Personal tools

FFCP PHASE1:Mm9::chr9:44789884..44789917,+: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
 
(7 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{FFCP
{{FFCP
|id=chr9:44789884..44789917,+
|DHSsupport=NA
|short_description=p1@Cd3d
|DPIdataset=NA
|description=CAGE_peak_1_at_Cd3d_5end
|association_with_transcript=8bp_to_ENSMUST00000034602_5end
|EntrezGene=12500
|EntrezGene=12500
|HGNC=
|HGNC=
|MCL_coexpression_id=33
|TSSclassifier=NA
|UniProt=P04235
|UniProt=P04235
|association_with_transcript=8bp_to_ENSMUST00000034602_5end
|cluster_id=chr9:44789884..44789917,+
|description=CAGE_peak_1_at_Cd3d_5end
|id=chr9:44789884..44789917,+
|ontology_enrichment_celltype=CL:0000791!3.62e-08!9;CL:0000789!3.62e-08!9;CL:0002420!3.62e-08!9;CL:0002419!3.62e-08!9;CL:0000790!3.62e-08!9;CL:0000624!2.07e-07!8;CL:0000838!8.01e-07!12;CL:0000084!9.55e-07!11;CL:0000827!9.55e-07!11
|ontology_enrichment_celltype_v019_2=CL:0000791,5.11e-12,9;CL:0000789,5.11e-12,9;CL:0002420,5.11e-12,9;CL:0002419,5.11e-12,9;CL:0000790,5.11e-12,9;CL:0000624,7.95e-11,8;CL:0000084,2.52e-09,11;CL:0000827,2.52e-09,11;CL:0000893,2.38e-08,6;CL:0002489,2.38e-08,6;CL:0000898,2.38e-08,6;CL:0000809,2.38e-08,6;CL:0000810,2.38e-08,6;CL:0000895,2.38e-08,6;CL:0000808,2.38e-08,6;CL:0000894,2.38e-08,6;CL:0000806,2.38e-08,6;CL:0000807,2.38e-08,6;CL:0000805,2.38e-08,6;CL:0002425,2.38e-08,6;CL:0002436,2.38e-08,6;CL:0002427,2.38e-08,6;CL:0002428,2.38e-08,6;CL:0002429,2.38e-08,6;CL:0002433,2.38e-08,6;CL:0002431,2.38e-08,6;CL:0002432,2.38e-08,6;CL:0000838,2.54e-08,12;CL:0002031,4.51e-08,25;CL:0000542,1.77e-07,13;CL:0000051,1.77e-07,13
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0004177!2.66e-15!29;UBERON:0003408!5.69e-13!24;UBERON:0002370!1.44e-12!23;UBERON:0000974!1.44e-12!23;UBERON:0004807!1.44e-12!23;UBERON:0005058!1.44e-12!23;UBERON:0003351!1.44e-12!23;UBERON:0009113!1.44e-12!23;UBERON:0003295!1.44e-12!23;UBERON:0009722!1.44e-12!23;UBERON:0005562!1.44e-12!23;UBERON:0007690!1.44e-12!23;UBERON:0002193!4.68e-12!48;UBERON:0006562!1.36e-11!24;UBERON:0001557!1.36e-11!24;UBERON:0001042!1.36e-11!24;UBERON:0008814!1.36e-11!24;UBERON:0009145!1.36e-11!24;UBERON:0001004!4.66e-11!42;UBERON:0002390!7.39e-11!45;UBERON:0003061!7.39e-11!45;UBERON:0000065!1.16e-10!41;UBERON:0000072!3.72e-09!27;UBERON:0001007!2.28e-08!128;UBERON:0001555!2.28e-08!128;UBERON:0007026!2.28e-08!128;UBERON:0004119!3.48e-08!130;UBERON:0000925!3.48e-08!130;UBERON:0006595!3.48e-08!130;UBERON:0004921!7.25e-08!126;UBERON:0004185!7.25e-08!126;UBERON:0005057!8.82e-08!51;UBERON:0002405!1.91e-07!70
|ontology_enrichment_uberon_v019_2=UBERON:0004177,1.46e-23,29;UBERON:0005057,1.46e-23,29;UBERON:0003408,4.29e-21,24;UBERON:0002193,7.64e-21,48;UBERON:0002405,7.64e-21,48;UBERON:0002370,1.84e-20,23;UBERON:0000974,1.84e-20,23;UBERON:0004807,1.84e-20,23;UBERON:0005058,1.84e-20,23;UBERON:0003351,1.84e-20,23;UBERON:0009113,1.84e-20,23;UBERON:0003295,1.84e-20,23;UBERON:0009722,1.84e-20,23;UBERON:0005562,1.84e-20,23;UBERON:0007690,1.84e-20,23;UBERON:0002390,6.53e-20,45;UBERON:0003061,6.53e-20,45;UBERON:0006562,2.69e-19,24;UBERON:0001557,2.69e-19,24;UBERON:0001042,2.69e-19,24;UBERON:0008814,2.69e-19,24;UBERON:0009145,2.69e-19,24;UBERON:0000077,5.83e-18,35;UBERON:0001004,5.50e-17,42;UBERON:0000065,2.36e-16,41;UBERON:0000072,2.49e-16,27;UBERON:0007811,1.45e-11,36;UBERON:0001007,3.37e-10,116;UBERON:0001555,3.37e-10,116;UBERON:0007026,3.37e-10,116;UBERON:0001041,4.37e-10,80;UBERON:0004921,5.65e-10,114;UBERON:0004119,8.45e-10,118;UBERON:0000925,8.45e-10,118;UBERON:0006595,8.45e-10,118;UBERON:0003081,8.87e-10,87;UBERON:0000153,1.45e-08,43;UBERON:0005911,3.27e-08,69;UBERON:0002530,1.12e-07,65
|phase1_expression=0,0,0,0,0,0,0,254.243823856464,81.516670125815,60.8567768437183,111.291679346578,59.988663564493,281.282799276971,266.369966170685,1.66554880907831,6.2767332890846,1.39912375625629,24.4483178152634,26.4630856859076,12.7316895539409,5.27268398936633,0,0.261199789138935,1.75991665072747,0.68822784320151,1.14846392823004,0,0.215471232685889,2.66032787238923,6.30075324399827,3.32595765982957,0,0,0,0,0.332469290716985,0.204169356262369,8.78916424547506,10.9386948233332,9.42342739152837,15.2940186888064,16.3930916390027,17.9638830621527,0,0,0,0,0,0,0,0,0,0.503347818173209,184.241984070881,163.341586383238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220868540951614,0,0,0,0,0,0,0,0,0,0,0,0,0.294628585473668,0,0,0.075726193333184,0,0,0,0,0,0,0,6.74133216632409,0,0,0,0,0