FF:10590-108D5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005256 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008025;DRR008897;DRZ000322;DRZ001707;DRZ011672;DRZ013057 | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000473,UBERON:0000991,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003135,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0003101,UBERON:0000079 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255,CL:0000039,CL:0000586 | |||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:3095,DOID:305,DOID:2994 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0101120 | |fonse_cell_line=FF:0101120 | ||
|fonse_cell_line_closure=FF:0101120 | |fonse_cell_line_closure=FF:0101120 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/testicular%2520germ%2520cell%2520embryonal%2520carcinoma%2520cell%2520line%253aNEC8.CNhs11726.10590-108D5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/testicular%2520germ%2520cell%2520embryonal%2520carcinoma%2520cell%2520line%253aNEC8.CNhs11726.10590-108D5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/testicular%2520germ%2520cell%2520embryonal%2520carcinoma%2520cell%2520line%253aNEC8.CNhs11726.10590-108D5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/testicular%2520germ%2520cell%2520embryonal%2520carcinoma%2520cell%2520line%253aNEC8.CNhs11726.10590-108D5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/testicular%2520germ%2520cell%2520embryonal%2520carcinoma%2520cell%2520line%253aNEC8.CNhs11726.10590-108D5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10590-108D5 | |id=FF:10590-108D5 | ||
|is_a=CL:0000586;;DOID:3095;;EFO:0002091 | |is_a=CL:0000586;;DOID:3095;;EFO:0002091;;FF:0000210;;FF:0100297;;UBERON:0000473;;UBERON:0000922 | ||
|is_obsolete= | |||
|library_id=CNhs11726 | |||
|library_id_phase_based=2:CNhs11726 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10590 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10590 | |||
|name=testicular germ cell embryonal carcinoma cell line:NEC8 | |name=testicular germ cell embryonal carcinoma cell line:NEC8 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11726,LSID819,release009,COMPLETED | |profile_hcage=CNhs11726,LSID819,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,0.0469682146158321,0.427944521663173,0,0,0,0,0,0,0,0,0.0971557677904766,0,0.0971557677904766,0.0971557677904766,0,0.0231777627866204,0,0,0,0,0,0.254906930939673,0,0,0.344983307315655,0,0,0,0,0,0,0,0,0,0,0,0,0.0229177884942808,0.35286482720773,0,0,0,0,0,0,0,0.632245706191485,0,0,0,0,0,-0.0134254145717704,0,0.204651760826038,0,0,0.146220868685182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150951300415549,0,0,0,0,0,0,-0.0746317521732558,0,0.904164138968353,0,0.288403663172634,0.027875044905977,0,0,0,0,0.0784654218973416,0.657944429450432,0,0,0,0.0971557677904766,0,0,0,0,0,0,0.69776730929264,0,0,0,0,0,0,-0.096373593922461,0.440114158646083,0,0,0.0311612205579313,0.19490318360363,0,0,0.239909314465546,0,0.0160842432370369,0 | |||
|repeat_enrich_byname=0,0,0,0,0.0784654218973416,0,0,0,0,0,0,0,0,0,0,0,0.192935283360518,0,0.356263323522005,0.334424754571046,0.0485778838952383,0,-0.00420393838107551,0,0.0971557677904766,0,0.00335378496053746,0.301644122068643,0.176500773135048,0.35286482720773,0.176500773135048,0,-0.128119866952565,0,-0.0504125515893149,0.088250386567524,0,0,0,-0.0186252810838506,0.17246766619611,0,0.224295917831886,0.10815651205768,0,0,0,0,-0.270240669334324,0,-0.023723716003264,0.0144355994670593,-0.12445582031233,-0.152320666301146,-0.0405529942560912,0,0,0,-0.500224467462049,-0.619702057177269,0,0,0.199340824305075,-0.0595673706115195,0,0,1.04150117129734,0,-0.180218915055926,-0.127085802433114,0,0.279500195109296,0.0971557677904766,0,0,0,0,0,0,0,0,0,0,0.0307569197460873,0.150951300415549,0.311905980517371,0.0213293567032764,0.0971557677904766,0,-0.515110149141072,0,0.0844046131640033,0.60553579968806,0.0320121455837822,0.183387173389119,0.429160246200556,0,-0.205233959219437,-0.207388154110363,0.040110720045337,0.211190100755526,0.0961626465271402,-0.189981719549847,0,-0.170069549893826,0.104098281447911,0.236151041407854,0.118042296940993,0.0736942984538765,0.201137244561874,-0.246394413761881,0,0.176500773135048,0,-0.0874809008633025,0,0,0.0226187443259248,0.121799502571065,-0.24028928462287,-0.010270572033999,0.194924664416987,0.359387688490727,-0.0395325284566706,-0.457436452896595,-0.0760751356763216,0.062045972657948,0.0971557677904766,0,-0.0138668005356462,-0.0511412975685108,-0.0859599169350075,0.125540998762085,-0.062707931346577,-0.131112634603251,-0.0683442610773682,0,-0.08693606606065,-0.363572061703746,0.0971557677904766,-0.190773235383648,-0.277133108802769,0,0,-0.0611968876039295,0,0.0971557677904766,0.0893889154660052,0.00545295914412636,0.010708934342734,0.0811896932782969,0.0472810548422692,0.0515715538702275,-0.058316131805328,0,0.262696756708522,0.231669473956303,0,-0.0426109273609652,0,0.248160685273264,-0.25654771030203,0.0870955834266685,-0.245894032256689,0.340230029403794,-0.0305197436034162,-0.355515824542596,0.288403663172634,-0.436075037582496,0.119256799304865,-0.0881268324752877,0,-0.581900628449737,-0.134553029447232,0,0.0538956714236586,0,-0.317552632094193,0,0.225975439287092,0.0351440357032443,0.075367559378613,-0.54043375147324,-0.34213360679021,0.0491933953692143,0,-0.144637487919741,-0.690975169983497,0,0.0804804540357497,-0.0649032739197044,0.967236595123295,-0.150367083334639,-0.2575818078665,-0.0898681799154497,0.100082990922651,0,-0.0689269898278555,0,0,-0.0936007644771407,0.610674259292602,0,0.322877387545516,0.452615720164388,0.192695213016649,0.060529699700114,0,0,0.32153625713057,0.160229328530063,1.53267025254543,0.426593756858945,1.02081475322202e-05,0.323312017470476,-0.00976184558847695,-0.238265651704821,1.20189458125397,0,0,-0.00102699283012761,0,-0.372827019005309,0,0,-0.0990592355645022,0,0,0.0485778838952383,0,0.100686163112521,0,0,0,0,0,0,0,-0.102008215295681,0.190111771957845,0,-0.0580135878931867,0,0,0,0,0.0971557677904766,-0.0576861909932905,0,0,-1.41583006568463,-0.0488430302895715,-0.12301741567642,0.121782247949139,0,0,0,0.48422878761884,0.274703334999794,0,0.169781415571011,0,0,0,0,0.0110147780012653,0,0,0,0,0.0394253107368126,-0.113835699742038,0,0,0,1.01424473683222,0.0971557677904766,0,0,0,0.073262251162028,0,0,0.102127114419745,0,-0.329915575031284,0.0155738882436352,0.0389223539962871,0.332421795347578,-0.55814734468237,-0.405456201680109,0,0,0.21659276530463,0,0,0.0163266258391723,0.0971557677904766,0.301644122068643,0,0.904164138968353,0,0,0,0,0,-0.214314512399756,0.175296478418115,0,0,0,0,0.176500773135048,0,0,0,0,0,-0.424041655215993,-0.0922240566585104,0,0,0,0,0.0908964728157769,0,0,0.478017235348975,0.199318012193098,0,0,0,0,0,0,0,0,0.325485314548702,0.69776730929264,0,0.0485778838952383,0,0,0.204651760826038,0,0,0,0,0.679388270191299,0,0,0.121314724022105,0,0,0,0,0,0,0.0342871476731279,0,0,0,0,0,0,0.316795072610635,0.0469682146158321,0,0.0971557677904766,0,0,0,0,0,-0.0983325250710424,0,0.176500773135048,0,0,-0.0167286059185005,0,0,0,0.655885636168321,0,-0.160318030086386,0,0,0.0971557677904766,0,0,0.0805413657614612,0,0,0.440114158646083,0,0,0,0,0,0,0,0,0,0,0,0,0.0782156307787876,0,-0.28720751597291,-0.028778506586126,0,0,-0.144377966065518,0,0,0,0,0,0,0.145091989575338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.440114158646083,0,0,0,0,0,0.0485778838952383,-0.0127900435896765,0,0,0,0,0,0,0,0.254906930939673,0,0,-0.0920328098005262,0,0,0,0,0,0,0.189963056437808,-0.283220399823148,-0.0141749905061023,0,0,0,0.184584376064803,0,0,-0.0193165302370877,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.796911254211944,0.0231777627866204,0,0,0,0,0,0,0,0,0,0,0,0,0.0485778838952383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0971557677904766,0,0,0,0.0145665206198218,0.176500773135048,0,0.0971557677904766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.397921428825879,0,0,0,-0.213086229657044,0,0,0,0,0,0,0.176500773135048,0,0.35286482720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| |||
