FFCP PHASE1:Hg19::chr8:27491381..27491393,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr8:27491381..27491393,+ to FFCP PHASE1:Hg19::chr8:27491381..27491393,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=51435 | |EntrezGene=51435 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19000 | |HGNC=19000 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000337221_5end | |||
|cluster_id=chr8:27491381..27491393,+ | |||
|description=CAGE_peak_2_at_SCARA3_5end | |||
|id=chr8:27491381..27491393,+ | |||
|ontology_enrichment_celltype=CL:0000055!9.19e-13!180;CL:0000057!6.74e-08!75 | |||
|ontology_enrichment_celltype_v019=CL:0000128;1.60e-08;7!CL:0000126;1.60e-08;7!CL:0000127;1.60e-08;7!CL:0000349;2.47e-07;19!CL:0000138;8.08e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000128,1.71e-08,7;CL:0000126,1.71e-08,7;CL:0000127,1.71e-08,7;CL:0002453,1.71e-08,7;CL:0000057,1.02e-07,76;CL:0000349,2.88e-07,19 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003075!1.44e-15!86;UBERON:0007284!1.44e-15!86;UBERON:0002346!3.28e-14!90;UBERON:0004121!4.19e-13!169;UBERON:0000924!2.47e-12!173;UBERON:0006601!2.47e-12!173;UBERON:0000119!5.60e-12!312;UBERON:0000033!6.15e-12!123;UBERON:0000153!1.07e-11!129;UBERON:0007811!1.07e-11!129;UBERON:0001017!1.84e-11!82;UBERON:0000483!2.29e-11!309;UBERON:0005743!2.72e-11!86;UBERON:0000481!4.96e-11!347;UBERON:0000468!8.18e-11!659;UBERON:0000477!1.23e-10!286;UBERON:0001049!3.21e-10!57;UBERON:0005068!3.21e-10!57;UBERON:0006241!3.21e-10!57;UBERON:0007135!3.21e-10!57;UBERON:0000064!6.21e-10!219;UBERON:0000073!1.45e-09!94;UBERON:0001016!1.45e-09!94;UBERON:0000467!1.83e-09!625;UBERON:0000480!2.65e-09!626;UBERON:0003056!3.14e-09!61;UBERON:0000475!1.43e-08!365;UBERON:0000955!1.76e-08!69;UBERON:0006238!1.76e-08!69;UBERON:0000922!1.93e-08!612;UBERON:0002616!2.70e-08!59;UBERON:0002050!6.09e-08!605;UBERON:0005423!6.09e-08!605;UBERON:0000923!8.11e-08!604;UBERON:0005291!8.11e-08!604;UBERON:0006598!8.11e-08!604;UBERON:0002532!8.11e-08!604;UBERON:0003076!6.49e-07!15;UBERON:0003057!6.49e-07!15;UBERON:0002020!8.28e-07!34;UBERON:0003528!8.28e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0004733;1.64e-08;12!UBERON:0002028;1.64e-08;12!UBERON:0004732;1.04e-07;13!UBERON:0001801;2.48e-07;14!UBERON:0000970;7.67e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,6.90e-14,132;UBERON:0003075,3.40e-13,82;UBERON:0007284,3.40e-13,82;UBERON:0002346,3.97e-12,86;UBERON:0003076,9.98e-12,15;UBERON:0003057,9.98e-12,15;UBERON:0001049,1.26e-09,56;UBERON:0005068,1.26e-09,56;UBERON:0006241,1.26e-09,56;UBERON:0007135,1.26e-09,56;UBERON:0010371,4.51e-09,104;UBERON:0004121,9.62e-09,171;UBERON:0000924,9.62e-09,171;UBERON:0006601,9.62e-09,171;UBERON:0001017,1.35e-08,81;UBERON:0004733,3.08e-08,12;UBERON:0002028,3.08e-08,12;UBERON:0007277,3.08e-08,12;UBERON:0001016,1.30e-07,89;UBERON:0000073,1.60e-07,53;UBERON:0002616,1.60e-07,53;UBERON:0004732,1.84e-07,13;UBERON:0001801,3.34e-07,14;UBERON:0005631,8.42e-07,14;UBERON:0000158,8.42e-07,14;UBERON:0003056,9.35e-07,61 