,0,0,0,0,0,4.22480354960522,50.7518251948457,2.67195850316685,0.867426633830679,0,0,0.150722640552623,0.23517741427141,0.125666591329675,0,0.578397427679647,1.76922110389975,0.323533699894818,0.441683036920787,0,1.86391761218122,0,0,6.13096932500619,0,0,0,0,0,0,0,0,0,0,0.101839363850316,1.49288364732112,0.252722758433675,0.210441855886474,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.710234206755631,0.983821158737019,0,0,0,1.5179494507732,0,1.47750717671186,0.972825714550269,1.75439984910399,1.97595103761946,0.671032093801859,0,0,10.5734010554815,1.05780226665418,0,0,0,0.201683524623343,0,0.380451252225118,0.474529061544512,0.164698954724011,1.00534083520108,0.397912944082302,1.36474860983384,0,0.648414149624083,1.99141273254367,0,0,0,0,0,0,0.189709611372772,0,0.156998727841375,0.246794327843601,1.1858105083486,0,0,0,0,0.241177159752417,0,0,0.324270453550071,0,2.87536413054709,0.372140947668503,2.49630138491648,0.505157755894224,0.179397413521912,0,9.42241269849684,0,0,0.169745085775188,0,2.84760637651087,0.238043640886014,0.390267295715598,1.89162172927429,0.8858587585951,1.43509291791738,5.89907932976657,4.66249451037918,3.18227928879325,0,0,3.93411418415229,3.03530420935206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.851640511249612,0.178065603667255,0,0.824850614862677,2.65490276679926,0,0,0,0.295301892880773,0.307435147943927,0,0,0.356497378384721,2.84433082142234,0,0,0.340439605753788,0,0,0,0,0,0,0,0,0.21183207086382,0,1.15420377059036,0.161464426695906,0.120625849856312,0.238744688006273,0.328281799490123,1.45740418314925,0.18542530201051,15.2075083910089,0.412773735926445,1.85194527369712,2.82552685507037,6.83471138605126,14.1842467388044,0,0.139951452323658,0,0,0,0,0.216010681643603,0,0.655087691238533,0.134864346384821,0.165306911450672,0.26175594198403,0.777689839750757,1.86401793926078,0,0,0,0,0.516639293910924,0,0,0.13020438484395,0.104859344425711,0,0,200.035039357637,22.7052241124984,62.7563948277094,104.846104143081,108.132124183159,132.123100929541,128.128349188287,133.363643038643,150.540976872688,145.55500071105,166.766510216334,153.301246403631,187.132031990441,214.469115503179,0,0,0,0,0.386379188064381,0.563047426353546,0.183151624267265,0.428736758158132,2.50786052017682,0,0,0,0,0,0,0,0,0,0,0,0,0,0.729320151204882,0,0.183843508450014,0,0.206035057238894,0.962757628775446,1.01078884705519,1.01391719956096,0.754505365544305,0.468207537349412,0.576226371643824,0.459483751644906,0,0.231768651889711,0.38581844092741,0,0.294397840268795,0.342869252385415,0.177475806159338,0.476872379894642,0.581385666529314,0.282328141245992,0.676916863133412,0.365855945745545,1.57841826862706,0.679020569229309,0,0.355905054372522,0.394017929502254,0.409231043169689,0.309873682371932,1.35034627686799,0,1.87145286756327,1.28922632428979,0.191288332068843,0.882365676478062,0.695603506861264
|phase1_expression=0,0,0,0,0,0,0,254.243823856464,81.516670125815,60.8567768437183,111.291679346578,59.988663564493,281.282799276971,266.369966170685,1.66554880907831,6.2767332890846,1.39912375625629,24.4483178152634,26.4630856859076,12.7316895539409,5.27268398936633,0,0.261199789138935,1.75991665072747,0.68822784320151,1.14846392823004,0,0.215471232685889,2.66032787238923,6.30075324399827,3.32595765982957,0,0,0,0,0.332469290716985,0.204169356262369,8.78916424547506,10.9386948233332,9.42342739152837,15.2940186888064,16.3930916390027,17.9638830621527,0,0,0,0,0,0,0,0,0,0.503347818173209,184.241984070881,163.341586383238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220868540951614,0,0,0,0,0,0,0,0,0,0,0,0,0.294628585473668,0,0,0.075726193333184,0,0,0,0,0,0,0,6.74133216632409,0,0,0,0,0,0,0,0,0,0,4.22480354960522,50.7518251948457,2.67195850316685,0.867426633830679,0,0,0.150722640552623,0.23517741427141,0.125666591329675,0,0.578397427679647,1.76922110389975,0.323533699894818,0.441683036920787,0,1.86391761218122,0,0,6.13096932500619,0,0,0,0,0,0,0,0,0,0,0.101839363850316,1.49288364732112,0.252722758433675,0.210441855886474,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.710234206755631,0.983821158737019,0,0,0,1.5179494507732,0,1.47750717671186,0.972825714550269,1.75439984910399,1.97595103761946,0.671032093801859,0,0,10.5734010554815,1.05780226665418,0,0,0,0.201683524623343,0,0.380451252225118,0.474529061544512,0.164698954724011,1.00534083520108,0.397912944082302,1.36474860983384,0,0.648414149624083,1.99141273254367,0,0,0,0,0,0,0.189709611372772,0,0.156998727841375,0.246