FFCP PHASE1:Hg19::chr5:55422645..55422665,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:55422645..55422665,- to FFCP PHASE1:Hg19::chr5:55422645..55422665,-: NSchange) |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr5:55422645..55422665,- | |||
|description=CAGE_peak_at_chr5:55422645..55422665,- | |||
|id=chr5:55422645..55422665,- | |||
|ontology_enrichment_celltype=CL:0000115!8.47e-40!35;CL:0002139!1.50e-39!24;CL:0002078!2.16e-30!44;CL:0000071!6.15e-28!18;CL:0002546!6.15e-28!18;CL:0000213!3.23e-24!57;CL:0000215!3.23e-24!57;CL:1000413!5.07e-17!9;CL:0002543!7.96e-14!6;CL:0005020!2.93e-13!6;CL:0002138!2.93e-13!6;CL:0005022!2.93e-13!6;CL:0000222!1.64e-11!119;CL:0002618!3.92e-11!3;CL:0002544!5.58e-09!6;CL:0000666!2.39e-08!4;CL:0002188!2.39e-08!4;CL:1000612!5.45e-08!7;CL:1000746!5.45e-08!7;CL:0000076!5.78e-07!62 | |||
|ontology_enrichment_celltype_v019=CL:0000115;3.81e-47;36!CL:0002139;1.75e-40;24!CL:0000071;7.05e-31;18!CL:0002078;1.02e-27;45!CL:0002188;1.60e-23;5!CL:0002618;7.53e-23;3!CL:0002543;1.02e-19;6!CL:1000413;1.34e-19;9!CL:0000213;2.29e-19;58!CL:0000215;2.29e-19;58!CL:1000746;7.16e-17;7!CL:1000612;7.16e-17;7!CL:0002544;2.39e-11;6!CL:0002138;4.27e-11;6!CL:0002681;6.55e-10;12!CL:0002584;6.55e-10;12!CL:1000449;5.97e-08;15!CL:1000497;5.03e-07;17!CL:0002518;5.03e-07;17!CL:0000076;7.63e-07;63 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,3.54e-54,36;CL:0002078,1.04e-42,45;CL:0002139,1.37e-40,24;CL:0000213,2.02e-32,58;CL:0000215,2.02e-32,58;CL:0000071,6.71e-31,18;CL:0002546,6.71e-31,18;CL:0002188,1.70e-23,5;CL:0002618,7.56e-23,3;CL:0002543,7.12e-20,6;CL:1000413,1.70e-19,9;CL:1000746,7.48e-17,7;CL:1000612,7.48e-17,7;CL:0000222,7.59e-14,121;CL:0002544,3.17e-11,6;CL:0005020,3.53e-11,6;CL:0002138,3.53e-11,6;CL:0005022,3.53e-11,6;CL:0002681,6.71e-10,12;CL:0002584,6.71e-10,12;CL:1000449,6.09e-08,15;CL:0000076,7.54e-08,63;CL:1000497,5.11e-07,17;CL:0002518,5.11e-07,17 | |||
|ontology_enrichment_development_v019=CL:0002546;7.05e-31;18!CL:0005022;4.27e-11;6!CL:0000222;5.90e-07;121 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004535!1.53e-28!110;UBERON:0001986!6.15e-28!18;UBERON:0004638!6.15e-28!18;UBERON:0004852!6.15e-28!18;UBERON:0001009!1.57e-27!113;UBERON:0000487!2.91e-22!22;UBERON:0000178!4.25e-20!15;UBERON:0000179!4.25e-20!15;UBERON:0000463!4.25e-20!15;UBERON:0006914!3.35e-19!25;UBERON:0003915!5.07e-17!9;UBERON:0004700!5.07e-17!9;UBERON:0001917!5.07e-17!9;UBERON:0000055!8.67e-17!69;UBERON:0002049!6.12e-14!79;UBERON:0007798!6.12e-14!79;UBERON:0004872!1.85e-12!84;UBERON:0003081!1.24e-11!216;UBERON:0001981!2.89e-11!60;UBERON:0007500!2.89e-11!60;UBERON:0004537!2.89e-11!60;UBERON:0006965!2.89e-11!60;UBERON:0003914!1.83e-10!118;UBERON:0001473!7.47e-10!8;UBERON:0004536!7.47e-10!8;UBERON:0006558!7.47e-10!8;UBERON:0001638!4.43e-09!9;UBERON:0003920!4.43e-09!9;UBERON:0004582!4.43e-09!9;UBERON:0004111!1.58e-08!241;UBERON:0000074!5.45e-08!7;UBERON:0001229!5.45e-08!7;UBERON:0001230!5.45e-08!7;UBERON:0005749!5.45e-08!7;UBERON:0004199!5.45e-08!7;UBERON:0004209!5.45e-08!7;UBERON:0004198!5.45e-08!7;UBERON:0002465!8.34e-08!10;UBERON:0000477!1.56e-07!286;UBERON:0002066!8.35e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;7.05e-31;18!UBERON:0001986;7.05e-31;18!UBERON:0004852;7.05e-31;18!UBERON:0000487;5.05e-25;22!UBERON:0000178;5.39e-23;15!UBERON:0000179;5.39e-23;15!UBERON:0000463;5.39e-23;15!UBERON:0006914;7.37e-22;25!UBERON:0003915;1.34e-19;9!UBERON:0004700;1.34e-19;9!UBERON:0001917;1.34e-19;9!UBERON:0000074;7.16e-17;7!UBERON:0001229;7.16e-17;7!UBERON:0000490;2.10e-14;33!UBERON:0002066;6.07e-14;5!UBERON:0001