FFCP PHASE1:Hg19::chr3:56835967..56835985,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:56835967..56835985,- to FFCP PHASE1:Hg19::chr3:56835967..56835985,-: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=50650 | |EntrezGene=50650 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=683 | |HGNC=683 | ||
|TSSclassifier=strong | |||
|UniProt=C9J586 | |UniProt=C9J586 | ||
|association_with_transcript=0bp_to_ENST00000465659,ENST00000495373_5end | |||
|cluster_id=chr3:56835967..56835985,- | |||
|description=CAGE_peak_1_at_ARHGEF3_5end | |||
|id=chr3:56835967..56835985,- | |||
|ontology_enrichment_celltype=CL:0002087!5.82e-16!119;CL:0000738!2.26e-13!140;CL:0002031!7.42e-12!124;CL:0000791!4.76e-11!18;CL:0000789!4.76e-11!18;CL:0002420!4.76e-11!18;CL:0002419!4.76e-11!18;CL:0000790!4.76e-11!18;CL:0002057!1.39e-10!42;CL:0000838!1.27e-08!52;CL:0000860!1.53e-08!45;CL:0000542!5.44e-08!53;CL:0000051!5.44e-08!53;CL:0000625!8.41e-08!11;CL:0002194!1.42e-07!63;CL:0000576!1.42e-07!63;CL:0000040!1.42e-07!63;CL:0000559!1.42e-07!63;CL:0000037!4.49e-07!172;CL:0000566!4.49e-07!172;CL:0002009!5.50e-07!65 | |||
|ontology_enrichment_celltype_v019=CL:0000791;4.30e-11;18!CL:0000789;4.30e-11;18!CL:0002419;4.30e-11;18!CL:0000625;7.89e-08;11!CL:0000860;1.32e-07;33!CL:0002057;1.32e-07;33!CL:0000473;2.85e-07;39!CL:0000234;2.85e-07;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0002087,1.46e-17,115;CL:0000738,1.21e-14,136;CL:0002031,4.03e-13,120;CL:0000473,3.09e-11,48;CL:0000234,3.09e-11,48;CL:0000791,4.51e-11,18;CL:0000789,4.51e-11,18;CL:0002420,4.51e-11,18;CL:0002419,4.51e-11,18;CL:0000790,4.51e-11,18;CL:0000860,1.33e-10,42;CL:0002057,1.33e-10,42;CL:0002194,5.46e-09,59;CL:0000576,5.46e-09,59;CL:0000040,5.46e-09,59;CL:0000559,5.46e-09,59;CL:0000838,1.17e-08,52;CL:0002009,2.74e-08,61;CL:0000037,4.06e-08,168;CL:0000542,5.12e-08,53;CL:0000051,5.12e-08,53;CL:0000625,8.13e-08,11;CL:0000766,2.28e-07,72;CL:0002032,4.33e-07,161;CL:0000837,4.33e-07,161 | |||
|ontology_enrichment_development_v019=CL:0000790;4.30e-11;18!CL:0002057;5.49e-08;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.41e-29!115;UBERON:0001049!3.36e-15!57;UBERON:0005068!3.36e-15!57;UBERON:0006241!3.36e-15!57;UBERON:0007135!3.36e-15!57;UBERON:0003075!4.41e-15!86;UBERON:0007284!4.41e-15!86;UBERON:0002780!1.00e-14!41;UBERON:0001890!1.00e-14!41;UBERON:0006240!1.00e-14!41;UBERON:0003080!1.21e-14!42;UBERON:0002346!3.97e-14!90;UBERON:0003056!8.42e-14!61;UBERON:0002616!1.87e-13!59;UBERON:0005743!5.26e-13!86;UBERON:0001869!3.92e-12!32;UBERON:0001893!3.97e-12!34;UBERON:0002619!1.25e-11!22;UBERON:0001017!1.25e-11!82;UBERON:0000955!1.33e-11!69;UBERON:0006238!1.33e-11!69;UBERON:0002791!1.44e-11!33;UBERON:0000073!1.82e-11!94;UBERON:0001016!1.82e-11!94;UBERON:0002020!2.16e-11!34;UBERON:0003528!2.16e-11!34;UBERON:0000153!2.88e-11!129;UBERON:0007811!2.88e-11!129;UBERON:0001950!7.30e-11!20;UBERON:0000956!5.22e-10!25;UBERON:0000203!5.22e-10!25;UBERON:0000033!9.65e-10!123;UBERON:0002390!1.10e-07!102;UBERON:0003061!1.10e-07!102;UBERON:0004121!1.40e-07!169;UBERON:0002193!1.92e-07!112;UBERON:0000924!2.98e-07!173;UBERON:0006601!2.98e-07!173 