794327843601,1.1858105083486,0,0,0,0,0.241177159752417,0,0,0.324270453550071,0,2.87536413054709,0.372140947668503,2.49630138491648,0.505157755894224,0.179397413521912,0,9.42241269849684,0,0,0.169745085775188,0,2.84760637651087,0.238043640886014,0.390267295715598,1.89162172927429,0.8858587585951,1.43509291791738,5.89907932976657,4.66249451037918,3.18227928879325,0,0,3.93411418415229,3.03530420935206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.851640511249612,0.178065603667255,0,0.824850614862677,2.65490276679926,0,0,0,0.295301892880773,0.307435147943927,0,0,0.356497378384721,2.84433082142234,0,0,0.340439605753788,0,0,0,0,0,0,0,0,0.21183207086382,0,1.15420377059036,0.161464426695906,0.120625849856312,0.238744688006273,0.328281799490123,1.45740418314925,0.18542530201051,15.2075083910089,0.412773735926445,1.85194527369712,2.82552685507037,6.83471138605126,14.1842467388044,0,0.139951452323658,0,0,0,0,0.216010681643603,0,0.655087691238533,0.134864346384821,0.165306911450672,0.26175594198403,0.777689839750757,1.86401793926078,0,0,0,0,0.516639293910924,0,0,0.13020438484395,0.104859344425711,0,0,200.035039357637,22.7052241124984,62.7563948277094,104.846104143081,108.132124183159,132.123100929541,128.128349188287,133.363643038643,150.540976872688,145.55500071105,166.766510216334,153.301246403631,187.132031990441,214.469115503179,0,0,0,0,0.386379188064381,0.563047426353546,0.183151624267265,0.428736758158132,2.50786052017682,0,0,0,0,0,0,0,0,0,0,0,0,0,0.729320151204882,0,0.183843508450014,0,0.206035057238894,0.962757628775446,1.01078884705519,1.01391719956096,0.754505365544305,0.468207537349412,0.576226371643824,0.459483751644906,0,0.231768651889711,0.38581844092741,0,0.294397840268795,0.342869252385415,0.177475806159338,0.476872379894642,0.581385666529314,0.282328141245992,0.676916863133412,0.365855945745545,1.57841826862706,0.679020569229309,0,0.355905054372522,0.394017929502254,0.409231043169689,0.309873682371932,1.35034627686799,0,1.87145286756327,1.28922632428979,0.191288332068843,0.882365676478062,0.695603506861264
|short_description=p1@Cd3d
}}
}}

Latest revision as of 17:20, 26 September 2015

Short description:p1@Cd3d
Species:Mouse (Mus musculus)
DPI dataset: NA
TSS-like-by-RIKEN-classifier(Yes/No): NA
DHS support(Yes/No): NA
Description: CAGE_peak_1_at_Cd3d_5end
Coexpression cluster:MCL_coexpression_mm9:33
Association with transcript: 8bp_to_ENSMUST00000034602_5end
EntrezGene:Cd3d
Link to Zenbu:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression

Sample

p1@Cd3d

Atoh1+ Inner ear hair cells - organ of corti, pool1.CNhs12533.12158-128G70.00
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13242.11850-124I50.00
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13233.11851-124I60.00
CD326+ enterocyte, pool1.CNhs13542.11848-124I30.00
CD326+ enterocyte, pool2.CNhs13197.11849-124I40.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13236.11852-124I70.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13210.11853-124I80.00
CD4+CD25+ regulatory T cells, pool2 (Balb_cAJcl).CNhs13221.11818-124E9254.24
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J).CNhs13219.11816-124E781.52
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl).CNhs13226.11820-124F260.86
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J).CNhs13218.11815-124E6111.29
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl).CNhs13225.11819-124F159.99
CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J).CNhs13217.11813-124E4281.28
CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl).CNhs13220.11817-124E8266.37
CD41+ megakaryocyte cancer, donor1.CNhs13079.11774-124A11.67
CD41+ megakaryocyte cancer, donor2.CNhs13213.11776-124A36.28
CD41+ megakaryocyte cancer, donor3.CNhs13506.11778-124A51.40
CD41+ megakaryocyte control, donor1.CNhs13212.11775-124A224.45
CD41+ megakaryocyte control, donor2.CNhs13214.11777-124A426.46
CD41+ megakaryocyte control, donor3.CNhs13201.11779-124A612.73
Clontech Mouse Universal Reference Total RNA, pool1.CNhs10609.10001-101A35.27
EBF KO HPCs induced to T cell, 00hr00min, biol_rep1.CNhs11058.12972-138H20.00
EBF KO HPCs induced to T cell, 00hr00min, biol_rep2.CNhs12980.12988-138I90.26
Follicle Associated Epithelium, pool2.CNhs13211.10262-104D11.76
Follicle Associated Epithelium, pool3.CNhs13200.10263-104D20.69
GP2+ M cell, pool1.CNhs13228.11845-124H91.15
GP2+ M cell, pool2.CNhs13231.11846-124I10.00
GP2+ M cell, pool3.CNhs13240.11847-124I20.22
