FFCP PHASE1:Hg19::chr1:40254482..40254550,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:40254482..40254550,- to FFCP PHASE1:Hg19::chr1:40254482..40254550,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=656 | |EntrezGene=656 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1075 | |HGNC=1075 | ||
|TSSclassifier=strong | |||
|UniProt=P34820,E7EMY8,Q32NE5 | |UniProt=P34820,E7EMY8,Q32NE5 | ||
|association_with_transcript=0bp_to_ENST00000372827,ENST00000397360,NM_001720,uc001cdz.1,uc001cea.1_5end | |||
|cluster_id=chr1:40254482..40254550,- | |||
|coexpression_cluster_id=C132 | |||
|description=CAGE_peak_1_at_BMP8B_5end | |||
|id=chr1:40254482..40254550,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0008947;2.26e-07;29 | |||
|ontology_enrichment_disease=DOID:305!8.19e-15!106;DOID:0050687!1.94e-12!143;DOID:162!2.35e-10!235;DOID:14566!3.55e-09!239;DOID:299!9.33e-07!25 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.19e-13,106;DOID:0050687,3.29e-10,143;DOID:162,8.52e-09,235;DOID:14566,4.99e-08,239 | |||
|ontology_enrichment_uberon=UBERON:0007023!7.94e-25!115;UBERON:0001049!3.00e-11!57;UBERON:0005068!3.00e-11!57;UBERON:0006241!3.00e-11!57;UBERON:0007135!3.00e-11!57;UBERON:0002780!5.35e-11!41;UBERON:0001890!5.35e-11!41;UBERON:0006240!5.35e-11!41;UBERON:0003080!2.49e-10!42;UBERON:0000062!2.99e-09!511;UBERON:0005743!1.10e-08!86;UBERON:0001893!1.68e-08!34;UBERON:0002791!3.39e-08!33;UBERON:0001017!3.95e-08!82;UBERON:0002020!4.54e-08!34;UBERON:0003528!4.54e-08!34;UBERON:0000489!9.23e-08!32;UBERON:0002616!1.36e-07!59;UBERON:0000073!1.59e-07!94;UBERON:0001016!1.59e-07!94;UBERON:0001869!1.68e-07!32;UBERON:0003075!1.76e-07!86;UBERON:0007284!1.76e-07!86;UBERON:0000955!2.32e-07!69;UBERON:0006238!2.32e-07!69;UBERON:0005409!7.62e-07!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;3.19e-09;41!UBERON:0001890;3.19e-09;41!UBERON:0001893;8.74e-08;34!UBERON:0000489;8.76e-08;29!UBERON:0003528;1.16e-07;34!UBERON:0002020;1.16e-07;34!UBERON:0002791;2.05e-07;32!UBERON:0001869;2.78e-07;32!UBERON:0001950;3.39e-07;20!UBERON:0002619;3.62e-07;22!UBERON:0000073;4.06e-07;53!UBERON:0002616;4.06e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.26e-23,114;UBERON:0001049,6.88e-13,56;UBERON:0005068,6.88e-13,56;UBERON:0006241,6.88e-13,56;UBERON:0007135,6.88e-13,56;UBERON:0002780,8.16e-13,41;UBERON:0001890,8.16e-13,41;UBERON:0003080,8.16e-13,41;UBERON:0006240,8.16e-13,41;UBERON:0000073,2.52e-11,53;UBERON:0002616,2.52e-11,53;UBERON:0011216,5.22e-10,223;UBERON:0001893,9.88e-10,34;UBERON:0003528,3.30e-09,34;UBERON:0002020,3.30e-09,34;UBERON:0000955,6.95e-09,68;UBERON:0006238,6.95e-09,68;UBERON:0000489,8.78e-09,31;UBERON:0002791,9.83e-09,32;UBERON:0001869,1.65e-08,32;UBERON:0001017,1.69e-08,81;UBERON:0003075,2.89e-08,82;UBERON:0007284,2.89e-08,82;UBERON:0003056,3.50e-08,61;UBERON:0002346,1.06e-07,86;UBERON:0002113,1.49e-07,26;UBERON:0003918,1.49e-07,26;UBERON:0011143,1.49e-07,26;UBERON:0005095,1.49e-07,26;UBERON:0007687,1.49e-07,26;UBERON:0001950,2.22e-07,20;UBERON:0002619,2.30e-07,22;UBERON:0001016,2.96e-07,89 | |||