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0.631719873426831,0.261185628199839,0.491467873003018,0.697801167972428,1.09220686065086,1.05506791291381,0.866364470720326,2.98257638155124,0.672325146451775,0.602694528023977,0.730310090387373,0,2.09305798730539,5.30401797235058,1.25381888591235,2.57612388417951,3.83248390204076,2.13422487311165,0,0,0,0,0,0.154816123316076,0,0.30120591877825,0,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,1.91793842765295,1.44575660953827,1.00267582127178,2.462390822334,3.1811437882044,5.35298357332899,0.756278537312543,1.33037638477538,1.31752178539689,0.589405839739707,1.09288586487763,1.48313777113772,0,0,0,0,0,0,0.39752481473341,0,2.42998351125316,1.13061588384802,1.67799774483962,0,0.208994966536811,0,0.35576626268671,0,0,0,0.732186172644509,0.367663080345869,0.81014194788176,0.535798369704479,0.898117490504679,0.788280363383256,3.06633274931766,0,1.64881569537367,0,0,0,0,0.506522046658319,0.264818361626438,1.43418310374407,1.77334191099179,1.68203280042692,0,0,0.622422070799533,0.134710672069688,0.653847612453835,0.151357427644931,0,1.17160715916898,0.312160076830321,0,1.19558944441441,0.587172493218824,0.323745888736263,0.561803226808994,0.61246251376468,1.22834317311768,0.723280468230358,0,0.494533858557114,0,1.43723628363248,1.0100166837244,1.50142223846357,1.10825646193673,0.438977620880838,0.612975591598039,1.05166641234618,0.340296549480063,0.538168907066586,0,0,1.20036438433761,0.618315175430633,0,0.18611685633159,2.02531598689519,0.68205903612839,0.757301322732344,0.368199594569197,1.13152239773168,1.42003837006646,0.503760491138201,1.01736355386293,0.193260853163297,0,0,0,0,0.116193942869518,0.10366105501537,1.00928340350251,0.36497735907583,0,0,0,0,0.721879481669586,0.946454400318751,0.337169380156203,0.723033089650446,0.661763836394364,0.871517776369625,0.71181185733329,0.269662616320329,0,0,0,0,1.6462960453256,0,0,0,0,0,0,1.71567810298526,0,0,0.402115889646523,0.0925884451585296,0.325808305310325,1.03993478527958,4.3299402607582,0.579652024875384,0.587043471179108,0.288732895522148,0,0.380508304469197,0.790204397959275,0,0,0,0,0,0,0,0.0895585227028483,0,1.15014803749563,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0.784917590417525,0.43596006883328,1.1734125731352,0.129271715757778,0,0,0.26593811658487,0,1.80045161983499,7.09245660116391,3.99633268524149,0,0,2.46972101034231,0,0.355391948742546,0.791951872933429,0,0.871533458600294,0.299918973546171,0,0,0,0.958499421966331,2.29723871668228,1.42636905040718,0,0.205476322550383,0.179060963239896,0,0,0,0,0.254094624222463,2.60279707715243,0.773288812777695,1.50764638800914,1.27587750330633,0,0,0,1.96306386750624,0.500170521059677,0.542530047399471,0.207970861530807,0.356857977594324,0.157702415033935,0.117141414992713,0.300946099727719,0,5.17365356462525,1.99267679560631,2.02806085395873,0.0868836144680828,1.17480694477644,0.686286847621712,0,0,0,0.303127571446259,1.66435439510497,1.5119514666484,0,0,0.280660094433074,0.768834895534206,0,0,1.48418066444991,3.23840356985577,4.26148140751505,4.02423064467665,2.07701771673448,5.11325665223821,0.120859449591622,0.200506470303285,0,0.574072240823034,0.364182336013434,0.655622074797121,0.451199612907412,0.231046011313244,0,0,0,0,0.510281115829547,0,0,0.541892875087706,1.50