Ileum epithelium, pool1.CNhs13199.10252-104B92.66
Ileum epithelium, pool2.CNhs13232.10253-104C16.30
Ileum epithelium, treated with RANKL, day03, pool3.CNhs13234.10260-104C83.33
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep1.CNhs12449.13063-139I30.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep2.CNhs12668.13129-140G60.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep3.CNhs12770.13195-141E90.00
Lgr5 positive intestinal stem cells, pool1.CNhs12555.12228-129F50.00
Lgr5 positive intestinal stem cells, pool2.CNhs12556.12229-129F60.33
Lgr5 positive intestinal stem cells, pool3.CNhs12557.12230-129F70.20
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL).CNhs12539.12159-128G88.79
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL).CNhs12198.12161-128H110.94
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL).CNhs12542.12163-128H39.42
MC1+Gr1+ myeloid-derived suppressor cells control, donor1 (4,5,6PBS).CNhs12540.12160-128G915.29
MC1+Gr1+ myeloid-derived suppressor cells control, donor2 (0127 PBS).CNhs12541.12162-128H216.39
MC1+Gr1+ myeloid-derived suppressor cells control, donor3 (0128 PBS).CNhs12543.12164-128H417.96
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep1.CNhs11055.11484-119D80.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep2.CNhs11056.11485-119D90.00
Mouse Aortic Smooth Muscle cells, donor1.CNhs11297.11299-117B30.00
Mouse Astrocytes - cerebellar, donor1.CNhs13077.11708-123B70.00
Mouse Astrocytes - cerebellar, donor2.CNhs12076.11550-120C20.00
Mouse Astrocytes - hippocampus, donor1.CNhs12129.11709-123B80.00
Mouse Astrocytes - hippocampus, donor2.CNhs12077.11551-120C30.00
Mouse Astrocytes, donor2.CNhs12078.11552-120C40.00
Mouse Astrocytes, donor3.CNhs12107.11633-122C40.00
Mouse CD19+ B Cells, donor1.CNhs13531.11856-125A20.50
Mouse CD4+ T Cells, donor1.CNhs13509.11854-124I9184.24
Mouse CD8+ T Cells, donor1.CNhs13511.11855-125A1163.34
Mouse Cardiac Myocytes, donor1.CNhs12355.11711-123C10.00
Mouse Cardiac Myocytes, donor2.CNhs12356.11729-123E10.00
Mouse Cardiac Myocytes, donor3.CNhs12353.11634-122C50.00
Mouse Granule cells, donor1.CNhs12131.11713-123C30.00
Mouse Granule cells, donor2.CNhs12357.11731-123E30.00
Mouse Granule cells, donor3.CNhs12108.11636-122C70.00
Mouse Meningeal cells, donor1.CNhs12132.11716-123C60.00
Mouse Meningeal cells, donor3.CNhs12109.11639-122D10.00
Mouse Mesenchymal stem cells - bone marrow derived, donor1.CNhs12628.11717-123C70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor2.CNhs12633.11735-123E70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor3.CNhs12616.11640-122D20.00
Mouse Microglia, donor1.CNhs12629.11718-123C80.00
Mouse Microglia, donor2.CNhs12634.11736-123E80.00
Mouse Neurons - cortical, donor1.CNhs12025.11724-123D50.00
Mouse Neurons - cortical, donor2.CNhs11947.11742-123F50.00
Mouse Neurons - cortical, donor3.CNhs12112.11647-122D90.00
Mouse Neurons - dorsal spinal cord, donor2.CNhs12635.11738-123F10.00
Mouse Neurons - dorsal spinal cord, donor3.CNhs12618.11643-122D50.22
Mouse Neurons - hippocampal, donor1.CNhs12133.11721-123D20.00
Mouse Neurons - hippocampal, donor2.CNhs12359.11739-123F20.00
Mouse Neurons - hippocampal, donor3.CNhs12110.11644-122D60.00
Mouse Neurons - raphe, donor1.CNhs12631.11722-123D30.00
Mouse Neurons - raphe, donor2.CNhs12636.11740-123F30.00
Mouse Neurons - raphe, donor3.CNhs12619.11645-122D70.00
Mouse Neurons - striatal, donor1.CNhs12134.11723-123D40.00
Mouse Neurons - striatal, donor2.CNhs12360.11741-123F40.00
Mouse Neurons - striatal, donor3.CNhs12111.11646-122D80.00
Mouse Neurons - substantia nigra, donor4, tech_rep1.CNhs12612.11489-119E40.00
Mouse Neurons - substantia nigra, donor5.CNhs12614.11490-119E50.00
Mouse Neurons - substantia nigra, donor6.CNhs12643.11770-123I60.00
Mouse Neurons - ventral spinal cord, donor1.CNhs12632.11725-123D60.29
Mouse Neurons - ventral spinal cord, donor2.CNhs12638.11743-123F60.00
Mouse Neurons - ventral spinal cord, donor3.CNhs12113.11648-122E10.00
Mouse Schwann, donor1.CNhs12507.11728-123D90.08
Mouse Schwann, donor2.CNhs12573.11746-123F90.00
Mouse hepatic Sinusoidal Endothelial Cells, donor1.CNhs13209.11830-124G30.00
Mouse hepatic Stellate Cells (lipocyte), donor1.CNhs13196.11825-124F70.00
Mouse hepatocyte, donor1.CNhs13078.11714-123C40.00
Mouse hepatocyte, donor3.CNhs12615.11637-122C80.00
Mouse hepatocyte, donor6.CNhs13090.11822-124F40.00
Mouse hepatocyte, donor8.CNhs13091.11824-124F60.00
