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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004856
|DRA_sample_Accession=CAGE@SAMD00004856
|accession_numbers=CAGE;DRX008695;DRR009567;DRZ000992;DRZ002377
|accession_numbers=CAGE;DRX008695;DRR009567;DRZ000992;DRZ002377;DRZ012342;DRZ013727
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0003112,UBERON:0000033,UBERON:0000479,UBERON:0010314,UBERON:0011216,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000075,UBERON:0011158,UBERON:0011159,UBERON:0010317,UBERON:0000153,UBERON:0007811,UBERON:0002204,UBERON:0001434,UBERON:0003128,UBERON:0011137,UBERON:0001703,UBERON:0002241,UBERON:0010323,UBERON:0003129
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0003112,UBERON:0000033,UBERON:0000479,UBERON:0010314,UBERON:0011216,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000075,UBERON:0011158,UBERON:0011159,UBERON:0010317,UBERON:0000153,UBERON:0007811,UBERON:0002204,UBERON:0001434,UBERON:0003128,UBERON:0011137,UBERON:0001703,UBERON:0002241,UBERON:0010323,UBERON:0003129
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
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|microRNAs=
|microRNAs=
|microRNAs_nn=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#cage;sample;10195
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10195
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#cage;sample;10195
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10195
|name=olfactory region, adult
|name=olfactory region, adult
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 101: Line 101:
|top_motifs=RREB1:3.92473397289;MYFfamily:3.84700927225;REST:3.84482393066;NHLH1,2:3.76334173896;GATA4:3.67568729627;ZFP161:3.38964711716;EGR1..3:3.3851015853;PRDM1:3.3647233962;ZBTB6:3.35743541663;CUX2:3.29296448355;AHR_ARNT_ARNT2:3.29054591054;DBP:3.21211156656;PRRX1,2:3.16461991672;MTE{core}:3.16232754613;PAX6:3.13170185705;MED-1{core}:3.12256929424;HOXA9_MEIS1:2.99841738333;GTF2I:2.83829455178;RFX1:2.83205570776;MTF1:2.80883788681;PAX5:2.76681735933;ATF2:2.76580200957;FOXM1:2.73036005867;KLF4:2.72884497346;OCT4_SOX2{dimer}:2.68002137754;TFAP2B:2.61784185176;MZF1:2.56709109442;NKX3-2:2.54663955474;ZNF384:2.53410534958;HIC1:2.4359612451;POU5F1:2.39616589254;SOX2:2.37897564763;SMAD1..7,9:2.19112574989;SOX5:2.17536686781;PAX4:2.15041939091;BREu{core}:2.1325895835;ARID5B:2.11258350166;RFX2..5_RFXANK_RFXAP:2.10889830204;HOX{A4,D4}:2.07906209132;POU6F1:2.07576344724;CDC5L:2.06019593688;PATZ1:2.04298642114;ALX1:2.03753840509;FOXQ1:1.96358829008;MAZ:1.93312362972;GFI1B:1.92649627323;LMO2:1.90673589224;HMGA1,2:1.8788790327;GCM1,2:1.82817982087