|rna_box=108 | |rna_box=108 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=203.9295 | |rna_weight_ug=203.9295 | ||
|sample_age=24 | |sample_age=24 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB0489 | |sample_cell_catalog=RCB0489 | ||
|sample_cell_line=NEC8 | |sample_cell_line=NEC8 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.89081781629673e-297!GO:0043231;intracellular membrane-bound organelle;1.7337660059424e-256!GO:0043227;membrane-bound organelle;3.31981900919433e-256!GO:0043226;organelle;1.76448142351829e-255!GO:0043229;intracellular organelle;4.89889869624788e-255!GO:0044422;organelle part;2.1044355893988e-163!GO:0044446;intracellular organelle part;1.83986658812121e-162!GO:0005737;cytoplasm;1.35148499603363e-161!GO:0005634;nucleus;5.88281657164361e-143!GO:0044237;cellular metabolic process;2.44893879186682e-120!GO:0044238;primary metabolic process;3.09728066972217e-117!GO:0043170;macromolecule metabolic process;4.68092948513036e-117!GO:0032991;macromolecular complex;5.78394208228618e-111!GO:0044444;cytoplasmic part;3.68435934857465e-108!GO:0030529;ribonucleoprotein complex;6.89789271296944e-106!GO:0044428;nuclear part;3.86502810389652e-101!GO:0003723;RNA binding;6.36301501062685e-97!GO:0043233;organelle lumen;1.65554453964429e-87!GO:0031974;membrane-enclosed lumen;1.65554453964429e-87!GO:0043283;biopolymer metabolic process;8.93399208402744e-80!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.62715710371544e-79!GO:0010467;gene expression;2.91095571615251e-77!GO:0005739;mitochondrion;2.9505172027844e-70!GO:0006396;RNA processing;8.91339251834922e-69!GO:0003676;nucleic acid binding;4.56905197126416e-64!GO:0005515;protein binding;1.79203766734665e-58!GO:0006412;translation;2.07662724957169e-58!GO:0005840;ribosome;1.33779428997357e-57!GO:0031981;nuclear lumen;4.09292917228155e-57!GO:0016071;mRNA metabolic process;2.28069611082673e-52!GO:0043234;protein complex;3.5462373591754e-52!GO:0016043;cellular component organization and biogenesis;1.225306330558e-49!GO:0044429;mitochondrial part;2.63006755489916e-49!GO:0003735;structural constituent of ribosome;2.75481289557458e-49!GO:0043228;non-membrane-bound organelle;8.65164268560874e-48!GO:0043232;intracellular non-membrane-bound organelle;8.65164268560874e-48!GO:0008380;RNA splicing;1.23537786832528e-47!GO:0006397;mRNA processing;1.35472443381804e-44!GO:0016070;RNA metabolic process;1.7320074178171e-44!GO:0031967;organelle envelope;2.83199935680514e-44!GO:0033279;ribosomal subunit;4.29228566143724e-44!GO:0031975;envelope;5.57558500344531e-44!GO:0006996;organelle organization and biogenesis;8.9589585143182e-44!GO:0044249;cellular biosynthetic process;2.74916355919047e-43!GO:0006259;DNA metabolic process;4.79080391069337e-43!GO:0033036;macromolecule localization;1.47063106311119e-42!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.68337153695068e-42!GO:0019538;protein metabolic process;3.03598815004892e-42!GO:0031090;organelle membrane;3.38718649601792e-41!GO:0009059;macromolecule biosynthetic process;5.73587519612556e-41!GO:0015031;protein transport;7.97618664101224e-41!GO:0009058;biosynthetic process;1.68164263614978e-40!GO:0065003;macromolecular complex assembly;4.55105183921577e-40!GO:0044260;cellular macromolecule metabolic process;2.49691835965379e-38!GO:0044267;cellular protein metabolic process;4.6013065819923e-38!GO:0022607;cellular component assembly;1.23872210040698e-37!GO:0007049;cell cycle;2.28901459228142e-37!GO:0008104;protein localization;3.33441642114631e-37!GO:0045184;establishment of protein localization;7.11336569274066e-37!GO:0000166;nucleotide binding;2.62732457377186e-36!GO:0005681;spliceosome;6.1003969747993e-36!GO:0005654;nucleoplasm;4.96132345035294e-34!GO:0046907;intracellular transport;3.42601069427938e-33!GO:0005829;cytosol;5.2858933544914e-32!GO:0005694;chromosome;6.16976260232824e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.04799864281321e-31!GO:0022402;cell cycle process;8.12638010638004e-30!GO:0019866;organelle inner membrane;9.83149013595199e-30!GO:0005740;mitochondrial envelope;6.18832528199515e-29!GO:0044427;chromosomal part;2.49663428207103e-27!GO:0031966;mitochondrial membrane;3.62003403175425e-27!GO:0005743;mitochondrial inner membrane;6.72521454920749e-27!GO:0044451;nucleoplasm part;7.76459098417139e-27!GO:0006886;intracellular protein transport;1.75320838602992e-26!GO:0000278;mitotic cell cycle;3.79314443630649e-26!GO:0005730;nucleolus;7.3131865604331e-26!GO:0022403;cell cycle phase;2.05029525586562e-25!GO:0006974;response to DNA damage stimulus;2.70384300535116e-25!GO:0051276;chromosome organization and biogenesis;1.47082220787553e-24!GO:0044445;cytosolic part;2.39351521471717e-24!GO:0016462;pyrophosphatase activity;3.35569209198728e-24!GO:0032553;ribonucleotide binding;3.83498038680131e-24!GO:0032555;purine ribonucleotide binding;3.83498038680131e-24!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.52758447671918e-24!GO:0016817;hydrolase activity, acting on acid anhydrides;6.50850519411271e-24!GO:0017111;nucleoside-triphosphatase activity;9.0730860294176e-24!GO:0031980;mitochondrial lumen;9.69922864878933e-24!GO:0005759;mitochondrial matrix;9.69922864878933e-24!GO:0051301;cell division;9.98222450862481e-24!GO:0022618;protein-RNA complex assembly;1.06660261074958e-23!GO:0006119;oxidative phosphorylation;1.44102964910731e-23!GO:0017076;purine nucleotide binding;1.74465173295465e-23!GO:0000279;M phase;2.47038599768326e-23!GO:0015934;large ribosomal subunit;4.39522369191591e-23!GO:0051649;establishment of cellular localization;5.53045292181987e-23!GO:0000087;M phase of mitotic cell cycle;8.551862567217e-23!GO:0016874;ligase activity;1.12527520141442e-22!GO:0044455;mitochondrial membrane part;1.81937034749465e-22!GO:0007067;mitosis;2.52772684330246e-22!GO:0015935;small ribosomal subunit;3.54313123992072e-22!GO:0051641;cellular localization;5.58724364436632e-22!GO:0005524;ATP binding;2.38097991962302e-21!GO:0032559;adenyl ribonucleotide binding;5.0218076344274e-21!GO:0006281;DNA repair;5.25665387242788e-21!GO:0030554;adenyl nucleotide binding;3.72846062535001e-20!GO:0044265;cellular macromolecule catabolic process;2.16363278230657e-19!GO:0042254;ribosome biogenesis and assembly;2.68155441160565e-19!GO:0004386;helicase activity;3.61699158810099e-19!GO:0008135;translation factor activity, nucleic acid binding;3.61699158810099e-19!GO:0006512;ubiquitin cycle;1.09446454819795e-18!GO:0006457;protein folding;1.16567696867034e-18!GO:0016887;ATPase activity;2.56443219242846e-18!GO:0006325;establishment and/or maintenance of chromatin architecture;6.65520132901089e-18!GO:0005746;mitochondrial respiratory chain;1.27297583693956e-17!GO:0044453;nuclear membrane part;1.43019316890461e-17!GO:0000398;nuclear mRNA splicing, via spliceosome;1.4394775042354e-17!GO:0000375;RNA splicing, via transesterification reactions;1.4394775042354e-17!