SABiosciences XpressRef Mouse Universal Total RNA, pool1.CNhs10611.10003-101A76.74
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep1 (000hC4).CNhs11939.12338-130I70.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep2 (000hC5).CNhs13275.12460-132E30.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep3 (000hC6).CNhs13324.12582-133I80.00
Sox2+ Supporting cells - organ of corti, pool1.CNhs12532.12157-128G60.00
TSt-4/DLL1 feeder cells, biol_rep1.CNhs13407.12971-138H10.00
TSt-4/DLL1 feeder cells, biol_rep2.CNhs13408.12987-138I80.00
TSt-4/DLL1 feeder cells, biol_rep3.CNhs13409.13003-139B60.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep1.CNhs13739.13367-143G10.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep2.CNhs13740.13368-143G20.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep3.CNhs13741.13369-143G30.00
Universal RNA - Mouse Normal Tissues Biochain, pool1.CNhs10613.10008-101B64.22
accessory axillary lymph node, adult.CNhs10475.1063-29H950.75
adrenal gland, adult.CNhs10508.49-24D72.67
adrenal gland, embryo E14.CNhs11038.406-44C50.87
adrenal gland, embryo E16.CNhs11004.1254-43D60.00
adrenal gland, embryo E17.CNhs11043.1263-45I10.00
adrenal gland, embryo E18.CNhs11026.1262-18F50.15
adrenal gland, neonate N00.CNhs11191.1311-23C10.24
adrenal gland, neonate N25.CNhs11223.1377-27I30.13
amnion, adult pregnant day17.5.CNhs10488.583-22A80.00
aorta, adult.CNhs10498.46-23H10.58
bone (os femoris), adult.CNhs10483.56-12G21.77
bone (os femoris), neonate N02.CNhs11227.1985-43F50.32
bone (os femoris), neonate N16.CNhs11225.1525-43A60.44
bone (os femoris), neonate N20.CNhs11195.1350-25C30.00
cecum, adult.CNhs10467.37-13H41.86
cerebellum, adult.CNhs10494.15-8B20.00
cerebellum, neonate N30.CNhs11135.1395-42I20.00
colon, adult.CNhs10468.36-18H76.13
common myeloid progenitor CMP, biol_rep1.CNhs12550.12122-128C70.00
common myeloid progenitor CMP, biol_rep2.CNhs12203.12125-128D10.00
common myeloid progenitor CMP, biol_rep3.CNhs12551.12128-128D40.00
corpora quadrigemina, adult.CNhs10501.16-22A40.00
corpus striatum, adult.CNhs10487.19-21D80.00
corpus striatum, neonate N00.CNhs11226.630-43F10.00
cortex, adult.CNhs10473.12-14D50.00
cortex, neonate N30.CNhs11107.1392-42F20.00
diencephalon, adult.CNhs10482.20-12F20.00
diencephalon, neonate N30.CNhs11201.1388-42B20.00
epididymis and seminiferous tubule, neonate N00.CNhs11218.1310-23B10.10
epididymis and seminiferous tubule, neonate N30.CNhs11199.1387-42A21.49
epididymis, adult.CNhs10490.58-23B20.25
eyeball, adult.CNhs10484.31-12G40.21
eyeball, embryo E12.CNhs11016.345-16C60.00
eyeball, embryo E14.CNhs10521.399-16E20.00
eyeball, embryo E15.CNhs10593.426-16C90.00
eyeball, embryo E17.CNhs11023.1261-18D40.00
eyeball, neonate N00.CNhs11207.633-15C60.00
eyeball, neonate N01.CNhs11140.1532-43E70.00
eyeball, neonate N02.CNhs11205.1551-44G80.00
eyeball, neonate N16.CNhs11188.777-19A20.00
forelimb, embryo E11.CNhs10596.335-25E20.00
forelimb, embryo E12.CNhs10600.359-14H20.00
forelimb, embryo E13.CNhs10589.384-1E20.00
forelimb, embryo E14.CNhs10577.413-26A80.00
forelimb, embryo E15.CNhs11007.437-20E70.00
forelimb, embryo E17.CNhs10598.1517-43C40.00
forelimb, embryo E18.CNhs11008.1520-43B50.00
gonad, embryo E13.CNhs11044.1564-45I60.00
granulocyte macrophage progenitor GMP, biol_rep1.CNhs12206.12123-128C80.00
granulocyte macrophage progenitor GMP, biol_rep2.CNhs12202.12126-128D20.00
granulocyte macrophage progenitor GMP, biol_rep3.CNhs11928.12129-128D50.00
heart, embryo E11.CNhs10586.331-24E90.00
heart, embryo E12.CNhs11015.353-12F50.00
heart, embryo E13.CNhs11013.376-3I90.00
heart, embryo E14.CNhs10597.403-26D40.71
heart, embryo E15.CNhs11017.431-16C80.98
heart, embryo E16.CNhs11021.457-17C60.00
heart, embryo E17.CNhs11025.479-18E50.00
heart, embryo E18.CNhs11030.1283-20G30.00
heart, neonate N00.CNhs11213.639-21E31.52
heart, neonate N03.CNhs11221.1349-25I20.00
heart, neonate N10.CNhs11118.749-24G11.48
heart, neonate N16.CNhs11209.782-15G10.97
heart, neonate N20.CNhs11127.821-26I61.75
heart, neonate N25.CNhs11196.1351-25D31.98
heart, neonate N30.CNhs11202.1390-42D20.67
hippocampus, adult.CNhs10478.13-16E80.00
hippocampus, neonate N00.CNhs11228.627-43G10.00
intestinal mucosa, adult.CNhs10506.860-29I310.57
intestine, adult.CNhs10496.178-9A31.06
intestine, embryo E12.CNhs11019.1251-16I50.00
intestine, embryo E13.CNhs11010.381-16D50.00
intestine, embryo E15.CNhs10602.976-16D80.00
intestine, embryo E16.CNhs10585.463-22H40.20
intestine, embryo E17.CNhs10582.482-18D30.00
