FFCP PHASE1:Hg19::chr3:122233857..122233898,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:122233857..122233898,+ to FFCP PHASE1:Hg19::chr3:122233857..122233898,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr3:122233857..122233898,+ | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_at_chr3:122233857..122233898,+ | |||
|id=chr3:122233857..122233898,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000594;5.25e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000594,6.14e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!1.77e-17!90;UBERON:0003075!2.06e-16!86;UBERON:0007284!2.06e-16!86;UBERON:0005743!2.01e-15!86;UBERON:0000073!3.30e-15!94;UBERON:0001016!3.30e-15!94;UBERON:0001017!6.26e-15!82;UBERON:0001049!8.93e-15!57;UBERON:0005068!8.93e-15!57;UBERON:0006241!8.93e-15!57;UBERON:0007135!8.93e-15!57;UBERON:0000955!3.92e-12!69;UBERON:0006238!3.92e-12!69;UBERON:0002780!7.37e-12!41;UBERON:0001890!7.37e-12!41;UBERON:0006240!7.37e-12!41;UBERON:0002616!1.66e-11!59;UBERON:0003080!2.71e-11!42;UBERON:0003056!5.29e-11!61;UBERON:0002020!1.47e-09!34;UBERON:0003528!1.47e-09!34;UBERON:0000924!2.75e-09!173;UBERON:0006601!2.75e-09!173;UBERON:0001893!4.54e-09!34;UBERON:0002791!8.89e-09!33;UBERON:0004121!1.56e-08!169;UBERON:0001869!4.88e-08!32;UBERON:0000033!1.00e-07!123;UBERON:0000119!3.90e-07!312 | |||
|ontology_enrichment_uberon_v019=UBERON:0000125;1.03e-12;9!UBERON:0002308;1.03e-12;9!UBERON:0002148;4.19e-10;2!UBERON:0006331;4.19e-10;2!UBERON:0009662;4.19e-10;2!UBERON:0003528;1.15e-08;34!UBERON:0002020;1.15e-08;34!UBERON:0002791;1.25e-07;32!UBERON:0002780;1.75e-07;41!UBERON:0001890;1.75e-07;41!UBERON:0005383;2.79e-07;3!UBERON:0005382;2.79e-07;3!UBERON:0001869;3.08e-07;32!UBERON:0000988;5.25e-07;3!UBERON:0001870;5.25e-07;3!UBERON:0002369;5.25e-07;3!UBERON:0001235;5.25e-07;3!UBERON:0006858;5.25e-07;3!UBERON:0001893;6.17e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000125,7.75e-13,9;UBERON:0002308,7.75e-13,9;UBERON:0000073,1.70e-11,53;UBERON:0002616,1.70e-11,53;UBERON:0003528,4.20e-11,34;UBERON:0002020,4.20e-11,34;UBERON:0002780,5.36e-11,41;UBERON:0001890,5.36e-11,41;UBERON:0003080,5.36e-11,41;UBERON:0006240,5.36e-11,41;UBERON:0001049,9.49e-11,56;UBERON:0005068,9.49e-11,56;UBERON:0006241,9.49e-11,56;UBERON:0007135,9.49e-11,56;UBERON:0002148,4.86e-10,2;UBERON:0006331,4.86e-10,2;UBERON:0009662,4.86e-10,2;UBERON:0001016,3.50e-09,89;UBERON:0002346,1.84e-08,86;UBERON:0000955,2.91e-08,68;UBERON:0006238,2.91e-08,68;UBERON:0003056,3.52e-08,61;UBERON:0001017,9.03e-08,81;UBERON:0003075,9.15e-08,82;UBERON:0007284,9.15e-08,82;UBERON:0002791,1.33e-07,32;UBERON:0001869,1.33e-07,32;UBERON:0005383,2.15e-07,3;UBERON:0005382,2.15e-07,3;UBERON:0002369,3.89e-07,3;UBERON:0001235,3.89e-07,3;UBERON:0006858,3.89e-07,3;UBERON:0001893,4.24e-07,34;UBERON:0000988,5.78e-07,3;UBERON:0007023,7.43e-07,114;UBERON:0001870,7.81e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.783556884599516,0,0,0,0.263766978228454,0.74259811776028,0.994192127183747,0,0,0,0,0.123121058076788,0.408001382488506,0,0,0,0.125542639594803,0,0,0.0787107813136792,0,0,0,0,0.30120591877825,0,0.0774672005803016,0.284338464974843,0.587200878669695