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.4394775042354e-17!GO:0031965;nuclear membrane;1.50073714109148e-17!GO:0042623;ATPase activity, coupled;3.30619618418717e-17!GO:0006323;DNA packaging;3.57133781570821e-17!GO:0005761;mitochondrial ribosome;6.6479023752959e-17!GO:0000313;organellar ribosome;6.6479023752959e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.88178896224104e-17!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.11507931504806e-16!GO:0009719;response to endogenous stimulus;1.13602063735418e-16!GO:0005635;nuclear envelope;3.64535842203953e-16!GO:0050136;NADH dehydrogenase (quinone) activity;4.54152078077201e-16!GO:0003954;NADH dehydrogenase activity;4.54152078077201e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.54152078077201e-16!GO:0006511;ubiquitin-dependent protein catabolic process;4.85043219744047e-16!GO:0006403;RNA localization;5.1081097410636e-16!GO:0005643;nuclear pore;5.2076416348804e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;6.95765437519931e-16!GO:0009057;macromolecule catabolic process;7.38860035160366e-16!GO:0050657;nucleic acid transport;1.18403837301953e-15!GO:0051236;establishment of RNA localization;1.18403837301953e-15!GO:0050658;RNA transport;1.18403837301953e-15!GO:0043285;biopolymer catabolic process;1.31357042025322e-15!GO:0019941;modification-dependent protein catabolic process;1.36883773141489e-15!GO:0043632;modification-dependent macromolecule catabolic process;1.36883773141489e-15!GO:0008026;ATP-dependent helicase activity;1.53035246872662e-15!GO:0044257;cellular protein catabolic process;2.15824129469924e-15!GO:0006260;DNA replication;2.40013223057732e-15!GO:0065004;protein-DNA complex assembly;2.61375216506859e-15!GO:0006399;tRNA metabolic process;2.99052495061957e-15!GO:0006413;translational initiation;6.1290246397983e-15!GO:0012505;endomembrane system;8.79513450595135e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.14748314075442e-14!GO:0006446;regulation of translational initiation;1.24483494149768e-14!GO:0006605;protein targeting;1.66065975427032e-14!GO:0042775;organelle ATP synthesis coupled electron transport;1.74791678963197e-14!GO:0042773;ATP synthesis coupled electron transport;1.74791678963197e-14!GO:0000502;proteasome complex (sensu Eukaryota);2.23549289452976e-14!GO:0044248;cellular catabolic process;3.00949963120149e-14!GO:0016604;nuclear body;3.38597551155728e-14!GO:0051082;unfolded protein binding;3.53757616783703e-14!GO:0008134;transcription factor binding;5.11864582997963e-14!GO:0000785;chromatin;5.48867825114103e-14!GO:0030964;NADH dehydrogenase complex (quinone);5.57001562453314e-14!GO:0045271;respiratory chain complex I;5.57001562453314e-14!GO:0005747;mitochondrial respiratory chain complex I;5.57001562453314e-14!GO:0048770;pigment granule;7.71356134546202e-14!GO:0042470;melanosome;7.71356134546202e-14!GO:0006364;rRNA processing;1.39400447643101e-13!GO:0051028;mRNA transport;1.39400447643101e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.83948104823565e-13!GO:0019222;regulation of metabolic process;2.28203130830595e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.70753253758773e-13!GO:0065002;intracellular protein transport across a membrane;3.057881893515e-13!GO:0016072;rRNA metabolic process;3.88087886895413e-13!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.47048919568178e-13!GO:0051186;cofactor metabolic process;4.82109686563315e-13!GO:0003743;translation initiation factor activity;6.23548192498065e-13!GO:0050794;regulation of cellular process;7.7871072884404e-13!GO:0046930;pore complex;1.12271791654793e-12!GO:0016607;nuclear speck;1.96090978979525e-12!GO:0006913;nucleocytoplasmic transport;2.14630190356584e-12!GO:0006333;chromatin assembly or disassembly;2.49923413348507e-12!GO:0030163;protein catabolic process;3.12105760962871e-12!GO:0043412;biopolymer modification;4.20621357020082e-12!GO:0008565;protein transporter activity;5.29266749908221e-12!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.26475928721475e-12!GO:0004812;aminoacyl-tRNA ligase activity;6.26475928721475e-12!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.26475928721475e-12!GO:0051169;nuclear transport;6.99448951388882e-12!GO:0015630;microtubule cytoskeleton;1.47408154887912e-11!GO:0043038;amino acid activation;1.868412078416e-11!GO:0006418;tRNA aminoacylation for protein translation;1.868412078416e-11!GO:0043039;tRNA aminoacylation;1.868412078416e-11!GO:0051726;regulation of cell cycle;1.89967103872095e-11!GO:0000074;regulation of progression through cell cycle;2.58547275619217e-11!GO:0006732;coenzyme metabolic process;2.77103543540181e-11!GO:0031323;regulation of cellular metabolic process;3.01542313368964e-11!GO:0006334;nucleosome assembly;3.98704886797892e-11!GO:0006350;transcription;4.18072472146827e-11!GO:0006366;transcription from RNA polymerase II promoter;5.99075596553187e-11!GO:0030532;small nuclear ribonucleoprotein complex;8.97124929997093e-11!GO:0031497;chromatin assembly;9.67766307987462e-11!GO:0048193;Golgi vesicle transport;1.68593473097516e-10!GO:0009055;electron carrier activity;5.36835448879912e-10!GO:0010468;regulation of gene expression;5.54107718113499e-10!GO:0005794;Golgi apparatus;7.66217604463227e-10!GO:0003724;RNA helicase activity;1.03613012393829e-09!GO:0006464;protein modification process;1.16920572333827e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.23091133897234e-09!GO:0005819;spindle;1.74484159097307e-09!GO:0009259;ribonucleotide metabolic process;1.7547815911081e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.76157798014478e-09!GO:0043687;post-translational protein modification;2.32699878474699e-09!GO:0000775;chromosome, pericentric region;2.5232629064253e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.58599208622994e-09!GO:0017038;protein import;3.59486149953772e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.62366491582225e-09!GO:0032774;RNA biosynthetic process;4.11765566168104e-09!