FFCP PHASE1:Hg19::chr9:2621557..2621582,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr9:2621557..2621582,+ to FFCP PHASE1:Hg19::chr9:2621557..2621582,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7436 | |EntrezGene=7436 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12698 | |HGNC=12698 | ||
|TSSclassifier=strong | |||
|UniProt=P98155,Q5VVF5,A8K0G2 | |UniProt=P98155,Q5VVF5,A8K0G2 | ||
|association_with_transcript=-210bp_to_NM_001018056,NM_003383,uc003zhk.1,uc003zhl.1,uc003zhm.1,uc003zhn.1_5end | |||
|cluster_id=chr9:2621557..2621582,+ | |||
|description=CAGE_peak_2_at_VLDLR_5end | |||
|id=chr9:2621557..2621582,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.75e-17!94;UBERON:0001016!1.75e-17!94;UBERON:0007023!5.19e-17!115;UBERON:0005743!6.67e-16!86;UBERON:0001049!9.91e-16!57;UBERON:0005068!9.91e-16!57;UBERON:0006241!9.91e-16!57;UBERON:0007135!9.91e-16!57;UBERON:0001017!2.15e-15!82;UBERON:0003075!6.56e-14!86;UBERON:0007284!6.56e-14!86;UBERON:0002346!2.85e-13!90;UBERON:0000955!5.98e-13!69;UBERON:0006238!5.98e-13!69;UBERON:0002616!1.37e-12!59;UBERON:0003080!3.83e-12!42;UBERON:0002780!7.17e-12!41;UBERON:0001890!7.17e-12!41;UBERON:0006240!7.17e-12!41;UBERON:0002020!1.50e-11!34;UBERON:0003528!1.50e-11!34;UBERON:0001893!2.36e-11!34;UBERON:0002791!3.37e-11!33;UBERON:0003056!8.10e-11!61;UBERON:0001869!1.90e-10!32;UBERON:0004121!3.69e-10!169;UBERON:0000924!6.57e-10!173;UBERON:0006601!6.57e-10!173;UBERON:0000475!2.12e-08!365;UBERON:0000025!4.26e-08!194;UBERON:0000033!1.15e-07!123;UBERON:0000064!1.66e-07!219;UBERON:0000956!2.51e-07!25;UBERON:0000203!2.51e-07!25;UBERON:0000153!3.12e-07!129;UBERON:0007811!3.12e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0003528;4.46e-11;34!UBERON:0002020;4.46e-11;34!UBERON:0001893;1.39e-10;34!UBERON:0002791;1.57e-10;32!UBERON:0001869;3.12e-10;32!UBERON:0000073;1.55e-09;53!UBERON:0002616;1.55e-09;53!UBERON:0002780;2.44e-09;41!UBERON:0001890;2.44e-09;41!UBERON:0000956;6.96e-08;25!UBERON:0000203;6.96e-08;25!UBERON:0002619;5.60e-07;22!UBERON:0001016;9.32e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,4.37e-18,114;UBERON:0001016,8.22e-17,89;UBERON:0001049,2.83e-16,56;UBERON:0005068,2.83e-16,56;UBERON:0006241,2.83e-16,56;UBERON:0007135,2.83e-16,56;UBERON:0000073,3.09e-15,53;UBERON:0002616,3.09e-15,53;UBERON:0003075,3.14e-15,82;UBERON:0007284,3.14e-15,82;UBERON:0001017,3.53e-15,81;UBERON:0002346,7.07e-14,86;UBERON:0002780,6.59e-13,41;UBERON:0001890,6.59e-13,41;UBERON:0003080,6.59e-13,41;UBERON:0006240,6.59e-13,41;UBERON:0000955,8.70e-13,68;UBERON:0006238,8.70e-13,68;UBERON:0003528,1.19e-12,34;UBERON:0002020,1.19e-12,34;UBERON:0001893,1.96e-12,34;UBERON:0002791,8.99e-12,32;UBERON:0001869,1.92e-11,32;UBERON:0003056,1.16e-10,61;UBERON:0010314,2.91e-10,132;UBERON:0010371,1.33e-09,104;UBERON:0004121,2.59e-08,171;UBERON:0000924,2.59e-08,171;UBERON:0006601,2.59e-08,171;UBERON:0000956,5.01e-08,25;UBERON:0000203,5.01e-08,25;UBERON:0011216,2.61e-07,223;UBERON:0002619,3.95e-07,22;UBERON:0000025,5.69e-07,192 | |||
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| ||
|short_description=p2@VLDLR | |||
}} | }} |
Latest revision as of 00:23, 17 September 2015
Short description: | p2@VLDLR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_VLDLR_5end |
Coexpression cluster: | NA |
Association with transcript: | -210bp_to_NM_001018056, NM_003383, uc003zhk.1, uc003zhl.1, uc003zhm.1, uc003zhn.1_5end |
EntrezGene: | VLDLR |
HGNC: | 12698 |
UniProt: | P98155Q5VVF5A8K0G2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 4.37e-18 | 114 |
nervous system | 8.22e-17 | 89 |
neural tube | 2.83e-16 | 56 |
neural rod | 2.83e-16 | 56 |
future spinal cord | 2.83e-16 | 56 |
neural keel | 2.83e-16 | 56 |
regional part of nervous system | 3.09e-15 | 53 |
regional part of brain | 3.09e-15 | 53 |
neural plate | 3.14e-15 | 82 |
presumptive neural plate | 3.14e-15 | 82 |
central nervous system | 3.53e-15 | 81 |
neurectoderm | 7.07e-14 | 86 |
regional part of forebrain | 6.59e-13 | 41 |
forebrain | 6.59e-13 | 41 |
anterior neural tube | 6.59e-13 | 41 |
future forebrain | 6.59e-13 | 41 |
brain | 8.70e-13 | 68 |
future brain | 8.70e-13 | 68 |
brain grey matter | 1.19e-12 | 34 |
gray matter | 1.19e-12 | 34 |
telencephalon | 1.96e-12 | 34 |
regional part of telencephalon | 8.99e-12 | 32 |
cerebral hemisphere | 1.92e-11 | 32 |
pre-chordal neural plate | 1.16e-10 | 61 |
structure with developmental contribution from neural crest | 2.91e-10 | 132 |
ecto-epithelium | 1.33e-09 | 104 |
ectoderm-derived structure | 2.59e-08 | 171 |
ectoderm | 2.59e-08 | 171 |
presumptive ectoderm | 2.59e-08 | 171 |
cerebral cortex | 5.01e-08 | 25 |
pallium | 5.01e-08 | 25 |
organ system subdivision | 2.61e-07 | 223 |
regional part of cerebral cortex | 3.95e-07 | 22 |
tube | 5.69e-07 | 192 |