intestine, embryo E18.CNhs10526.1289-20F70.38
intestine, neonate N00.CNhs11126.644-26D10.47
intestine, neonate N01.CNhs11192.1322-23E90.16
intestine, neonate N06.CNhs11102.688-20B81.01
intestine, neonate N07.CNhs11095.720-20F20.40
intestine, neonate N10.CNhs11098.755-23A51.36
intestine, neonate N20.CNhs11187.827-18D10.00
intestine, neonate N25.CNhs11121.1352-25E30.65
intestine, neonate N30.CNhs11131.1384-42G11.99
kidney, embryo E14.CNhs10606.411-4I90.00
kidney, embryo E15.CNhs10997.434-16F80.00
kidney, embryo E16.CNhs10584.464-22A50.00
kidney, embryo E17.CNhs11028.483-18I20.00
kidney, embryo E18.CNhs11001.1288-20C70.00
kidney, neonate N00.CNhs11214.646-21G70.00
kidney, neonate N10.CNhs11206.758-6D50.19
kidney, neonate N20.CNhs11113.832-19I10.00
kidney, neonate N25.CNhs11122.1353-25F30.16
kidney, neonate N30.CNhs11203.1385-42H10.25
liver, adult pregnant day01.CNhs10466.508-5B21.19
liver, embryo E12.CNhs10601.355-15F80.00
liver, embryo E13.CNhs10524.378-3H60.00
liver, embryo E14.CNhs10594.409-16E10.00
liver, embryo E15.CNhs10520.433-16D70.00
liver, embryo E16.CNhs10523.462-17F50.24
liver, embryo E17.CNhs10510.481-18A30.00
liver, embryo E18.CNhs10579.499-43G40.00
liver, neonate N00.CNhs11117.641-24F40.32
liver, neonate N03.CNhs11123.1345-25G20.00
liver, neonate N06.CNhs11101.684-20A82.88
liver, neonate N07.CNhs11103.716-20H20.37
liver, neonate N10.CNhs11115.751-24B92.50
liver, neonate N20.CNhs11220.823-25A30.51
liver, neonate N25.CNhs11198.1368-26H10.18
liver, neonate N30.CNhs11106.1382-42D10.00
lung, adult.CNhs10474.28-22B19.42
lung, embryo E12.CNhs10522.354-16G20.00
lung, embryo E14.CNhs10604.404-26F80.00
lung, embryo E15.CNhs11020.432-17C50.17
lung, embryo E16.CNhs10998.458-17B60.00
lung, embryo E17.CNhs10605.480-44A62.85
lung, embryo E18.CNhs10583.1287-20I60.24
lung, neonate N00.CNhs11224.640-42C60.39
lung, neonate N06.CNhs11212.683-20E51.89
lung, neonate N07.CNhs11111.715-19A30.89
lung, neonate N10.CNhs11219.750-23E61.44
lung, neonate N20.CNhs11109.822-18A45.90
lung, neonate N25.CNhs11119.1359-25C74.66
lung, neonate N30.CNhs11133.1394-42H23.18
macrophage, bone marrow derived, pool1.CNhs11457.3560-170A10.00
macrophage, bone marrow derived, pool2.CNhs11532.3632-171A10.00
mammary gland, adult lactating day02.CNhs10480.595-22B63.93
mammary gland, adult pregnant day19.CNhs10476.588-5H23.04
medulla oblongata, adult.CNhs10477.17-12C20.00
medulla oblongata, neonate N30.CNhs11200.1396-42A30.00
mouse fibroblast cell line: CRL-1658 NIH/3T3.CNhs11093.1830-49C70.00
muscle (biceps femoris), neonate N30.CNhs11129.1389-42C20.00
neurospheres - enteric neuron derived, biol_rep1.CNhs13087.11810-124E10.00
neurospheres - enteric neuron derived, biol_rep2.CNhs13088.11811-124E20.00
neurospheres - enteric neuron derived, biol_rep3.CNhs13089.11812-124E30.00
neurospheres - parasympathetic neuron derived, biol_rep1.CNhs13084.11807-124D70.00
neurospheres - parasympathetic neuron derived, biol_rep2.CNhs13085.11808-124D80.00
neurospheres - parasympathetic neuron derived, biol_rep3.CNhs13086.11809-124D90.00
neurospheres - sympathetic neuron derived, biol_rep1.CNhs13081.11804-124D40.00
neurospheres - sympathetic neuron derived, biol_rep2.CNhs13082.11805-124D50.00
neurospheres - sympathetic neuron derived, biol_rep3.CNhs13083.11806-124D60.00
olfactory brain, adult.CNhs10489.18-22I90.00
ovary, adult.CNhs10507.91-2I70.85
ovary, embryo E18.CNhs11040.505-44H70.18
ovary, neonate N00.CNhs11217.1299-22I40.00
oviduct, adult pregnant day01.CNhs10500.988-6G60.82
pancreas, adult.CNhs10486.34-16E42.65
pancreas, embryo E14.CNhs11012.405-44F40.00
pancreas, embryo E15.CNhs11042.1556-45F20.00
pancreas, embryo E16.CNhs11003.460-26E50.00
pancreas, embryo E17.CNhs10599.1558-45G30.30
pancreas, embryo E18.CNhs10580.1535-43I70.31
pancreas, neonate N00.CNhs11105.645-26G90.00
pancreas, neonate N01.CNhs11138.1531-43D70.00
pancreas, neonate N02.CNhs11139.1539-43D80.36
pancreas, neonate N16.CNhs11136.787-43B62.84
pancreas, neonate N25.CNhs11094.1555-45E20.00
pancreas, neonate N30.CNhs11182.1548-44H50.00
pituitary gland, adult.CNhs10493.21-1G80.34
pituitary gland, embryo E12.CNhs11018.346-16E60.00
pituitary gland, embryo E13.CNhs11009.370-44C70.00
pituitary gland, embryo E14.CNhs11037.398-44A50.00
pituitary gland, embryo E15.CNhs10592.427-16B90.00
pituitary gland, embryo E16.CNhs11036.449-43F60.00
pituitary gland, embryo E17.CNhs11039.1265-44F50.00
pituitary gland, neonate N00.CNhs11190.1308-22E90.00
placenta, adult pregnant day10.CNhs10472.539-13I70.00