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.661044872784862,0,0,0,0,1.32171328579026,0,0,0.196709770113833,0,0,0,0,0,0,0.111410456885174,0,0.221533894583621,0,0,0,0,0,0,0.14828656316206,0.267540828089713,0,0,0,0,0,0.637130828648193,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0.50133791063589,0.144846518960824,0,0.486634870302636,0.189069634328136,0.221729397462564,0.175669571386252,10.019899275575,0,0.370784442784429,0,0,0,0,0,0,0,0,0.347140501607594,0,0,0,0.208994966536811,0,0,0,0,0,0.24406205754817,0,0,0.17859945656816,0.22452937262617,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0.354668382198357,0,1.06748995729705,0,0,0.134710672069688,0,0.302714855289863,0,0,0,0,0.149448680551801,0.117434498643765,0.485618833104395,0.140450806702248,0,0.245668634623536,0.516628905878827,0,0,0,0,0.168336113954066,0,0,0,0,0,0.113432183160021,0.179389635688862,0,0.423863802319124,0,0.103052529238439,0,0,0.168776332241266,0,0,0,0.161646056818812,0,0,0,0,0.272746120590835,0,0,0.132529768321485,0.116193942869518,0.518305275076852,0,0.72995471815166,0,0,0,0.464367928031979,0.721879481669586,0.118306800039844,0,0,0.220587945464788,0,0,0.134831308160164,0.196221465125346,0.38474715694639,0,0,0,1.47008711385542,0,0,0,0.441463099414651,0.122988438543114,0.343135620597051,0,0,0.100528972411631,0.0925884451585296,0.325808305310325,0,0,0.579652024875384,0,0.288732895522148,0.462985512576611,0,0,0,0,0,0.148631162288728,0,0.335964256397719,0.283550194484773,0.0895585227028483,0,0,0,0.264145302039678,0.207328115540772,0,0,0.126995788584338,0,1.17217447210047,0,0.102827492703324,0,0,0.112131084345361,1.30788020649984,0.22001485746285,0,0,0,0,0,0.514414748524284,0,0.266422179016099,0.714889968290738,1.62786481617433,0.823240336780769,0,0.355391948742546,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0.205476322550383,0.179060963239896,0,0,0.215627574859517,0,0,0,0.773288812777695,0.167516265334349,0,0,0,0,0.49076596687656,1.00034104211935,0.813795071099207,0.415941723061614,0,0.157702415033935,0.234282829985426,0,0,1.03473071292505,0,0.184369168541703,0.0868836144680828,0.783204629850962,2.74514739048685,0,0,0,0,0,0.30239029332968,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0.116210378459959,0,0.40101294060657,0,0,0,0,0.451199612907412,0.770153371044148,0,0,0,0,0.340187410553031,0.215915916102139,0,0,0.501689773854853,0,0,0.671624264166535,0,0,0,0.328014645699706,0.325378394664303,0.103041011647722,0.0915694648183434,0,0,0,0,0,0.154048617114644,0,0.137836572484531,1.6113036730241,1.0151168573996,0.255679882248303,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.78494864019923,0.359744915166629,0,0.117812402345686,0,0,0,0.48763373908959,0,0,0.136499911407986,0.141405431953713,0,0,0.66343897524122,0,0,0,0,0,0,0.286822704408103,0.196498082026242,0,0,0.211107635297664,0.329294892959902,0,0,0.0962221127255121,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96032172784825,0,0.432807638929335,0,0.478278818186467,0.199579371432817,0,0.635020748171649,0.324621940274555,0,0,0.156679895773023,0,0,0.1605880751037,0,0.425846237690326,0,0,0,0.166849141711909,0,0,0,1.08182271390393,0,0,0,0,1.33496573924465,0.111443384277478,0,0,0,0,0,0.844016498