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.65624294433448e-09!GO:0006261;DNA-dependent DNA replication;5.38290547248222e-09!GO:0006163;purine nucleotide metabolic process;5.38981498991237e-09!GO:0043566;structure-specific DNA binding;5.91498938686801e-09!GO:0016192;vesicle-mediated transport;5.94075422807394e-09!GO:0006351;transcription, DNA-dependent;6.02779101696494e-09!GO:0016568;chromatin modification;6.50751737313574e-09!GO:0009260;ribonucleotide biosynthetic process;7.29038646698773e-09!GO:0008639;small protein conjugating enzyme activity;1.0912642368985e-08!GO:0006164;purine nucleotide biosynthetic process;1.17742381624156e-08!GO:0006461;protein complex assembly;1.3735942081375e-08!GO:0015078;hydrogen ion transmembrane transporter activity;1.38342321368334e-08!GO:0005783;endoplasmic reticulum;1.64844005325875e-08!GO:0003697;single-stranded DNA binding;1.77940980504174e-08!GO:0004842;ubiquitin-protein ligase activity;1.8855742308158e-08!GO:0015986;ATP synthesis coupled proton transport;1.96343759002207e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.96343759002207e-08!GO:0009150;purine ribonucleotide metabolic process;2.06971180926926e-08!GO:0003712;transcription cofactor activity;2.17670768542202e-08!GO:0016779;nucleotidyltransferase activity;2.31635192218766e-08!GO:0003677;DNA binding;2.48631056649443e-08!GO:0000245;spliceosome assembly;2.6942190190204e-08!GO:0019787;small conjugating protein ligase activity;3.2402480627368e-08!GO:0050789;regulation of biological process;3.70231796429169e-08!GO:0009152;purine ribonucleotide biosynthetic process;4.4936469883559e-08!GO:0009060;aerobic respiration;5.35916599407852e-08!GO:0008186;RNA-dependent ATPase activity;5.736073751912e-08!GO:0032446;protein modification by small protein conjugation;7.74891718009291e-08!GO:0051188;cofactor biosynthetic process;8.887774432805e-08!GO:0007051;spindle organization and biogenesis;9.72573713272151e-08!GO:0005667;transcription factor complex;1.20550788750264e-07!GO:0007059;chromosome segregation;1.35518108054786e-07!GO:0005813;centrosome;1.42493102666608e-07!GO:0019829;cation-transporting ATPase activity;1.72390807547123e-07!GO:0004004;ATP-dependent RNA helicase activity;1.95968894967438e-07!GO:0016567;protein ubiquitination;2.09989020937535e-07!GO:0005815;microtubule organizing center;2.15999523278256e-07!GO:0006754;ATP biosynthetic process;2.23409331998671e-07!GO:0006753;nucleoside phosphate metabolic process;2.23409331998671e-07!GO:0045449;regulation of transcription;2.5361922246133e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.54281167508106e-07!GO:0044432;endoplasmic reticulum part;2.73235569534551e-07!GO:0008094;DNA-dependent ATPase activity;2.85281421701507e-07!GO:0003899;DNA-directed RNA polymerase activity;3.64322659656213e-07!GO:0009142;nucleoside triphosphate biosynthetic process;3.80292532396232e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.80292532396232e-07!GO:0045259;proton-transporting ATP synthase complex;4.03717918033276e-07!GO:0016469;proton-transporting two-sector ATPase complex;4.82947534253425e-07!GO:0016740;transferase activity;4.84404859597423e-07!GO:0046034;ATP metabolic process;4.93694742556901e-07!GO:0009199;ribonucleoside triphosphate metabolic process;4.94124580031557e-07!GO:0045333;cellular respiration;6.12996546228825e-07!GO:0012501;programmed cell death;6.34089167358447e-07!GO:0009108;coenzyme biosynthetic process;6.71254247250963e-07!GO:0006915;apoptosis;7.00764767077953e-07!GO:0043623;cellular protein complex assembly;8.4006026482542e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;8.55907809996795e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;8.55907809996795e-07!GO:0009141;nucleoside triphosphate metabolic process;9.65437029120909e-07!GO:0006752;group transfer coenzyme metabolic process;9.88796636365366e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.04999229113024e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.04999229113024e-06!GO:0006355;regulation of transcription, DNA-dependent;1.12723313530397e-06!GO:0006099;tricarboxylic acid cycle;1.2073549223223e-06!GO:0046356;acetyl-CoA catabolic process;1.2073549223223e-06!GO:0009056;catabolic process;1.30189407893083e-06!GO:0000228;nuclear chromosome;1.37672311755765e-06!GO:0016881;acid-amino acid ligase activity;1.42234877807935e-06!GO:0005793;ER-Golgi intermediate compartment;1.46597749320217e-06!GO:0006084;acetyl-CoA metabolic process;1.79325024778368e-06!GO:0051170;nuclear import;1.80211371468891e-06!GO:0007005;mitochondrion organization and biogenesis;1.84450111473619e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.85197635041807e-06!GO:0000786;nucleosome;1.97305703460388e-06!GO:0051168;nuclear export;2.21696153261512e-06!GO:0005657;replication fork;2.27659706731744e-06!GO:0000314;organellar small ribosomal subunit;2.33811136321413e-06!GO:0005763;mitochondrial small ribosomal subunit;2.33811136321413e-06!GO:0006888;ER to Golgi vesicle-mediated transport;2.59868852504089e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.64089707403347e-06!GO:0009109;coenzyme catabolic process;2.7828670792178e-06!GO:0048475;coated membrane;3.2431253912164e-06!GO:0030117;membrane coat;3.2431253912164e-06!GO:0000075;cell cycle checkpoint;3.50880269698233e-06!GO:0051329;interphase of mitotic cell cycle;4.25693398844599e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;5.98850526280228e-06!GO:0051325;interphase;6.16277680199714e-06!GO:0016363;nuclear matrix;6.20616662451504e-06!GO:0006606;protein import into nucleus;6.5290532612278e-06!GO:0044452;nucleolar part;7.46911085526111e-06!GO:0051246;regulation of protein metabolic process;7.66044555159652e-06!GO:0016741;transferase activity, transferring one-carbon groups;8.05197424774458e-06!GO:0005762;mitochondrial large ribosomal subunit;8.43022018995678e-06!GO:0000315;organellar large ribosomal subunit;8.43022018995678e-06!GO:0003729;mRNA binding;9.00647637309229e-06!GO:0008219;cell death;9.74724300829785e-06!GO:0016265;death;9.74724300829785e-06!GO:0044454;nuclear chromosome part;9.9725390593806e-06!GO:0008168;methyltransferase activity;9.97813799394148e-06!GO:0006793;phosphorus metabolic process;1.14710657145146e-05!GO:0006796;phosphate metabolic process;1.14710657145146e-05!GO:0008033;tRNA processing;1.25331900609504e-05!GO:0006402;mRNA catabolic process;1.47862004281266e-05!GO:0009117;nucleotide metabolic process;1.54634777068956e-05!GO:0000151;ubiquitin ligase complex;1.54826959286487e-05!GO:0003690;double-stranded DNA binding;1.54826959286487e-05!GO:0005874;microtubule;1.6802454792248e-05!GO:0051187;cofactor catabolic process;1.75146068854337e-05!GO:0030120;vesicle coat;1.85569752884059e-05!GO:0030662;coated vesicle membrane;1.85569752884059e-05!GO:0016853;isomerase activity;2.02662707500039e-05!GO:0000793;condensed chromosome;2.02826057339423e-05!GO:0031988;membrane-bound vesicle;2.05203262040368e-05!GO:0016023;cytoplasmic membrane-bound vesicle;2.12897545419239e-05!GO:0003678;DNA helicase activity;2.69282985310101e-05!GO:0005839;proteasome core complex (sensu Eukaryota);2.87449262116452e-05!GO:0016787;hydrolase activity;3.05546112108378e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.1493440246362e-05!GO:0005525;GTP binding;3.1493440246362e-05!GO:0043021;ribonucleoprotein binding;3.82109781735945e-05!GO:0000059;protein import into nucleus, docking;3.94005550150014e-05!GO:0000776;kinetochore;4.04250938310558e-05!GO:0005669;transcription factor TFIID complex;4.25529951313637e-05!GO:0007017;microtubule-based process;4.27092441552988e-05!GO:0005789;endoplasmic reticulum membrane;4.55433645497858e-05!GO:0006613;cotranslational protein targeting to membrane;5.74772923430246e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;5.74772923430246e-05!GO:0016859;cis-trans isomerase activity;5.80301002276613e-05!GO:0006302;double-strand break repair;5.80582266649287e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;6.69961773906052e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;6.82167683962095e-05!GO:0006414;translational elongation;6.9262567984069e-05!GO:0000226;microtubule cytoskeleton organization and biogenesis;7.07856018218133e-05!GO:0006401;RNA catabolic process;7.27871176765523e-05!GO:0051052;regulation of DNA metabolic process;7.61136242863594e-05!GO:0008270;zinc ion binding;8.68417349039206e-05!GO:0004298;threonine endopeptidase activity;8.89490835021876e-05!GO:0031982;vesicle;0.000118041188979728!GO:0031324;negative regulation of cellular metabolic process;0.000132748799048996!GO:0003924;GTPase activity;0.00013732932662219!GO:0016310;phosphorylation;0.000141114900171723!GO:0031410;cytoplasmic vesicle;0.00014148288659104!GO:0006383;transcription from RNA polymerase III promoter;0.000149961773556828!GO:0000049;tRNA binding;0.000158691466748675!