|phase1_expression=0,0,0.422863212287913,0,0,0,0,0,0,0.245733936501509,4.88460817580699,0.218441372130172,0.263766978228454,0,0,0,0,0,0,0.123121058076788,0.204000691244253,0,0,0,0.376627918784408,3.59143007015371,5.09023654589664,3.54198515911557,1.18009283054671,1.53531759238885,1.39334510984468,0,0.30120591877825,0,0,0,0,4.43196326825502,2.4065333696417,1.30206522429511,0.671746422719773,0.971680998056939,0.257575567634187,0.436194716338694,0,0.242584061187816,0.697287110717054,0,0.929119112685311,0,0.768482119587302,0.709446689665756,0.344745680736619,1.29096936716765,0,0.941211697713023,1.36453075028923,0.224723484445085,0.612167784741805,0.320929027076094,0.639337125799041,0.329851300186716,1.19678194572979,0.426224750532694,0.870627715885752,0.56738522469114,0,0.251248665256743,1.0429658368404,1.08594422352558,0,0.368277635987565,0,0.633765858935825,2.12604299965044,1.46761051855863,1.23561494261145,0.450530678524519,0.48217676009124,1.71007646244749,0.99458338599545,0.91332076882317,3.51992488922645,1.63841583378639,4.44754626931777,7.68114400619713,3.2031678962881,1.72425731986345,5.94940385506376,1.90810750907073,0,2.93618594685469,1.52909291250092,0,0,0.790152254325231,0.196709770113833,0.786021525498329,0.411202997999018,0.167186495390678,0.32592226663359,0,0,0.111410456885174,0.883817722424512,0.443067789167242,0,0.25618263945135,0.390178042679635,0,0,0,0,0,1.04535523804977,0.226618685395132,0.383220493601921,0.68725489096526,0.506039384039006,0.318565414324097,0,0,0.451725357233318,0.511946444617674,0,0.473554504088034,0.821127996921047,0.201606743224732,1.60464117470104,0.724122019413995,0,0,0,0,0,0,0,0,0,0,0.087834785693126,2.48860243445654,1.09288586487763,0.370784442784429,0.649094787309367,0.348259474598534,1.99436940778298,0.238490624305342,0,0,0,0,0.347140501607594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.323745888736263,0,0,0,0.103325781175765,0,0.989067717114227,0,0,0,0.125118519871964,0.554128230968366,1.31693286264251,2.45190236639216,4.05642759047811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286804595389004,0.487894824518382,0.397589304964456,0.348581828608555,0.518305275076852,0,1.09493207722749,0,0,0,0,0,3.19428360107579,3.37169380156203,1.92808823906786,2.53676137284506,2.17879444092406,2.60997681022206,3.10112008768378,2.35465758150415,1.92373578473195,0,1.40241773803446,0,0,3.80265104465493,2.94848165003288,0.590789906681404,0,4.42758378755209,0,0,0,0.201057944823262,0.370353780634118,0,0,0,0.579652024875384,0,0,0,0,1.58040879591855,3.43394464837949,1.96973604869918,1.17002132569619,0.743155811443641,0,0,0.141775097242386,0,0,0,0,0.264145302039678,4.97587477297853,1.15295962733569,3.7872730027914,0,0.381988425558278,0,0,0,0.600686115687835,0,0.112131084345361,0,0,0,0,0,0,0,0.771622122786426,0,0,0,0,0,0.325736184293735,0,0,0,0,0,1.2162378064119,0,2.10833939483032,0,0,0,0,0,0,0,1.77327684181734,1.50939302401662,2.31017465303547,1.27047312111232,0,0,0.502548796003046,0.637938751653163,0,0,0.414415513436035,0.12269149171914,0.500170521059677,0,0,0,0.157702415033935,0,0,0,0,0,0.368738337083406,0,0,0.343143423810856,1.24060815673732,1.72571360654893,0.533637789017222,0,0,0,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0,5.92211302998949,0,0.368323955743585,0,0,0,2.70719767744447,4.1588282036384,3.13739907670742,4.38417673959782,5.91089121800104,0,0,0.215915916102139,3.08454505380579,1.08378575017541,2.00675909541941,2.80363900349542,4.15538004464362,1.34324852833307,0.438519753291869,0.784306353074702,3.07740150139667,0.984043937099117,0.325