638;3.26e-13;9!UBERON:0003920;3.26e-13;9!UBERON:0004582;3.26e-13;9!UBERON:0002193;1.12e-12;42!UBERON:0000353;5.31e-12;15!UBERON:0000055;3.45e-11;65!UBERON:0002390;5.64e-10;32!UBERON:0001225;6.55e-10;12!UBERON:0008987;6.55e-10;12!UBERON:0001473;1.90e-08;8!UBERON:0004536;1.90e-08;8!UBERON:0006558;1.90e-08;8!UBERON:0010260;5.86e-08;9!UBERON:0001851;5.97e-08;15!UBERON:0006555;5.97e-08;15!UBERON:0004819;5.97e-08;15!UBERON:0001285;5.97e-08;15!UBERON:0007684;5.97e-08;15!UBERON:0002049;6.55e-08;75!UBERON:0007798;6.55e-08;75!UBERON:0003914;6.30e-07;74!UBERON:0004535;7.35e-07;109!UBERON:0002465;7.55e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,6.71e-31,18;UBERON:0001986,6.71e-31,18;UBERON:0004852,6.71e-31,18;UBERON:0000487,4.85e-25,22;UBERON:0000178,5.87e-23,15;UBERON:0000179,5.87e-23,15;UBERON:0000463,5.87e-23,15;UBERON:0004535,1.35e-22,109;UBERON:0001009,6.84e-22,112;UBERON:0006914,7.12e-22,25;UBERON:0003915,1.70e-19,9;UBERON:0004700,1.70e-19,9;UBERON:0001917,1.70e-19,9;UBERON:0010532,7.48e-17,7;UBERON:0000074,7.48e-17,7;UBERON:0001229,7.48e-17,7;UBERON:0001230,7.48e-17,7;UBERON:0003220,7.48e-17,7;UBERON:0005749,7.48e-17,7;UBERON:0004199,7.48e-17,7;UBERON:0004209,7.48e-17,7;UBERON:0004198,7.48e-17,7;UBERON:0000055,2.48e-15,68;UBERON:0005103,9.02e-15,8;UBERON:0000083,9.02e-15,8;UBERON:0009201,9.02e-15,8;UBERON:0006553,9.02e-15,8;UBERON:0003074,9.02e-15,8;UBERON:0003060,9.02e-15,8;UBERON:0002066,6.09e-14,5;UBERON:0001638,2.58e-13,9;UBERON:0003920,2.58e-13,9;UBERON:0004582,2.58e-13,9;UBERON:0000080,3.77e-13,9;UBERON:0002120,3.77e-13,9;UBERON:0004875,3.77e-13,9;UBERON:0005721,3.77e-13,9;UBERON:0005754,3.77e-13,9;UBERON:0007297,3.77e-13,9;UBERON:0002049,4.65e-13,78;UBERON:0007798,4.65e-13,78;UBERON:0000353,5.64e-12,15;UBERON:0003081,1.11e-11,203;UBERON:0004876,8.68e-11,11;UBERON:0007500,1.63e-10,59;UBERON:0001981,1.63e-10,59;UBERON:0004537,1.63e-10,59;UBERON:0006965,1.63e-10,59;UBERON:0001225,6.71e-10,12;UBERON:0008987,6.71e-10,12;UBERON:0003887,6.71e-10,12;UBERON:0000058,2.06e-09,19;UBERON:0003914,2.10e-09,117;UBERON:0001473,1.65e-08,8;UBERON:0004536,1.65e-08,8;UBERON:0006558,1.65e-08,8;UBERON:0010260,5.86e-08,9;UBERON:0001851,6.09e-08,15;UBERON:0004211,6.09e-08,15;UBERON:0009773,6.09e-08,15;UBERON:0001231,6.09e-08,15;UBERON:0001285,6.09e-08,15;UBERON:0007684,6.09e-08,15;UBERON:0004208,6.09e-08,15;UBERON:0006555,1.88e-07,16;UBERON:0004819,1.88e-07,16;UBERON:0004872,5.32e-07,83;UBERON:0000926,5.79e-07,315;UBERON:0004120,5.79e-07,315;UBERON:0006603,5.79e-07,315;UBERON:0002465,6.75e-07,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09227722252426,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0,0,0,0,0,0,0,0,0,0.294605907474837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0.670700859703636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.30117297553062,1.04142150482278,0.56530794192401,1.25849830862972,1.6507082516404,0.626984899610432,0.258416759169329,1.06729878806013,0,0,0,0.488124115096339,1.47065232138347,0,4.46498641420399,2.91888184414021,3.49095589498299,0,1.89853131913626,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0.269421344139376,0.163461903113459,0,0,0,0,1.71141546463335,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340296549480063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.21446636387394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.73239737313289,0.462985512576611,1.71228737011138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24324654030811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114814448164607,0,0,0,0,0,0,0,1.13733384070897,1.70093