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000159888500550255!GO:0005768;endosome;0.000163395092381871!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000165226726314477!GO:0044431;Golgi apparatus part;0.000165568283177865!GO:0006818;hydrogen transport;0.000171488121141798!GO:0007052;mitotic spindle organization and biogenesis;0.000199833776354579!GO:0015992;proton transport;0.000215262928282483!GO:0051427;hormone receptor binding;0.000221822815510463!GO:0005798;Golgi-associated vesicle;0.000232924069915604!GO:0003713;transcription coactivator activity;0.000244630400194364!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000248255772737444!GO:0003682;chromatin binding;0.000249810646055442!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000253312400124136!GO:0043681;protein import into mitochondrion;0.000253312400124136!GO:0032508;DNA duplex unwinding;0.000273943402366472!GO:0032392;DNA geometric change;0.000273943402366472!GO:0006405;RNA export from nucleus;0.000291137011434016!GO:0015631;tubulin binding;0.000294650457750229!GO:0006352;transcription initiation;0.000304597791435064!GO:0032561;guanyl ribonucleotide binding;0.000305434331959478!GO:0019001;guanyl nucleotide binding;0.000305434331959478!GO:0048471;perinuclear region of cytoplasm;0.000311791169652046!GO:0007088;regulation of mitosis;0.000321602239349538!GO:0005684;U2-dependent spliceosome;0.000322952551908991!GO:0007010;cytoskeleton organization and biogenesis;0.000330483390102711!GO:0042981;regulation of apoptosis;0.000332840423783761!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000339920887271351!GO:0007093;mitotic cell cycle checkpoint;0.000352272908029537!GO:0043069;negative regulation of programmed cell death;0.000355786072471111!GO:0005769;early endosome;0.000362872088456331!GO:0045454;cell redox homeostasis;0.000419476360204656!GO:0015980;energy derivation by oxidation of organic compounds;0.000428322662161436!GO:0043066;negative regulation of apoptosis;0.00044510865839211!GO:0035257;nuclear hormone receptor binding;0.00044663664957566!GO:0043067;regulation of programmed cell death;0.000455172815725484!GO:0051087;chaperone binding;0.000461535773635449!GO:0006520;amino acid metabolic process;0.000464815712914956!GO:0006338;chromatin remodeling;0.000482077265112568!GO:0005637;nuclear inner membrane;0.000504604975044259!GO:0065007;biological regulation;0.000507337757317785!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.000518969376081737!GO:0015002;heme-copper terminal oxidase activity;0.000518969376081737!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.000518969376081737!GO:0004129;cytochrome-c oxidase activity;0.000518969376081737!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000521991549169622!GO:0030867;rough endoplasmic reticulum membrane;0.00053112718345169!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000563357560514624!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.000563357560514624!GO:0016564;transcription repressor activity;0.000563473342296021!GO:0006310;DNA recombination;0.000563473342296021!GO:0006268;DNA unwinding during replication;0.000638383686615844!GO:0031072;heat shock protein binding;0.000655739865965493!GO:0005876;spindle microtubule;0.000672618995238723!GO:0009892;negative regulation of metabolic process;0.000688962696349149!GO:0003711;transcription elongation regulator activity;0.000710977281835874!GO:0007006;mitochondrial membrane organization and biogenesis;0.000797934835990244!GO:0016251;general RNA polymerase II transcription factor activity;0.000821904651115152!GO:0030880;RNA polymerase complex;0.000838497614200596!GO:0000922;spindle pole;0.000843860644238131!GO:0006289;nucleotide-excision repair;0.00084792408580033!GO:0044440;endosomal part;0.000856653703046377!GO:0010008;endosome membrane;0.000856653703046377!GO:0006612;protein targeting to membrane;0.000881043466060831!GO:0000139;Golgi membrane;0.000929757745062273!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000933214287158009!GO:0051920;peroxiredoxin activity;0.000964265897696808!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.000964265897696808!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.000964265897696808!GO:0016563;transcription activator activity;0.000979032386882832!GO:0031252;leading edge;0.00108732359974993!GO:0006839;mitochondrial transport;0.00110771669538875!GO:0008654;phospholipid biosynthetic process;0.00110771669538875!GO:0045786;negative regulation of progression through cell cycle;0.00115359093731126!GO:0007264;small GTPase mediated signal transduction;0.00117864674100751!GO:0009112;nucleobase metabolic process;0.00119759867530049!GO:0005770;late endosome;0.00120042753229647!GO:0006144;purine base metabolic process;0.0012110094147068!GO:0004527;exonuclease activity;0.00122573714770943!GO:0048487;beta-tubulin binding;0.00125807034591623!GO:0008652;amino acid biosynthetic process;0.00128577036948599!GO:0003684;damaged DNA binding;0.00132718571350149!GO:0005788;endoplasmic reticulum lumen;0.00140834965253271!GO:0032259;methylation;0.0014222967545163!GO:0006007;glucose catabolic process;0.00142412974451124!GO:0000725;recombinational repair;0.00146290327573046!GO:0000724;double-strand break repair via homologous recombination;0.00146290327573046!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00148592353852458!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00148592353852458!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00148592353852458!GO:0048523;negative regulation of cellular process;0.0015521717394876!GO:0003714;transcription corepressor activity;0.00158129146249624!GO:0016481;negative regulation of transcription;0.00164461736540702!GO:0046914;transition metal ion binding;0.00169639834171323!GO:0006916;anti-apoptosis;0.00183114230941039!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00184818530852089!GO:0000428;DNA-directed RNA polymerase complex;0.00184818530852089!GO:0006091;generation of precursor metabolites and energy;0.00197140401559795!GO:0009165;nucleotide biosynthetic process;0.00197140401559795!GO:0006626;protein targeting to mitochondrion;0.0019942563528087!GO:0006275;regulation of DNA replication;0.00202521661266388!GO:0006284;base-excision repair;0.00222120872087032!GO:0043414;biopolymer methylation;0.00222774380865954!GO:0022890;inorganic cation transmembrane transporter activity;0.0023352794510089!GO:0051252;regulation of RNA metabolic process;0.0023352794510089!GO:0044262;cellular carbohydrate metabolic process;0.00250268767109338!GO:0003746;translation elongation factor activity;0.00250280027654029!GO:0005741;mitochondrial outer membrane;0.0025604477396892!