;HBP1_HMGB_SSRP1_UBTF:1.79078383442;TGIF1:1.7864771924;IKZF2:1.7198872108;NFIX:1.71064807341;BPTF:1.7051446444;FOXD3:1.67294398315;TFDP1:1.6604586065;RBPJ:1.62304935006;SOX{8,9,10}:1.61868999895;NRF1:1.56914565444;NKX6-1,2:1.55237861315;POU3F1..4:1.53308731824;JUN:1.52228106765;LEF1_TCF7_TCF7L1,2:1.52123549499;FOXP3:1.50631794533;FOXP1:1.48794395893;NANOG:1.44486142815;EP300:1.4352960856;EBF1:1.42732571605;SOX17:1.34113483095;MAFB:1.31008967634;XBP1:1.28050927898;NFIL3:1.26623572313;TEF:1.23675493766;POU1F1:1.19303753387;FOX{F1,F2,J1}:1.18650299512;ONECUT1,2:1.13118597502;NKX2-3_NKX2-5:1.12035973733;ZIC1..3:1.0452047159;HAND1,2:1.02902929459;NR3C1:1.00546271636;GTF2A1,2:0.908963666952;ADNP_IRX_SIX_ZHX:0.903466387335;ZBTB16:0.876828054754;ESRRA:0.851073911025;ZNF423:0.830687543816;MYOD1:0.803722828262;TFAP2{A,C}:0.771013828731;ZNF238:0.768609109237;SP1:0.757108156511;ZNF143:0.690675908614;UFEwm:0.673469641881;TOPORS:0.672877591587;SPZ1:0.658562466745;ZEB1:0.638304716333;GZF1:0.625319154469;SREBF1,2:0.543280887017;PAX1,9:0.518543739004;YY1:0.504031261923;AR:0.493301851325;HMX1:0.4805019978;CRX:0.47324034455;TLX1..3_NFIC{dimer}:0.472768431233;T:0.438705458941;MEF2{A,B,C,D}:0.429575501162;CREB1:0.423645137017;MYBL2:0.354207194839;FOX{D1,D2}:0.34790625307;STAT1,3:0.330713462685;GFI1:0.312300086693;FOXL1:0.233809404755;TLX2:0.23039580734;FOXA2:0.106082932164;ATF5_CREB3:0.0914427817415;IRF7:0.0726542888226;XCPE1{core}:0.0287619746885;VSX1,2:-0.00652322360752;ATF4:-0.0104255448847;FOXO1,3,4:-0.0135206920434;IKZF1:-0.0182860380225;RORA:-0.0399424510156;EVI1:-0.058163640732;TBX4,5:-0.0604240667647;PBX1:-0.0611702772443;FOXN1:-0.0648821416034;PAX2:-0.0858814829499;IRF1,2:-0.0908906113516;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.1268542367;AIRE:-0.144499078359;FOX{I1,J2}:-0.153903780366;LHX3,4:-0.159895755264;HOX{A6,A7,B6,B7}:-0.175067477276;NFY{A,B,C}:-0.216284421324;NFATC1..3:-0.283683024195;SNAI1..3:-0.333734356198;NFE2L2:-0.350976891224;NKX3-1:-0.365261561229;PDX1:-0.386180406098;CDX1,2,4:-0.398398203421;PAX3,7:-0.406947971107;STAT2,4,6:-0.410544375286;DMAP1_NCOR{1,2}_SMARC:-0.41952999704;SPI1:-0.479527366185;PAX8:-0.534587255117;bHLH_family:-0.542549117095;NFE2L1:-0.548366669394;NR1H4:-0.625730281569;NANOG{mouse}:-0.629285789022;CEBPA,B_DDIT3:-0.722582028959;NFE2:-0.731668339344;HNF4A_NR2F1,2:-0.786943183604;PITX1..3:-0.791072718684;ESR1:-0.805028748471;HSF1,2:-0.816911555908;TFAP4:-0.821136783439;ZNF148:-0.841893897425;ATF6:-0.851857685627;SPIB:-0.912690243055;GATA6:-0.932898911291;NR5A1,2:-0.956217483955;NKX2-1,4:-1.00236665221;TEAD1:-1.02310635953;HNF1A:-1.02747038641;TP53:-1.03390186