463076,0.111308705022906,0.16480387422676,0,0.19924798825107,0,0.503865495708552,0.20453736500431,0.492339221844278,0,0.0898683511473268,0.179021174675609,0,0,0,0,0.969332746095218,0.463840490809256,0,0,0,0,0,0.762760950878299,0,2.41320361269025,0.291604613383254,0.520874984799877,2.65722415744152,0.964771509003264,0,0,0.591095237907095,1.53569778007781,2.50558466093677,0,0,0,0.922255617552241,0.269272933229316,1.73835795075213,0.31900115973192,0,0,1.02193298195737,0.156980256395025,0.166211681900156,0,0,0,0,0.317873157960757,0.210998064528027,0.816164040795739,0.282706142867882,0.865554558968364,0,0,0,0,0,0.104421949505455,0.539209063845416,0,1.63985112007737,0,0,0,0,0,0,0.063186579628488,0.450970258243478,0.311064574191741,0,0.330991955875499,0,0,1.13843818411917,0,0,0.293977192243133,0,0,0,0.19351266257817,0.0730893170861856,0.328461828212837,0,0.0882561266915003,0,0.411125773940253,0.397429223405979,1.07628353124994,0.391102765469606,0.400794101257669,0.213452994739353,0.19980960958213,0,0.114536596165916,1.02956998717179,0,0.248505071130865,0,0.135904206073614,0,0,0,0,1.36905378891993,0,0,0.525774708558629,0.279282401272254,0.229160424011684,0,0,0,0,0,0,0,0.0787831823072236,0,0,0,0.254019996197353,0.795229689809303,0.681017030557878,0.482259445395058,0.412618309791701,0.415440338029185,0,0,0.303747783290123,0,0,0,0.105600336519406,0.35857467866569,0.191915197319445,0,0,0,0,0,0,0,0.328370082997356,0,0.113312091520126,0,0,1.16354660725395,1.19009341568421,0,0,0.10678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| ||
|short_description=p@chr3:122233857..122233898,+ | |||
}} | }} |
Latest revision as of 15:02, 29 July 2015
Short description: | p@chr3:122233857..122233898, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:122233857..122233898, + |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skeletal muscle satellite cell | 6.14e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
neural nucleus | 7.75e-13 | 9 |
nucleus of brain | 7.75e-13 | 9 |
regional part of nervous system | 1.70e-11 | 53 |
regional part of brain | 1.70e-11 | 53 |
brain grey matter | 4.20e-11 | 34 |
gray matter | 4.20e-11 | 34 |
regional part of forebrain | 5.36e-11 | 41 |
forebrain | 5.36e-11 | 41 |
anterior neural tube | 5.36e-11 | 41 |
future forebrain | 5.36e-11 | 41 |
neural tube | 9.49e-11 | 56 |
neural rod | 9.49e-11 | 56 |
future spinal cord | 9.49e-11 | 56 |
neural keel | 9.49e-11 | 56 |
locus ceruleus | 4.86e-10 | 2 |
brainstem nucleus | 4.86e-10 | 2 |
hindbrain nucleus | 4.86e-10 | 2 |
nervous system | 3.50e-09 | 89 |
neurectoderm | 1.84e-08 | 86 |
brain | 2.91e-08 | 68 |
future brain | 2.91e-08 | 68 |
pre-chordal neural plate | 3.52e-08 | 61 |
central nervous system | 9.03e-08 | 81 |
neural plate | 9.15e-08 | 82 |
presumptive neural plate | 9.15e-08 | 82 |
regional part of telencephalon | 1.33e-07 | 32 |
cerebral hemisphere | 1.33e-07 | 32 |
caudate-putamen | 2.15e-07 | 3 |
dorsal striatum | 2.15e-07 | 3 |
adrenal gland | 3.89e-07 | 3 |
adrenal cortex | 3.89e-07 | 3 |
adrenal/interrenal gland | 3.89e-07 | 3 |
telencephalon | 4.24e-07 | 34 |
pons | 5.78e-07 | 3 |
adult organism | 7.43e-07 | 114 |
frontal cortex | 7.81e-07 | 3 |