506932156456,0,0,0.447749509444357,0,0,1.28225062558195,0,0,0.309123034943167,0.0915694648183434,0.082509499920588,0.574265537996172,0,0,0.96670718292122,0.616194468458578,0.767518373630648,0.689182862422653,0.322260734604821,1.59518363305651,1.53407929348982,0.178064071293475,0,0.192190067365106,0.638063562472921,0,0,0,0,0.924100740528266,0.532306030317022,0,0.18532421910392,0,0,1.2655176988749,0.190630193923825,1.02359116524534,0.855877976067841,0.318203247925937,0,0,0.823611089208164,0.471249609382746,0.404364963146632,0,0,1.46290121726877,0.731140468893853,0,0.409499734223957,0.282810863907425,2.26016233240486,0,0,0.438450885253763,1.15755106853338,0.655894752046633,0,0,1.12678241012897,0.143411352204052,0.294747123039363,0,1.77380532035299,1.05553817648832,0.987884678879706,5.31262443272001,2.0996083214699,0.288666338176536,0.670302275535787,0,0,0,0,0.886860307073351,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0.490080431962063,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0.146508179271894,0.121360521749513,0,0,0.95497793895076,2.37571744666111,1.22864280839693,0.994147647766298,1.1253553312841,0.667852230137435,0,0,4.18420775327246,0.276283915531148,0.251932747854276,0.306806047506464,0,0,0.0898683511473268,0,0,0.394573622547734,0,0,0,0.834912883456661,0,0,0.0874599999961957,0,0,0,0.472775363535873,0,0.874813840149763,0.173624994933292,0,2.05013945663194,0,1.21637185924347,0.295547618953547,0.658156191461918,0.32681539055697,0,0.846452843541768,0.227884111694002,0.23056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| ||
|short_description=p2@SCARA3 | |||
}} | }} |
Latest revision as of 19:52, 17 September 2015
Short description: | p2@SCARA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SCARA3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000337221_5end |
EntrezGene: | SCARA3 |
HGNC: | 19000 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
oligodendrocyte | 1.71e-08 | 7 |
macroglial cell | 1.71e-08 | 7 |
astrocyte | 1.71e-08 | 7 |
oligodendrocyte precursor cell | 1.71e-08 | 7 |
fibroblast | 1.02e-07 | 76 |
extraembryonic cell | 2.88e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 6.90e-14 | 132 |
neural plate | 3.40e-13 | 82 |
presumptive neural plate | 3.40e-13 | 82 |
neurectoderm | 3.97e-12 | 86 |
posterior neural tube | 9.98e-12 | 15 |
chordal neural plate | 9.98e-12 | 15 |
neural tube | 1.26e-09 | 56 |
neural rod | 1.26e-09 | 56 |
future spinal cord | 1.26e-09 | 56 |
neural keel | 1.26e-09 | 56 |
ecto-epithelium | 4.51e-09 | 104 |
ectoderm-derived structure | 9.62e-09 | 171 |
ectoderm | 9.62e-09 | 171 |
presumptive ectoderm | 9.62e-09 | 171 |
central nervous system | 1.35e-08 | 81 |
segmental subdivision of hindbrain | 3.08e-08 | 12 |
hindbrain | 3.08e-08 | 12 |
presumptive hindbrain | 3.08e-08 | 12 |
nervous system | 1.30e-07 | 89 |
regional part of nervous system | 1.60e-07 | 53 |
regional part of brain | 1.60e-07 | 53 |
segmental subdivision of nervous system | 1.84e-07 | 13 |
anterior segment of eyeball | 3.34e-07 | 14 |
extraembryonic membrane | 8.42e-07 | 14 |
membranous layer | 8.42e-07 | 14 |
pre-chordal neural plate | 9.35e-07 | 61 |