FFCP PHASE1:Hg19::chr7:108166505..108166613,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr7:108166505..108166613,- to FFCP PHASE1:Hg19::chr7:108166505..108166613,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=50640 | |EntrezGene=50640 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28900 | |HGNC=28900 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NP80,C9JN30,C9JAX4 | |UniProt=Q9NP80,C9JN30,C9JAX4 | ||
|association_with_transcript=0bp_to_ENST00000388728,ENST00000426128,ENST00000427008,ENST00000476592,ENST00000483879_5end | |||
|cluster_id=chr7:108166505..108166613,- | |||
|coexpression_cluster_id=C26 | |||
|description=CAGE_peak_1_at_PNPLA8_5end | |||
|id=chr7:108166505..108166613,- | |||
|ontology_enrichment_celltype=CL:0000738!1.16e-35!140;CL:0002031!3.83e-29!124;CL:0002057!1.60e-26!42;CL:0002087!1.89e-26!119;CL:0000766!6.15e-25!76;CL:0000860!1.10e-23!45;CL:0000557!2.00e-21!71;CL:0000037!2.41e-21!172;CL:0000566!2.41e-21!172;CL:0000839!3.11e-21!70;CL:0002032!1.18e-19!165;CL:0000837!1.18e-19!165;CL:0000988!5.89e-19!182;CL:0002009!6.05e-19!65;CL:0002194!7.17e-18!63;CL:0000576!7.17e-18!63;CL:0000040!7.17e-18!63;CL:0000559!7.17e-18!63;CL:0000763!7.58e-12!112;CL:0000049!7.58e-12!112;CL:0000134!5.36e-10!358;CL:0002320!2.11e-09!365;CL:0000542!5.37e-08!53;CL:0000051!5.37e-08!53;CL:0000838!9.14e-08!52;CL:0000219!9.64e-07!390 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.02e-20;33!CL:0002057;5.02e-20;33!CL:0000473;1.79e-15;39!CL:0000234;1.79e-15;39!CL:0000576;5.71e-15;48!CL:0000766;7.15e-13;69!CL:0002087;9.54e-10;104!CL:0000738;2.38e-08;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,9.68e-38,136;CL:0002031,4.12e-31,120;CL:0002087,2.43e-28,115;CL:0000766,1.69e-27,72;CL:0000860,1.60e-26,42;CL:0002057,1.60e-26,42;CL:0000473,9.72e-25,48;CL:0000234,9.72e-25,48;CL:0000557,7.89e-24,67;CL:0000839,1.20e-23,66;CL:0000037,1.37e-22,168;CL:0002009,2.75e-21,61;CL:0002032,7.24e-21,161;CL:0000837,7.24e-21,161;CL:0000988,1.06e-20,177;CL:0002194,3.64e-20,59;CL:0000576,3.64e-20,59;CL:0000040,3.64e-20,59;CL:0000559,3.64e-20,59;CL:0000763,5.98e-13,108;CL:0000049,5.98e-13,108;CL:0000134,1.06e-10,354;CL:0002320,4.47e-10,361;CL:0000542,5.37e-08,53;CL:0000051,5.37e-08,53;CL:0000838,9.14e-08,52;CL:0000219,2.79e-07,386;CL:0000048,5.38e-07,427 | |||
|ontology_enrichment_development_v019=CL:0002057;2.74e-19;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.48e-22!102;UBERON:0003061!1.48e-22!102;UBERON:0002193!4.47e-20!112;UBERON:0002371!1.90e-18!80;UBERON:0001474!6.81e-17!86;UBERON:0004765!1.76e-15!101;UBERON:0001434!1.76e-15!101;UBERON:0007023!5.27e-13!115;UBERON:0002405!8.07e-13!115;UBERON:0002384!2.30e-08!375;UBERON:0002780!3.16e-08!41;UBERON:0001890!3.16e-08!41;UBERON:0006240!3.16e-08!41;UBERON:0001049!3.31e-08!57;UBERON:0005068!3.31e-08!57;UBERON:0006241!3.31e-08!57;UBERON:0007135!3.31e-08!57;UBERON:0003080!3.74e-08!42;UBERON:0002616!3.93e-07!59 