placenta, adult pregnant day17.CNhs10464.577-18G30.21
prostate, adult.CNhs10470.859-1F80.00
skin, adult.CNhs10492.30-1C31.15
skin, neonate N00.CNhs11124.650-25G40.16
skin, neonate N03.CNhs11215.662-22H30.12
skin, neonate N06.CNhs11097.693-20I50.24
skin, neonate N10.CNhs11108.762-6C40.33
small intestine, neonate N16.CNhs11114.790-21I11.46
spinal cord, adult.CNhs10505.24-13C90.19
spleen, adult.CNhs10465.25-2G215.21
spleen, embryo E16.CNhs11035.461-43C10.41
spleen, embryo E18.CNhs11011.1271-21F21.85
spleen, neonate N10.CNhs11116.752-24D12.83
spleen, neonate N20.CNhs11112.824-19H16.83
spleen, neonate N25.CNhs11099.1354-25G314.18
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep1.CNhs12534.12121-128C60.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep2.CNhs12535.12124-128C90.14
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep3.CNhs12536.12127-128D30.00
stomach, adult.CNhs10503.33-1H60.00
stomach, embryo E12.CNhs10588.356-43E30.00
stomach, embryo E15.CNhs10603.1252-16G80.00
stomach, embryo E16.CNhs11022.459-17D40.22
stomach, embryo E17.CNhs11006.1035-18D50.00
stomach, embryo E18.CNhs10999.1286-20C60.66
stomach, neonate N03.CNhs11193.1340-24B80.13
stomach, neonate N07.CNhs11210.718-18A90.17
stomach, neonate N25.CNhs11104.1355-25E40.26
stomach, neonate N30.CNhs11134.1386-42I10.78
submandibular gland, adult.CNhs10469.59-29C11.86
testis, adult.CNhs10504.57-7G50.00
testis, embryo E13.CNhs11031.389-23F50.00
testis, embryo E15.CNhs11034.443-27C50.00
testis, embryo E16.CNhs11033.470-26G50.00
testis, embryo E17.CNhs11029.486-18I50.52
testis, embryo E18.CNhs11027.503-18G50.00
testis, neonate N00.CNhs11189.1300-22B70.00
testis, neonate N07.CNhs11222.726-26I40.13
testis, neonate N10.CNhs11204.763-44D90.10
testis, neonate N20.CNhs11110.839-18H30.00
testis, neonate N30.CNhs11130.1391-42E20.00
thymus, adult.CNhs10471.38-12B5200.04
thymus, embryo E14.CNhs11041.402-44I422.71
thymus, embryo E15.CNhs11005.430-45I262.76
thymus, embryo E16.CNhs11002.456-26C5104.85
thymus, embryo E17.CNhs10581.478-18C1108.13
thymus, embryo E18.CNhs10595.1273-19G4132.12
thymus, neonate N02.CNhs11181.1541-43F8128.13
thymus, neonate N03.CNhs11137.2104-43C7133.36
thymus, neonate N06.CNhs11197.681-26C4150.54
thymus, neonate N07.CNhs11211.713-19D3145.56
thymus, neonate N10.CNhs11194.748-24E4166.77
thymus, neonate N20.CNhs11186.820-7A2153.30
thymus, neonate N25.CNhs11125.1362-25G7187.13
thymus, neonate N30.CNhs11132.1393-42G2214.47
tongue, adult.CNhs10499.32-1B40.00
trophoblast stem cell line B1 differentiation, day00, biol_rep1.CNhs13526.13297-142H30.00
trophoblast stem cell line R1AB differentiation, day00, biol_rep1.CNhs13481.13283-142F70.00
trophoblast stem cell line Rybp differentiation, day00, biol_rep1.CNhs13519.13290-142G50.00
urinary bladder, adult.CNhs10481.879-12E40.39
uterus, adult pregnant day19.CNhs10497.590-15F50.56
uterus, adult.CNhs10509.92-27E50.18
vagina, adult.CNhs10502.89-27D50.43
vesicular gland, adult.CNhs10491.51-27F82.51
visual cortex - wildtype, neonate N15, donor1.CNhs13031.10235-104A10.00
visual cortex - wildtype, neonate N15, donor2.CNhs13032.10236-104A20.00
visual cortex - wildtype, neonate N15, donor3.CNhs13033.10237-104A30.00
visual cortex - wildtype, neonate N15, donor5.CNhs13820.10349-105D70.00
visual cortex - wildtype, neonate N30, donor1.CNhs13034.10238-104A40.00
visual cortex - wildtype, neonate N30, donor2.CNhs13035.10239-104A50.00
visual cortex - wildtype, neonate N30, donor3.CNhs13036.10240-104A60.00
visual cortex - wildtype, neonate N60-70, donor1.CNhs13037.10241-104A70.00
visual cortex - wildtype, neonate N60-70, donor2.CNhs13038.10242-104A80.00
visual cortex - wildtype, neonate N60-70, donor3.CNhs13039.10243-104A90.00
whole body, embryo E11.CNhs11014.324-5I80.00
whole body, embryo E12.CNhs10587.857-27C90.00
whole body, embryo E13.CNhs10512.372-23H20.00
whole body, embryo E14.5.CNhs10578.420-27D20.73
whole body, embryo E14.CNhs10519.395-14B10.00
whole body, embryo E16.CNhs10514.453-14F20.18
whole body, embryo E17.5, pool1 (internal control).CNhs10479.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs10495.3139-67G50.21
whole body, embryo E17.5, pool1 (internal control).CNhs10511.3139-67G50.96
whole body, embryo E17.5, pool1 (internal control).CNhs10527.3139-67G51.01
whole body, embryo E17.5, pool1 (internal control).CNhs10591.3139-67G51.01
whole body, embryo E17.5, pool1 (internal control).CNhs10607.3139-67G50.75