045;ETS1,2:-1.08730175028;TFCP2:-1.09521930444;FOSL2:-1.10689037231;NKX2-2,8:-1.15868389567;TAL1_TCF{3,4,12}:-1.15910525939;BACH2:-1.16596299135;RXR{A,B,G}:-1.17992113641;RUNX1..3:-1.21467362023;FOS_FOS{B,L1}_JUN{B,D}:-1.2694972486;E2F1..5:-1.30914306441;ALX4:-1.34733617511;PPARG:-1.36828193513;NFKB1_REL_RELA:-1.36958422365;ELK1,4_GABP{A,B1}:-1.41164869637;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.41845199615;SRF:-1.41884615267;RXRA_VDR{dimer}:-1.439722407;TBP:-1.52398332198;POU2F1..3:-1.53375314309;GLI1..3:-1.54443836971;MYB:-1.57396750593;HLF:-1.72198173202;HIF1A:-1.79825653057;ELF1,2,4:-1.86462185596;NR6A1:-1.94881233819;STAT5{A,B}:-2.23623233276;HES1:-2.32283173286;HOX{A5,B5}:-2.50536385042;EN1,2:-2.92876358389
|top_motifs=RREB1:3.92473397289;MYFfamily:3.84700927225;REST:3.84482393066;NHLH1,2:3.76334173896;GATA4:3.67568729627;ZFP161:3.38964711716;EGR1..3:3.3851015853;PRDM1:3.3647233962;ZBTB6:3.35743541663;CUX2:3.29296448355;AHR_ARNT_ARNT2:3.29054591054;DBP:3.21211156656;PRRX1,2:3.16461991672;MTE{core}:3.16232754613;PAX6:3.13170185705;MED-1{core}:3.12256929424;HOXA9_MEIS1:2.99841738333;GTF2I:2.83829455178;RFX1:2.83205570776;MTF1:2.80883788681;PAX5:2.76681735933;ATF2:2.76580200957;FOXM1:2.73036005867;KLF4:2.72884497346;OCT4_SOX2{dimer}:2.68002137754;TFAP2B:2.61784185176;MZF1:2.56709109442;NKX3-2:2.54663955474;ZNF384:2.53410534958;HIC1:2.4359612451;POU5F1:2.39616589254;SOX2:2.37897564763;SMAD1..7,9:2.19112574989;SOX5:2.17536686781;PAX4:2.15041939091;BREu{core}:2.1325895835;ARID5B:2.11258350166;RFX2..5_RFXANK_RFXAP:2.10889830204;HOX{A4,D4}:2.07906209132;POU6F1:2.07576344724;CDC5L:2.06019593688;PATZ1:2.04298642114;ALX1:2.03753840509;FOXQ1:1.96358829008;MAZ:1.93312362972;GFI1B:1.92649627323;LMO2:1.90673589224;HMGA1,2:1.8788790327;GCM1,2:1.82817982087;HBP1_HMGB_SSRP1_UBTF:1.79078383442;TGIF1:1.7864771924;IKZF2:1.7198872108;NFIX:1.71064807341;BPTF:1.7051446444;FOXD3:1.67294398315;TFDP1:1.6604586065;RBPJ:1.62304935006;SOX{8,9,10}:1.61868999895;NRF1:1.56914565444;NKX6-1,2:1.55237861315;POU3F1..4:1.53308731824;JUN:1.52228106765;LEF1_TCF7_TCF7L1,2:1.52123549499;FOXP3:1.50631794533;FOXP1:1.48794395893;NANOG:1.44486142815;EP300:1.4352960856;EBF1:1.42732571605;SOX17:1.34113483095;MAFB:1.31008967634;XBP1:1.28050927898;NFIL3:1.26623572313;TEF:1.23675493766;POU1F1:1.19303753387;FOX{F1,F2,J1}:1.18650299512;ONECUT1,2:1.13118597502;NKX2-3_NKX2-5:1.12035973733;ZIC1..3:1.0452047159;HAND1,2:1.02902929459;NR3C1:1.00546271636;GTF2A1,2:0.908963666952;ADNP_IRX_SIX_ZHX:0.903466387335;ZBTB16:0.876828054754;ESRRA:0.851073911025;ZNF423:0.830687543816;MYOD1:0.803722828262;TFAP2{A,C}:0.771013828731;ZNF238:0.768609