
1610.55
1620.231
1630.0772
1640.106
1650.317
1660.693
1670.213
1680.203
1690.0209
170.258
180.103
190.546
20.333
200.151
210.773
220.401
230.049
240.473
250.508
260.0782
270.382
280.414
290.22
30.142
300.381
310.758
320.402
330.189
340.863
350.0952
360.0526
370.0798
380.372
390.85
40.711
400.17
410.0129
420.359
430.0217
440.536
450.838
460.216
470.643
480.582
490.122
50.321
500.97
510.543
520.463
530.636
540.507
550.615
560.685
570.873
580.195
590.314
60.781
600.0643
610.702
620.115
630.552
640.446
650.237
660.245
670.46
680.718
690.355
70.264
700.0764
710.0285
720.149
730.223
740.0461
750.131
760.112
770.629
780.108
790.611
80.414
800.254
810.323
820.291
830.0118
840.0868
850.045
860.0768
870.575
880.781
890.311
90.421
900.131
910.4
920.427
930.637
940.099
950.377
960.367
970.528
980.107
990.0391



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13473


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000635 (Candida treatment sample)
0011104 (human CD14-positive monocytes - treated with Candida sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

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