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00272595001198101!GO:0015399;primary active transmembrane transporter activity;0.00272595001198101!GO:0006730;one-carbon compound metabolic process;0.00278430338939103!GO:0016272;prefoldin complex;0.00279307535220419!GO:0005885;Arp2/3 protein complex;0.00279307535220419!GO:0008250;oligosaccharyl transferase complex;0.00281456658401641!GO:0019899;enzyme binding;0.00299519273431826!GO:0005048;signal sequence binding;0.00302959074699931!GO:0019867;outer membrane;0.0030311614243335!GO:0006417;regulation of translation;0.00303494565941398!GO:0051789;response to protein stimulus;0.00305221649376888!GO:0006986;response to unfolded protein;0.00305221649376888!GO:0031968;organelle outer membrane;0.00308436714647825!GO:0043596;nuclear replication fork;0.00318039461687621!GO:0004674;protein serine/threonine kinase activity;0.00318074431358866!GO:0043284;biopolymer biosynthetic process;0.00320157439061736!GO:0005791;rough endoplasmic reticulum;0.00322408960224838!GO:0032200;telomere organization and biogenesis;0.00323827963873537!GO:0000723;telomere maintenance;0.00323827963873537!GO:0006595;polyamine metabolic process;0.00339934512212231!GO:0004003;ATP-dependent DNA helicase activity;0.00343208599995121!GO:0009451;RNA modification;0.0037237935233777!GO:0006378;mRNA polyadenylation;0.00377452558945498!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00383970163202848!GO:0030118;clathrin coat;0.0038475250984576!GO:0046474;glycerophospholipid biosynthetic process;0.00411569784056687!GO:0045947;negative regulation of translational initiation;0.00419074405499868!GO:0006611;protein export from nucleus;0.00422961044766706!GO:0031124;mRNA 3'-end processing;0.00441855871748563!GO:0008139;nuclear localization sequence binding;0.00452986816745091!GO:0035258;steroid hormone receptor binding;0.00456999035928693!GO:0009116;nucleoside metabolic process;0.00494314953885811!GO:0006541;glutamine metabolic process;0.00497885966067321!GO:0040029;regulation of gene expression, epigenetic;0.00499567297610939!GO:0000792;heterochromatin;0.0050408669729352!GO:0003702;RNA polymerase II transcription factor activity;0.00508836904328424!GO:0030119;AP-type membrane coat adaptor complex;0.00530978728461927!GO:0050662;coenzyme binding;0.00538863171607458!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00538863171607458!GO:0000910;cytokinesis;0.00540540640727593!GO:0019843;rRNA binding;0.00540694771817021!GO:0030027;lamellipodium;0.00543276637481232!GO:0030131;clathrin adaptor complex;0.00571489210865505!GO:0006376;mRNA splice site selection;0.00584328438787179!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00584328438787179!GO:0043624;cellular protein complex disassembly;0.00593839606201399!GO:0048500;signal recognition particle;0.00605961886367051!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00615793835158754!GO:0000339;RNA cap binding;0.00616648626066513!GO:0006891;intra-Golgi vesicle-mediated transport;0.00624471517940837!GO:0042393;histone binding;0.00642531823118714!GO:0030663;COPI coated vesicle membrane;0.00676611978276581!GO:0030126;COPI vesicle coat;0.00676611978276581!GO:0032984;macromolecular complex disassembly;0.00676770578124593!GO:0004576;oligosaccharyl transferase activity;0.00714574815708844!GO:0016791;phosphoric monoester hydrolase activity;0.00730588647693043!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00768527131191885!GO:0051053;negative regulation of DNA metabolic process;0.00789659779901468!GO:0045892;negative regulation of transcription, DNA-dependent;0.00789659779901468!GO:0022411;cellular component disassembly;0.00804862121896459!GO:0000178;exosome (RNase complex);0.00808686987859495!GO:0005832;chaperonin-containing T-complex;0.0082462938479211!GO:0019783;small conjugating protein-specific protease activity;0.00837521338396792!GO:0005758;mitochondrial intermembrane space;0.00856628189973264!GO:0005773;vacuole;0.00857790053223479!GO:0005905;coated pit;0.00862543614299661!GO:0008022;protein C-terminus binding;0.0086941036890934!GO:0043022;ribosome binding;0.00883396900255206!GO:0008629;induction of apoptosis by intracellular signals;0.00905021276297377!GO:0051539;4 iron, 4 sulfur cluster binding;0.00911219705481515!GO:0046483;heterocycle metabolic process;0.00912145755557678!GO:0048519;negative regulation of biological process;0.00932945910456846!GO:0031570;DNA integrity checkpoint;0.00933029137117359!GO:0000209;protein polyubiquitination;0.00940649008263673!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00946753030835234!GO:0031123;RNA 3'-end processing;0.00963775371353153!GO:0030137;COPI-coated vesicle;0.00983971606714261!GO:0008180;signalosome;0.00992421944537709!GO:0046489;phosphoinositide biosynthetic process;0.010017963991985!GO:0019752;carboxylic acid metabolic process;0.0101604708432522!GO:0008276;protein methyltransferase activity;0.0102364569824397!GO:0008017;microtubule binding;0.0102728458213516!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0102878559245501!GO:0004518;nuclease activity;0.010381391894348!GO:0009303;rRNA transcription;0.0104199816647249!GO:0008312;7S RNA binding;0.0105114142816966!GO:0008234;cysteine-type peptidase activity;0.0109463844688995!GO:0031577;spindle checkpoint;0.0113913852225691!GO:0043631;RNA polyadenylation;0.0113964476975735!GO:0009081;branched chain family amino acid metabolic process;0.0113990329912749!GO:0000096;sulfur amino acid metabolic process;0.0114054369444907!GO:0006400;tRNA modification;0.0115077207525717!GO:0031970;organelle envelope lumen;0.0115707363347776!GO:0046365;monosaccharide catabolic process;0.0116854199340857!GO:0016584;nucleosome positioning;0.0119882087816953!GO:0030133;transport vesicle;0.0120839448993725!GO:0043241;protein complex disassembly;0.0125416682529164!GO:0042770;DNA damage response, signal transduction;0.0125416682529164!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0125759201138488!GO:0030132;clathrin coat of coated pit;0.0127272153014985!GO:0006270;DNA replication initiation;0.0128921881861892!GO:0006082;organic acid metabolic process;0.0130224312848465!GO:0004843;ubiquitin-specific protease activity;0.013027699304148!GO:0007021;tubulin folding;0.013220161454581!GO:0048037;cofactor binding;0.0132971126179963!GO:0019318;hexose metabolic process;0.0134680802676146!GO:0030176;integral to endoplasmic reticulum membrane;0.0135383088250628!GO:0005996;monosaccharide metabolic process;0.0137040605180498!GO:0001824;blastocyst development;0.0141211754162283!GO:0031901;early endosome membrane;0.014333467208962!GO:0018196;peptidyl-asparagine modification;0.0143499724535458!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0143499724535458!GO:0000819;sister chromatid segregation;0.0147386957173227!GO:0030134;ER to Golgi transport vesicle;0.0148550177011336!GO:0043601;nuclear replisome;0.0152628701012257!GO:0030894;replisome;0.0152628701012257!GO:0065009;regulation of a molecular function;0.0154735866517333!GO:0016790;thiolester hydrolase activity;0.0156335823074031!GO:0043492;ATPase activity, coupled to movement of substances;0.0156335823074031!GO:0000790;nuclear chromatin;0.0162480614012093!GO:0000070;mitotic sister chromatid segregation;0.016348986486264!