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;1.11e-11;22!UBERON:0001869;5.79e-11;32!UBERON:0001950;6.67e-11;20!UBERON:0002780;9.35e-11;41!UBERON:0001890;9.35e-11;41!UBERON:0001893;1.40e-10;34!UBERON:0002791;2.45e-10;32!UBERON:0003528;5.18e-10;34!UBERON:0002020;5.18e-10;34!UBERON:0000956;5.40e-10;25!UBERON:0000203;5.40e-10;25!UBERON:0000073;6.29e-09;53!UBERON:0002616;6.29e-09;53!UBERON:0007023;2.54e-08;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,9.98e-29,114;UBERON:0001049,2.88e-15,56;UBERON:0005068,2.88e-15,56;UBERON:0006241,2.88e-15,56;UBERON:0007135,2.88e-15,56;UBERON:0000073,5.42e-15,53;UBERON:0002616,5.42e-15,53;UBERON:0003075,9.13e-15,82;UBERON:0007284,9.13e-15,82;UBERON:0002780,9.32e-15,41;UBERON:0001890,9.32e-15,41;UBERON:0003080,9.32e-15,41;UBERON:0006240,9.32e-15,41;UBERON:0003056,3.25e-14,61;UBERON:0002346,8.57e-14,86;UBERON:0010371,1.64e-13,104;UBERON:0001869,3.70e-12,32;UBERON:0001893,3.74e-12,34;UBERON:0002619,1.18e-11,22;UBERON:0000955,1.34e-11,68;UBERON:0006238,1.34e-11,68;UBERON:0001017,1.46e-11,81;UBERON:0002791,2.03e-11,32;UBERON:0003528,2.05e-11,34;UBERON:0002020,2.05e-11,34;UBERON:0001950,6.93e-11,20;UBERON:0001016,3.58e-10,89;UBERON:0000956,4.98e-10,25;UBERON:0000203,4.98e-10,25;UBERON:0010314,6.85e-09,132;UBERON:0002390,9.75e-09,98;UBERON:0003061,9.75e-09,98;UBERON:0002193,2.04e-08,108;UBERON:0003081,7.12e-08,203;UBERON:0004121,7.78e-07,171;UBERON:0000924,7.78e-07,171;UBERON:0006601,7.78e-07,171;UBERON:0000025,9.00e-07,192 | |||
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| ||
|short_description=p1@ARHGEF3 | |||
}} | }} |
Latest revision as of 03:49, 19 September 2015
Short description: | p1@ARHGEF3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ARHGEF3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000465659, ENST00000495373_5end |
EntrezGene: | ARHGEF3 |
HGNC: | 683 |
UniProt: | C9J586 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nongranular leukocyte | 1.46e-17 | 115 |
leukocyte | 1.21e-14 | 136 |
hematopoietic lineage restricted progenitor cell | 4.03e-13 | 120 |
defensive cell | 3.09e-11 | 48 |
phagocyte | 3.09e-11 | 48 |
mature alpha-beta T cell | 4.51e-11 | 18 |
alpha-beta T cell | 4.51e-11 | 18 |
immature T cell | 4.51e-11 | 18 |
mature T cell | 4.51e-11 | 18 |
immature alpha-beta T cell | 4.51e-11 | 18 |
classical monocyte | 1.33e-10 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.33e-10 | 42 |
monopoietic cell | 5.46e-09 | 59 |
monocyte | 5.46e-09 | 59 |
monoblast | 5.46e-09 | 59 |
promonocyte | 5.46e-09 | 59 |
lymphoid lineage restricted progenitor cell | 1.17e-08 | 52 |
macrophage dendritic cell progenitor | 2.74e-08 | 61 |
hematopoietic stem cell | 4.06e-08 | 168 |
lymphocyte | 5.12e-08 | 53 |
common lymphoid progenitor | 5.12e-08 | 53 |
CD8-positive, alpha-beta T cell | 8.13e-08 | 11 |
myeloid leukocyte | 2.28e-07 | 72 |
hematopoietic oligopotent progenitor cell | 4.33e-07 | 161 |
hematopoietic multipotent progenitor cell | 4.33e-07 | 161 |