whole body, embryo E17.5, pool1 (internal control).CNhs10623.3139-67G50.47
whole body, embryo E17.5, pool1 (internal control).CNhs10639.3139-67G50.58
whole body, embryo E17.5, pool1 (internal control).CNhs10655.3139-67G50.46
whole body, embryo E17.5, pool1 (internal control).CNhs10725.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs10749.3139-67G50.23
whole body, embryo E17.5, pool1 (internal control).CNhs10840.3139-67G50.39
whole body, embryo E17.5, pool1 (internal control).CNhs10856.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs10880.3139-67G50.29
whole body, embryo E17.5, pool1 (internal control).CNhs11000.3139-67G50.34
whole body, embryo E17.5, pool1 (internal control).CNhs11024.3139-67G50.18
whole body, embryo E17.5, pool1 (internal control).CNhs11032.3139-67G50.48
whole body, embryo E17.5, pool1 (internal control).CNhs11048.3139-67G50.58
whole body, embryo E17.5, pool1 (internal control).CNhs11072.3139-67G50.28
whole body, embryo E17.5, pool1 (internal control).CNhs11080.3139-67G50.68
whole body, embryo E17.5, pool1 (internal control).CNhs11096.3139-67G50.37
whole body, embryo E17.5, pool1 (internal control).CNhs11120.3139-67G51.58
whole body, embryo E17.5, pool1 (internal control).CNhs11128.3139-67G50.68
whole body, embryo E17.5, pool1 (internal control).CNhs11184.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs11208.3139-67G50.36
whole body, embryo E17.5, pool1 (internal control).CNhs11216.3139-67G50.39
whole body, embryo E17.5, pool1 (internal control).CNhs11246.3139-67G50.41
whole body, embryo E17.5, pool1 (internal control).CNhs11278.3139-67G50.31
whole body, embryo E17.5.CNhs10513.490-9F91.35
whole body, embryo E17.CNhs10517.475-3I50.00
whole body, embryo E18.CNhs10516.493-3B31.87
whole body, neonate N00.CNhs10525.657-19C21.29
whole body, neonate N01.CNhs10576.659-23C60.19
whole body, neonate N06.CNhs10515.692-21D10.88
whole body, neonate N10.CNhs10518.761-6B40.70





  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Cell type
Ontology termp-valuen
mature alpha-beta T cell5.11e-129
alpha-beta T cell5.11e-129
immature T cell5.11e-129
mature T cell5.11e-129
immature alpha-beta T cell5.11e-129
CD4-positive, alpha-beta T cell7.95e-118
T cell2.52e-0911
pro-T cell2.52e-0911
thymocyte2.38e-086
double negative thymocyte2.38e-086
naive T cell2.38e-086
double-positive, alpha-beta thymocyte2.38e-086
CD4-positive, alpha-beta thymocyte2.38e-086
naive thymus-derived CD4-positive, alpha-beta T cell2.38e-086
DN4 thymocyte2.38e-086
DN1 thymic pro-T cell2.38e-086
DN2 thymocyte2.38e-086
DN3 thymocyte2.38e-086
immature single positive thymocyte2.38e-086
early T lineage precursor2.38e-086
mature CD4 single-positive thymocyte2.38e-086
resting double-positive thymocyte2.38e-086
double-positive blast2.38e-086
CD69-positive double-positive thymocyte2.38e-086
CD69-positive, CD4-positive single-positive thymocyte2.38e-086
CD4-positive, CD8-intermediate double-positive thymocyte2.38e-086
CD24-positive, CD4 single-positive thymocyte2.38e-086
lymphoid lineage restricted progenitor cell2.54e-0812
hematopoietic lineage restricted progenitor cell4.51e-0825
lymphocyte1.77e-0713
common lymphoid progenitor1.77e-0713

Uber anatomy
Ontology termp-valuen
hemopoietic organ1.46e-2329
immune organ1.46e-2329
gland of gut4.29e-2124
hemolymphoid system7.64e-2148
immune system7.64e-2148
thymus1.84e-2023
neck1.84e-2023
respiratory system epithelium1.84e-2023
hemolymphoid system gland1.84e-2023
pharyngeal epithelium1.84e-2023
thymic region1.84e-2023
pharyngeal gland1.84e-2023
entire pharyngeal arch endoderm1.84e-2023
thymus primordium1.84e-2023
early pharyngeal endoderm1.84e-2023
hematopoietic system6.53e-2045
blood island6.53e-2045
pharynx2.69e-1924
upper respiratory tract2.69e-1924
chordate pharynx2.69e-1924
pharyngeal arch system2.69e-1924
pharyngeal region of foregut2.69e-1924
mixed endoderm/mesoderm-derived structure5.83e-1835
respiratory system5.50e-1742
respiratory tract2.36e-1641
segment of respiratory tract2.49e-1627
craniocervical region1.45e-1136
digestive system3.37e-10116
digestive tract3.37e-10116
primitive gut3.37e-10116
foregut4.37e-1080
subdivision of digestive tract5.65e-10114
endoderm-derived structure8.45e-10118
endoderm8.45e-10118
presumptive endoderm8.45e-10118
lateral plate mesoderm8.87e-1087
anterior region of body1.45e-0843
endo-epithelium3.27e-0869
gland1.12e-0765
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FFCP_PHASE1:Mm9::chr9:44789884..44789917,%2B&oldid=4265048"