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0165633881449359!GO:0045047;protein targeting to ER;0.0165633881449359!GO:0043488;regulation of mRNA stability;0.0165910104724204!GO:0043487;regulation of RNA stability;0.0165910104724204!GO:0050811;GABA receptor binding;0.0166323005937533!GO:0030658;transport vesicle membrane;0.0166323005937533!GO:0006406;mRNA export from nucleus;0.0171152992309136!GO:0016197;endosome transport;0.0171380490444161!GO:0030496;midbody;0.017597098276098!GO:0000123;histone acetyltransferase complex;0.0176416587136821!GO:0006096;glycolysis;0.0176879672618462!GO:0019320;hexose catabolic process;0.0178231240095731!GO:0045045;secretory pathway;0.0178231240095731!GO:0016407;acetyltransferase activity;0.0178861140816362!GO:0005732;small nucleolar ribonucleoprotein complex;0.0179786677118798!GO:0016491;oxidoreductase activity;0.0180073638050777!GO:0004221;ubiquitin thiolesterase activity;0.0182254856479678!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0182593215121067!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0183371059316265!GO:0044450;microtubule organizing center part;0.0184360622728387!GO:0000082;G1/S transition of mitotic cell cycle;0.018579260421608!GO:0051321;meiotic cell cycle;0.018579260421608!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0186185500776664!GO:0005652;nuclear lamina;0.0188083453924436!GO:0051540;metal cluster binding;0.0197728521665857!GO:0051536;iron-sulfur cluster binding;0.0197728521665857!GO:0006740;NADPH regeneration;0.0200341007184068!GO:0006098;pentose-phosphate shunt;0.0200341007184068!GO:0033116;ER-Golgi intermediate compartment membrane;0.0201178896592379!GO:0009124;nucleoside monophosphate biosynthetic process;0.0201458176887021!GO:0009123;nucleoside monophosphate metabolic process;0.0201458176887021!GO:0009161;ribonucleoside monophosphate metabolic process;0.0211383097026228!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0211383097026228!GO:0004722;protein serine/threonine phosphatase activity;0.0213739818265721!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0214576003324895!GO:0046164;alcohol catabolic process;0.0217282129023492!GO:0005850;eukaryotic translation initiation factor 2 complex;0.021956494003709!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0228132273691678!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0229957591360969!GO:0007004;telomere maintenance via telomerase;0.0230154036589756!GO:0008097;5S rRNA binding;0.0232513175688561!GO:0006306;DNA methylation;0.0235140387507344!GO:0006305;DNA alkylation;0.0235140387507344!GO:0035267;NuA4 histone acetyltransferase complex;0.0241017326670859!GO:0006360;transcription from RNA polymerase I promoter;0.0250844945904074!GO:0050178;phenylpyruvate tautomerase activity;0.0251480927558636!GO:0004532;exoribonuclease activity;0.0253156076050033!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0253156076050033!GO:0047485;protein N-terminus binding;0.0253660022365694!GO:0000794;condensed nuclear chromosome;0.0259281305788275!GO:0003756;protein disulfide isomerase activity;0.0259661787369806!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0259661787369806!GO:0005083;small GTPase regulator activity;0.0262971836626684!GO:0042026;protein refolding;0.0267855036172456!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0269161694750972!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0275148222059045!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0278006355700372!GO:0030521;androgen receptor signaling pathway;0.027837916178653!GO:0005663;DNA replication factor C complex;0.0278979591027884!GO:0004402;histone acetyltransferase activity;0.0285223062553938!GO:0004468;lysine N-acetyltransferase activity;0.0285223062553938!GO:0030127;COPII vesicle coat;0.0285431160044095!GO:0012507;ER to Golgi transport vesicle membrane;0.0285431160044095!GO:0008156;negative regulation of DNA replication;0.0285680496967808!GO:0043189;H4/H2A histone acetyltransferase complex;0.0287327062195548!GO:0030913;paranodal junction assembly;0.0292608969150375!GO:0032288;myelin formation;0.0292608969150375!GO:0030433;ER-associated protein catabolic process;0.0292915994059332!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0292915994059332!GO:0009066;aspartate family amino acid metabolic process;0.0295000711503002!GO:0030660;Golgi-associated vesicle membrane;0.0296263965614377!GO:0004680;casein kinase activity;0.0297169700151584!GO:0031326;regulation of cellular biosynthetic process;0.0298058391227376!GO:0000152;nuclear ubiquitin ligase complex;0.0301137392748735!GO:0000086;G2/M transition of mitotic cell cycle;0.0311161727468443!GO:0005938;cell cortex;0.0313200863254069!GO:0006516;glycoprotein catabolic process;0.031517544966663!GO:0009113;purine base biosynthetic process;0.0324719935010487!GO:0006596;polyamine biosynthetic process;0.0327591556593725!GO:0006278;RNA-dependent DNA replication;0.0329056167319559!GO:0007265;Ras protein signal transduction;0.0330572624850312!GO:0000097;sulfur amino acid biosynthetic process;0.0331062721947385!GO:0016884;carbon-nitrogen ligase activity, with glutamine as amido-N-donor;0.0335773380492047!GO:0005784;translocon complex;0.03404144667056!GO:0006415;translational termination;0.03404144667056!GO:0000323;lytic vacuole;0.03404144667056!GO:0005764;lysosome;0.03404144667056!GO:0000781;chromosome, telomeric region;0.0341230534787285!GO:0004300;enoyl-CoA hydratase activity;0.0343021174231044!GO:0006519;amino acid and derivative metabolic process;0.0344391999439103!GO:0000077;DNA damage checkpoint;0.0344482847816549!GO:0004721;phosphoprotein phosphatase activity;0.0352798043231899!GO:0016311;dephosphorylation;0.0361927063574508!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0367494738963441!GO:0051327;M phase of meiotic cell cycle;0.0370489724358942!GO:0007126;meiosis;0.0370489724358942!GO:0004239;methionyl aminopeptidase activity;0.0370671756241916!GO:0001726;ruffle;0.0371548175819437!GO:0046870;cadmium ion binding;0.0372057228815122!GO:0006301;postreplication repair;0.0372057228815122!GO:0046128;purine ribonucleoside metabolic process;0.0377585594615272!GO:0042278;purine nucleoside metabolic process;0.0377585594615272!GO:0006607;NLS-bearing substrate import into nucleus;0.0386816623309718!GO:0000726;non-recombinational repair;0.0391440086518735!GO:0016044;membrane organization and biogenesis;0.0401524511527765!GO:0016018;cyclosporin A binding;0.0402841028381729!GO:0006304;DNA modification;0.0407354430705532!GO:0006266;DNA ligation;0.040923989476538!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0410993497457403!GO:0006564;L-serine biosynthetic process;0.0412452025153051!GO:0042791;5S class rRNA transcription;0.041414531753859!GO:0000127;transcription factor TFIIIC complex;0.041414531753859!GO:0042797;tRNA transcription from RNA polymerase III promoter;0.041414531753859!GO:0042769;DNA damage response, detection of DNA damage;0.0429547432135695!GO:0009119;ribonucleoside metabolic process;0.0433624224857442!GO:0030659;cytoplasmic vesicle membrane;0.0436577468271236!GO:0017134;fibroblast growth factor binding;0.0441076148984585!GO:0008320;protein transmembrane transporter activity;0.0444205331017869!GO:0017166;vinculin binding;0.0444205331017869!GO:0008536;Ran GTPase binding;0.0448919675849163!GO:0001832;blastocyst growth;0.0455803672349187!