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.92e-24,98;UBERON:0003061,1.92e-24,98;UBERON:0002193,1.08e-21,108;UBERON:0002371,2.11e-20,76;UBERON:0004765,1.14e-18,90;UBERON:0001474,1.26e-18,82;UBERON:0002405,5.46e-18,93;UBERON:0001434,1.56e-16,100;UBERON:0007023,1.09e-12,114;UBERON:0002384,5.47e-09,371;UBERON:0001049,3.00e-08,56;UBERON:0005068,3.00e-08,56;UBERON:0006241,3.00e-08,56;UBERON:0007135,3.00e-08,56;UBERON:0002780,3.16e-08,41;UBERON:0001890,3.16e-08,41;UBERON:0003080,3.16e-08,41;UBERON:0006240,3.16e-08,41;UBERON:0000073,9.25e-08,53;UBERON:0002616,9.25e-08,53 | |||
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| ||
|short_description=p1@PNPLA8 | |||
}} | }} |
Latest revision as of 03:03, 25 September 2015
Short description: | p1@PNPLA8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PNPLA8_5end |
Coexpression cluster: | C26_Eosinophils_Neutrophils_CD14_CD14CD16_Basophils_Monocytederived_Whole |
Association with transcript: | 0bp_to_ENST00000388728, ENST00000426128, ENST00000427008, ENST00000476592, ENST00000483879_5end |
EntrezGene: | PNPLA8 |
HGNC: | 28900 |
UniProt: | Q9NP80C9JN30C9JAX4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 9.68e-38 | 136 |
hematopoietic lineage restricted progenitor cell | 4.12e-31 | 120 |
nongranular leukocyte | 2.43e-28 | 115 |
myeloid leukocyte | 1.69e-27 | 72 |
classical monocyte | 1.60e-26 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.60e-26 | 42 |
defensive cell | 9.72e-25 | 48 |
phagocyte | 9.72e-25 | 48 |
granulocyte monocyte progenitor cell | 7.89e-24 | 67 |
myeloid lineage restricted progenitor cell | 1.20e-23 | 66 |
hematopoietic stem cell | 1.37e-22 | 168 |
macrophage dendritic cell progenitor | 2.75e-21 | 61 |
hematopoietic oligopotent progenitor cell | 7.24e-21 | 161 |
hematopoietic multipotent progenitor cell | 7.24e-21 | 161 |
hematopoietic cell | 1.06e-20 | 177 |
monopoietic cell | 3.64e-20 | 59 |
monocyte | 3.64e-20 | 59 |
monoblast | 3.64e-20 | 59 |
promonocyte | 3.64e-20 | 59 |
myeloid cell | 5.98e-13 | 108 |
common myeloid progenitor | 5.98e-13 | 108 |
mesenchymal cell | 1.06e-10 | 354 |
connective tissue cell | 4.47e-10 | 361 |
lymphocyte | 5.37e-08 | 53 |
common lymphoid progenitor | 5.37e-08 | 53 |
lymphoid lineage restricted progenitor cell | 9.14e-08 | 52 |
motile cell | 2.79e-07 | 386 |
multi fate stem cell | 5.38e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.92e-24 | 98 |
blood island | 1.92e-24 | 98 |
hemolymphoid system | 1.08e-21 | 108 |
bone marrow | 2.11e-20 | 76 |
skeletal element | 1.14e-18 | 90 |
bone element | 1.26e-18 | 82 |
immune system | 5.46e-18 | 93 |
skeletal system | 1.56e-16 | 100 |
adult organism | 1.09e-12 | 114 |
connective tissue | 5.47e-09 | 371 |
neural tube | 3.00e-08 | 56 |
neural rod | 3.00e-08 | 56 |
future spinal cord | 3.00e-08 | 56 |
neural keel | 3.00e-08 | 56 |
regional part of forebrain | 3.16e-08 | 41 |
forebrain | 3.16e-08 | 41 |
anterior neural tube | 3.16e-08 | 41 |
future forebrain | 3.16e-08 | 41 |
regional part of nervous system | 9.25e-08 | 53 |
regional part of brain | 9.25e-08 | 53 |