705276516,4.53423423814493,6.16909010761157,0,0,0,0,0,0,0.261435451024901,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.56702848308952,2.29391162142713,0.569647187174163,1.19115887728894,1.23408681925858,4.53931317834902,3.7802200606668,2.37937552888281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398095888698616,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252071696221718,0,0,0,0,0,0,0,0,0.690359926060101,0,0,0,0,0,0,0,0,0,0,0,0.546974809018219,0,0,0,0,0,0,0,0.455324382702595,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23806443146374,0,0.0620747142958579,0,0.0636471582781649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09227722252426,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0,0,0,0,0,0,0,0,0,0.294605907474837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0.670700859703636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.30117297553062,1.04142150482278,0.56530794192401,1.25849830862972,1.6507082516404,0.626984899610432,0.258416759169329,1.06729878806013,0,0,0,0.488124115096339,1.47065232138347,0,4.46498641420399,2.91888184414021,3.49095589498299,0,1.89853131913626,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0.269421344139376,0.163461903113459,0,0,0,0,1.71141546463335,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340296549480063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.21446636387394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.73239737313289,0.462985512576611,1.71228737011138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24324654030811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114814448164607,0,0,0,0,0,0,0,1.13733384070897,1.70093705276516,4.53423423814493,6.16909010761157,0,0,0,0,0,0,0.261435451024901,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.56702848308952,2.29391162142713,0.569647187174163,1.19115887728894,1.23408681925858,4.53931317834902,3.7802200606668,2.37937552888281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398095888698616,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252071696221718,0,0,0,0,0,0,0,0,0.690359926060101,0,0,0,0,0,0,0,0,0,0,0,0.546974809018219,0,0,0,0,0,0,0,0.455324382702595,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23806443146374,0,0.0620747142958579,0,0.0636471582781649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr5:55422645..55422665,- | |||
}} | }} |
Latest revision as of 15:21, 30 July 2015
Short description: | p@chr5:55422645..55422665, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:55422645..55422665, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 3.54e-54 | 36 |
meso-epithelial cell | 1.04e-42 | 45 |
endothelial cell of vascular tree | 1.37e-40 | 24 |
lining cell | 2.02e-32 | 58 |
barrier cell | 2.02e-32 | 58 |
blood vessel endothelial cell | 6.71e-31 | 18 |
embryonic blood vessel endothelial progenitor cell | 6.71e-31 | 18 |
glomerular endothelial cell | 1.70e-23 | 5 |
endothelial cell of umbilical vein | 7.56e-23 | 3 |
vein endothelial cell | 7.12e-20 | 6 |
endothelial cell of artery | 1.70e-19 | 9 |
glomerular cell | 7.48e-17 | 7 |
kidney corpuscule cell | 7.48e-17 | 7 |
mesodermal cell | 7.59e-14 | 121 |
aortic endothelial cell | 3.17e-11 | 6 |
lymphangioblast | 3.53e-11 | 6 |
endothelial cell of lymphatic vessel | 3.53e-11 | 6 |
vascular lymphangioblast | 3.53e-11 | 6 |
kidney cortical cell | 6.71e-10 | 12 |
renal cortical epithelial cell | 6.71e-10 | 12 |
epithelial cell of nephron | 6.09e-08 | 15 |
squamous epithelial cell | 7.54e-08 | 63 |
kidney cell | 5.11e-07 | 17 |
kidney epithelial cell | 5.11e-07 | 17 |