109237;SP1:0.757108156511;ZNF143:0.690675908614;UFEwm:0.673469641881;TOPORS:0.672877591587;SPZ1:0.658562466745;ZEB1:0.638304716333;GZF1:0.625319154469;SREBF1,2:0.543280887017;PAX1,9:0.518543739004;YY1:0.504031261923;AR:0.493301851325;HMX1:0.4805019978;CRX:0.47324034455;TLX1..3_NFIC{dimer}:0.472768431233;T:0.438705458941;MEF2{A,B,C,D}:0.429575501162;CREB1:0.423645137017;MYBL2:0.354207194839;FOX{D1,D2}:0.34790625307;STAT1,3:0.330713462685;GFI1:0.312300086693;FOXL1:0.233809404755;TLX2:0.23039580734;FOXA2:0.106082932164;ATF5_CREB3:0.0914427817415;IRF7:0.0726542888226;XCPE1{core}:0.0287619746885;VSX1,2:-0.00652322360752;ATF4:-0.0104255448847;FOXO1,3,4:-0.0135206920434;IKZF1:-0.0182860380225;RORA:-0.0399424510156;EVI1:-0.058163640732;TBX4,5:-0.0604240667647;PBX1:-0.0611702772443;FOXN1:-0.0648821416034;PAX2:-0.0858814829499;IRF1,2:-0.0908906113516;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.1268542367;AIRE:-0.144499078359;FOX{I1,J2}:-0.153903780366;LHX3,4:-0.159895755264;HOX{A6,A7,B6,B7}:-0.175067477276;NFY{A,B,C}:-0.216284421324;NFATC1..3:-0.283683024195;SNAI1..3:-0.333734356198;NFE2L2:-0.350976891224;NKX3-1:-0.365261561229;PDX1:-0.386180406098;CDX1,2,4:-0.398398203421;PAX3,7:-0.406947971107;STAT2,4,6:-0.410544375286;DMAP1_NCOR{1,2}_SMARC:-0.41952999704;SPI1:-0.479527366185;PAX8:-0.534587255117;bHLH_family:-0.542549117095;NFE2L1:-0.548366669394;NR1H4:-0.625730281569;NANOG{mouse}:-0.629285789022;CEBPA,B_DDIT3:-0.722582028959;NFE2:-0.731668339344;HNF4A_NR2F1,2:-0.786943183604;PITX1..3:-0.791072718684;ESR1:-0.805028748471;HSF1,2:-0.816911555908;TFAP4:-0.821136783439;ZNF148:-0.841893897425;ATF6:-0.851857685627;SPIB:-0.912690243055;GATA6:-0.932898911291;NR5A1,2:-0.956217483955;NKX2-1,4:-1.00236665221;TEAD1:-1.02310635953;HNF1A:-1.02747038641;TP53:-1.03390186045;ETS1,2:-1.08730175028;TFCP2:-1.09521930444;FOSL2:-1.10689037231;NKX2-2,8:-1.15868389567;TAL1_TCF{3,4,12}:-1.15910525939;BACH2:-1.16596299135;RXR{A,B,G}:-1.17992113641;RUNX1..3:-1.21467362023;FOS_FOS{B,L1}_JUN{B,D}:-1.2694972486;E2F1..5:-1.30914306441;ALX4:-1.34733617511;PPARG:-1.36828193513;NFKB1_REL_RELA:-1.36958422365;ELK1,4_GABP{A,B1}:-1.41164869637;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.41845199615;SRF:-1.41884615267;RXRA_VDR{dimer}:-1.439722407;TBP:-1.52398332198;POU2F1..3:-1.53375314309;GLI1..3:-1.54443836971;MYB:-1.57396750593;HLF:-1.72198173202;HIF1A:-1.79825653057;ELF1,2,4:-1.86462185596;NR6A1:-1.94881233819;STAT5{A,B}:-2.23623233276;HES1:-2.32283173286;HOX{A5,B5}:-2.50536385042;EN1,2:-2.92876358389
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10195-103E6;search_select_hide=table117:FF:10195-103E6
}}
}}