378394664303,1.13345112812495,4.30376484646214,5.85817449436175,0,0,0,0.580024309752732,0,0,1.10269257987624,0,0.145016693914229,0.0852266274161009,0.534192213880424,0,0,0,0.4046311234222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384888450902048,0,0,0.847294206991012,0,0,0.443430153536676,0,1.01489521846434,0,1.70894156152249,1.19115887728894,2.46817363851717,0.648473311192717,0.540031437238115,1.58625035258854,1.81600920916704,1.92495971052672,1.96032172784825,1.48642540100575,0,0,0.318852545457645,1.39705560002972,0,0.635020748171649,0.973865820823666,0,3.65175486453108,0.47003968731907,0,0,0.642352300414798,1.61439765752838,18.7372344583744,3.43505344755765,176.970680241672,137.784482461728,159.841477760008,8.79246429309181,0,0,11.9000498529433,0,1.4098700508785,2.8071081061233,0.73254089635947,2.54857095673978,1.5602073798847,0.852408440419239,0.23874448473769,0,0,2.98244294329889,4.07941307590487,0.111308705022906,6.26254722061686,1.05562704063997,1.59398390600856,1.65770349318689,5.03865495708552,3.57940388757542,0.615424027305347,0,1.07842021376792,0,3.06943422136123,1.479651084554,2.3948309234694,0,2.90799823828566,1.94813006139888,1.99613798001194,1.82299432759663,0,0,1.4793148277115,3.30529745380596,5.67330436243047,10.3423011972439,2.04123229368278,4.5142498682656,1.77148277162768,2.77371808838438,0,0.774054819518572,0.88664285686064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| ||
|short_description=p1@BMP8B | |||
}} | }} |
Latest revision as of 00:21, 18 September 2015
Short description: | p1@BMP8B |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_BMP8B_5end |
Coexpression cluster: | C132_acute_small_Dendritic_Macrophage_CD14_Neutrophils_Monocytederived |
Association with transcript: | 0bp_to_ENST00000372827, ENST00000397360, NM_001720, uc001cdz.1, uc001cea.1_5end |
EntrezGene: | BMP8B |
HGNC: | 1075 |
UniProt: | P34820E7EMY8Q32NE5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 1.26e-23 | 114 |
neural tube | 6.88e-13 | 56 |
neural rod | 6.88e-13 | 56 |
future spinal cord | 6.88e-13 | 56 |
neural keel | 6.88e-13 | 56 |
regional part of forebrain | 8.16e-13 | 41 |
forebrain | 8.16e-13 | 41 |
anterior neural tube | 8.16e-13 | 41 |
future forebrain | 8.16e-13 | 41 |
regional part of nervous system | 2.52e-11 | 53 |
regional part of brain | 2.52e-11 | 53 |
organ system subdivision | 5.22e-10 | 223 |
telencephalon | 9.88e-10 | 34 |
brain grey matter | 3.30e-09 | 34 |
gray matter | 3.30e-09 | 34 |
brain | 6.95e-09 | 68 |
future brain | 6.95e-09 | 68 |
cavitated compound organ | 8.78e-09 | 31 |
regional part of telencephalon | 9.83e-09 | 32 |
cerebral hemisphere | 1.65e-08 | 32 |
central nervous system | 1.69e-08 | 81 |
neural plate | 2.89e-08 | 82 |
presumptive neural plate | 2.89e-08 | 82 |
pre-chordal neural plate | 3.50e-08 | 61 |
neurectoderm | 1.06e-07 | 86 |
kidney | 1.49e-07 | 26 |
kidney mesenchyme | 1.49e-07 | 26 |
upper urinary tract | 1.49e-07 | 26 |
kidney rudiment | 1.49e-07 | 26 |
kidney field | 1.49e-07 | 26 |
neocortex | 2.22e-07 | 20 |
regional part of cerebral cortex | 2.30e-07 | 22 |
nervous system | 2.96e-07 | 89 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.19e-13 | 106 |
cell type cancer | 3.29e-10 | 143 |
cancer | 8.52e-09 | 235 |
disease of cellular proliferation | 4.99e-08 | 239 |