Latest revision as of 12:26, 3 June 2020

Name:olfactory region, adult
Species:Human (Homo sapiens)
Library ID:CNhs12611
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueolfactory apparatus
dev stageNA
sexfemale
age87
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyBiochain
collaborationNA
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberR1234063-10
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004856
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12611 CAGE DRX008695 DRR009567
Accession ID Hg19

Library idBAMCTSS
CNhs12611 DRZ000992 DRZ002377
Accession ID Hg38

Library idBAMCTSS
CNhs12611 DRZ012342 DRZ013727
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0.39
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.52
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.314
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0.065
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.216
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0.491
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.065
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.122
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.00552
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0.257
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0.327
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0.172
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.065
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.175
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.707
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.065
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0124
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0486
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0.122
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.122
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0258
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.847
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0.065
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.122
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0.39
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.065
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0.122
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0.573
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0.592
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0128
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0769
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.626
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.065
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0.443
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0.43
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.54
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.796
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.823
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.122
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0.172
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.172
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0.702
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0.513
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0.172
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0.468
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0.065
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.065
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0.513
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12611

Jaspar motifP-value
MA0002.20.0327
MA0003.10.299
MA0004.10.332
MA0006.10.282
MA0007.10.205
MA0009.10.155
MA0014.10.565
MA0017.10.00183
MA0018.20.391
MA0019.10.774
MA0024.10.912
MA0025.10.67
MA0027.10.647
MA0028.10.0364
MA0029.10.0135
MA0030.10.74
MA0031.10.523
MA0035.20.00779
MA0038.10.496
MA0039.20.0913
MA0040.10.887
MA0041.10.78
MA0042.10.952
MA0043.10.513
MA0046.10.00206
MA0047.20.0242
MA0048.10.111
MA0050.10.0178
MA0051.10.0851
MA0052.10.771
MA0055.10.00109
MA0057.11
MA0058.10.264
MA0059.10.0844
MA0060.10.882
MA0061.10.00564
MA0062.20.00129
MA0065.26.53584e-4
MA0066.10.0159
MA0067.10.966
MA0068.10.56
MA0069.10.488
MA0070.10.674
MA0071.10.0221
MA0072.10.174
MA0073.10.426
MA0074.10.217
MA0076.10.071
MA0077.10.31
MA0078.10.858
MA0079.20.633
MA0080.22.50156e-9
MA0081.10.0254
MA0083.10.025
MA0084.10.777
MA0087.10.755
MA0088.10.156
MA0090.10.303
MA0091.10.586
MA0092.10.429
MA0093.10.327
MA0099.23.45179e-20
MA0100.10.551
MA0101.17.31694e-4
MA0102.20.0483
MA0103.10.23
MA0104.20.403
MA0105.10.00161
MA0106.10.0228
MA0107.10.00149
MA0108.20.254
MA0111.10.549
MA0112.20.00108
MA0113.10.286
MA0114.10.00239
MA0115.10.742
MA0116.10.00696
MA0117.10.894
MA0119.10.0839
MA0122.10.6
MA0124.10.596
MA0125.10.351
MA0131.10.852
MA0135.10.0665
MA0136.11.47971e-14
MA0137.20.252
MA0138.20.204
MA0139.10.407
MA0140.12.89402e-4
MA0141.10.00705
MA0142.10.965
MA0143.10.523
MA0144.10.213
MA0145.10.172
MA0146.10.012
MA0147.10.288
MA0148.10.0492
MA0149.10.017
MA0150.17.09415e-5
MA0152.10.651
MA0153.10.128
MA0154.10.048
MA0155.10.643
MA0156.11.53101e-9
MA0157.10.317
MA0159.10.00568
MA0160.10.0097
MA0162.10.14
MA0163.12.4137e-5
MA0164.10.827
MA0258.10.0124
MA0259.10.81



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12611

Novel motifP-value
10.0512
100.0448
1000.309
1010.416
1020.751
1030.209
1040.156
1050.117
1060.0453
1070.13
1080.905
1090.00273
110.0127
1100.0495
1110.152
1120.51
1130.395
1140.212
1150.918
1160.233
1170.00954
1180.151
1190.227
120.472
1200.253
1210.291
1220.922
1230.788
1240.0747
1250.2
1260.0223
1270.598
1280.241
1290.574
137.90152e-4
1300.16
1310.121
1320.59
1330.0329
1340.511
1350.172
1360.002
1370.751
1380.876
1390.19
140.785
1400.653
1410.649
1420.952
1430.0683
1440.949
1450.103
1460.415
1470.767
1480.299
1490.336
150.0598
1500.142
1510.617
1520.0765
1530.909
1540.46
1550.748
1560.332
1570.437
1580.206
1590.0126
160.0537
1600.285
1610.286
1620.7
1630.745
1640.0394
1650.0379
1660.914
1670.821
1680.542
1690.0107
170.154
180.171
190.186
20.95
200.106
210.0947
220.214
230.425
240.0356
250.44
261.23383e-4
270.919
280.639
290.00978
30.0333
300.805
310.963
320.0565
330.0418
340.648
350.61
360.137
370.027
380.326
390.204
40.744
400.0261
410.337
420.18
430.105
440.317
450.686
460.083
470.0676
480.0555
490.194
50.534
500.293
510.497
520.586
530.909
540.414
550.613
560.451
570.324
580.307
590.108
60.778
600.0657
610.0605
620.197
630.174
640.217
650.268
660.114
670.321
680.177
690.529
70.0439
700.0497
710.00961
720.345
730.0228
740.85
750.0287
760.398
770.2
780.00159
790.482
80.0756
800.545
810.722
820.604
830.0384
840.546
850.264
860.167
871.31517e-4
880.839
890.616
90.378
900.112
910.781
920.604
930.951
940.156
950.0091
960.974
970.682
980.307
990.66



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12611


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0003112 (olfactory region)
0000033 (head)
0000479 (tissue)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000075 (subdivision of skeletal system)
0011158 (primary subdivision of skull)
0011159 (primary subdivision of cranial skeletal system)
0010317 (germ layer / neural crest derived structure)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0003128 (cranium)
0011137 (axial skeletal system)
0001703 (neurocranium)
0002241 (chondrocranium)
0010323 (cranial skeletal system)
0003129 (skull)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010195 (human olfactory region - adult sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

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