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0456494557569235!GO:0051297;centrosome organization and biogenesis;0.0458610855322712!GO:0031023;microtubule organizing center organization and biogenesis;0.0458610855322712!GO:0004815;aspartate-tRNA ligase activity;0.0460264349001683!GO:0006422;aspartyl-tRNA aminoacylation;0.0460264349001683!GO:0051287;NAD binding;0.0460464474337069!GO:0008632;apoptotic program;0.0461681158504109!GO:0006650;glycerophospholipid metabolic process;0.0464232760146459!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0468908374452653!GO:0045039;protein import into mitochondrial inner membrane;0.0468908374452653!GO:0006354;RNA elongation;0.0473157279823203!GO:0000118;histone deacetylase complex;0.0474175353671964!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0476966306853352!GO:0051348;negative regulation of transferase activity;0.0480416438303324!GO:0004448;isocitrate dehydrogenase activity;0.0482105762468863!GO:0006733;oxidoreduction coenzyme metabolic process;0.0482105762468863!GO:0042802;identical protein binding;0.0488970692614107!GO:0046112;nucleobase biosynthetic process;0.0493377805571771!GO:0006497;protein amino acid lipidation;0.049356498550444!GO:0042158;lipoprotein biosynthetic process;0.0495987134972484!GO:0030384;phosphoinositide metabolic process;0.049989175159798 | |||
|sample_id=10590 | |sample_id=10590 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=testis | |sample_tissue=testis | ||
|top_motifs=OCT4_SOX2{dimer}:3.34373330104;PITX1..3:2.71974093188;TOPORS:2.12276691599;ZNF384:1.72414536954;AIRE:1.66549826299;STAT5{A,B}:1.65868607104;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.53689595199;NFY{A,B,C}:1.45344252707;FOXM1:1.43051070941;E2F1..5:1.28392948162;MYB:1.19969720912;IKZF2:1.19962431619;NKX2-3_NKX2-5:1.17948168865;ZBTB16:1.15603420256;MYOD1:1.1296579711;FOXD3:1.12059680115;CDC5L:1.10189969198;bHLH_family:1.09722067104;CUX2:1.08905430543;SNAI1..3:1.06191743646;POU2F1..3:1.04993515461;ONECUT1,2:1.03586319445;T:1.02621416913;PBX1:0.928615613904;VSX1,2:0.884746978749;CDX1,2,4:0.870256209967;ZEB1:0.858364415601;NKX6-1,2:0.856546492406;EVI1:0.854658307467;HIF1A:0.851603208878;ALX1:0.84040328845;NRF1:0.833731497453;UFEwm:0.815284909136;STAT1,3:0.80241587672;SP1:0.790708151403;ZNF143:0.779247731491;HOX{A5,B5}:0.775887250703;NFIX:0.77364447298;TEF:0.721954115399;KLF4:0.688904551918;MTF1:0.677204638864;XCPE1{core}:0.674915118986;FOXQ1:0.661859596896;YY1:0.626230262582;GFI1:0.618043108586;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.609203720107;SOX{8,9,10}:0.599776815682;PAX8:0.497664920883;NR5A1,2:0.455116650684;PAX4:0.419812467792;FOXP1:0.398785188719;PAX1,9:0.357591598538;ESRRA:0.351644234883;ELK1,4_GABP{A,B1}:0.332942581052;POU1F1:0.301532664364;RORA:0.252185266244;FOXO1,3,4:0.227412230748;NR6A1:0.203059215776;FOXN1:0.190009022771;GZF1:0.187737284857;GATA4:0.147526406739;ZIC1..3:0.13296566337;PAX2:0.120035471926;HOX{A4,D4}:0.105071721306;NKX2-2,8:0.0835706714628;HNF4A_NR2F1,2:0.0760979166039;LEF1_TCF7_TCF7L1,2:0.0684418766736;TBP:0.0463936910375;NKX2-1,4:0.0413552825984;BPTF:0.0349345987341;ATF4:0.0347342335032;LHX3,4:0.0257808343703;ZNF148:0.00778279453425;LMO2:-0.0286354543454;RBPJ:-0.030165497496;EBF1:-0.0484414876319;GATA6:-0.0732409538182;TBX4,5:-0.0772631292856;ARID5B:-0.0869378926294;SOX17:-0.0918928861771;FOX{I1,J2}:-0.104732600002;FOX{F1,F2,J1}:-0.106735647764;HES1:-0.140286462088;SOX2:-0.157842555324;BREu{core}:-0.166129225469;TFDP1:-0.192655948045;ZFP161:-0.207804957073;NANOG:-0.209102537366;HSF1,2:-0.210187900334;PRRX1,2:-0.22198480395;IKZF1:-0.25146946973;HOX{A6,A7,B6,B7}:-0.257719495381;POU5F1:-0.264283379906;FOXA2:-0.268896094101;HNF1A:-0.304181114941;CRX:-0.31353959768;TLX2:-0.3165574065;ZBTB6:-0.378115440967;HAND1,2:-0.395435001327;RREB1:-0.399807009867;FOX{D1,D2}:-0.416451062799;REST:-0.41697105492;CREB1:-0.421161956034;EN1,2:-0.434209216779;PDX1:-0.454335052112;MYBL2:-0.459533863823;NFIL3:-0.478809620541;NFKB1_REL_RELA:-0.520478330828;RFX1:-0.53543108877;ATF5_CREB3:-0.540895939685;POU3F1..4:-0.545753222544;XBP1:-0.556927264506;AR:-0.567107095199;FOS_FOS{B,L1}_JUN{B,D}:-0.580764409333;POU6F1:-0.581016611201;TP53:-0.585287894619;PPARG:-0.585607830483;MTE{core}:-0.595808816062;PATZ1:-0.607162649629;ADNP_IRX_SIX_ZHX:-0.619131001714;BACH2:-0.620530126842;NFE2L2:-0.632883280321;ALX4:-0.651173784662;RFX2..5_RFXANK_RFXAP:-0.664928152864;AHR_ARNT_ARNT2:-0.665234005651;GFI1B:-0.682009070703;SPIB:-0.700852217493;NHLH1,2:-0.715364462583;SPI1:-0.720125940734;TEAD1:-0.720259610224;PRDM1:-0.727178001006;NKX3-1:-0.731167860935;NR3C1:-0.7332368391;MEF2{A,B,C,D}:-0.753265274969;FOXP3:-0.756727497218;MAZ:-0.761935845307;SOX5:-0.763235139549;GTF2I:-0.778648417839;MYFfamily:-0.781058756544;SREBF1,2:-0.791626273918;NFE2:-0.803088781546;PAX6:-0.804417357978;DMAP1_NCOR{1,2}_SMARC:-0.821070216806;MZF1:-0.836544780923;FOSL2:-0.83725720594;CEBPA,B_DDIT3:-0.860930909759;GCM1,2:-0.861740411183;NR1H4:-0.862902491465;HLF:-0.863446543095;SPZ1:-0.864100434171;ETS1,2:-0.864327361398;HBP1_HMGB_SSRP1_UBTF:-0.868537317526;PAX5:-0.876474150282;MED-1{core}:-0.883036881798;HMGA1,2:-0.887360677087;RUNX1..3:-0.888873792798;NKX3-2:-0.889972780999;FOXL1:-0.924128544031;ELF1,2,4:-0.987359601618;PAX3,7:-0.993272965012;RXR{A,B,G}:-1.02244975839;HMX1:-1.05385069626;NANOG{mouse}:-1.06009363047;HOXA9_MEIS1:-1.09316730767;IRF7:-1.11528582482;DBP:-1.12796060234;ZNF423:-1.13688058857;TFAP2B:-1.13827939321;ATF2:-1.15029059396;TFAP4:-1.19113051625;TGIF1:-1.21420370993;EGR1..3:-1.22198842648;NFE2L1:-1.23650471237;HIC1:-1.24700417336;JUN:-1.27974737876;TFCP2:-1.28426065345;TFAP2{A,C}:-1.35124078617;RXRA_VDR{dimer}:-1.36255621329;ZNF238:-1.37295128746;IRF1,2:-1.39802352708;TAL1_TCF{3,4,12}:-1.43226647016;STAT2,4,6:-1.48555639368;SRF:-1.4856624192;TLX1..3_NFIC{dimer}:-1.49709841797;GTF2A1,2:-1.62721346935;SMAD1..7,9:-1.63358182798;EP300:-1.67891929892;ATF6:-1.71860589245;NFATC1..3:-1.75190471818;ESR1:-1.89055572381;GLI1..3:-1.91183863978;MAFB:-2.17911623334 | |top_motifs=OCT4_SOX2{dimer}:3.34373330104;PITX1..3:2.71974093188;TOPORS:2.12276691599;ZNF384:1.72414536954;AIRE:1.66549826299;STAT5{A,B}:1.65868607104;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.53689595199;NFY{A,B,C}:1.45344252707;FOXM1:1.43051070941;E2F1..5:1.28392948162;MYB:1.19969720912;IKZF2:1.19962431619;NKX2-3_NKX2-5:1.17948168865;ZBTB16:1.15603420256;MYOD1:1.1296579711;FOXD3:1.12059680115;CDC5L:1.10189969198;bHLH_family:1.09722067104;CUX2:1.08905430543;SNAI1..3:1.06191743646;POU2F1..3:1.04993515461;ONECUT1,2:1.03586319445;T:1.02621416913;PBX1:0.928615613904;VSX1,2:0.884746978749;CDX1,2,4:0.870256209967;ZEB1:0.858364415601;NKX6-1,2:0.856546492406;EVI1:0.854658307467;HIF1A:0.851603208878;ALX1:0.84040328845;NRF1:0.833731497453;UFEwm:0.815284909136;STAT1,3:0.80241587672;SP1:0.790708151403;ZNF143:0.779247731491;HOX{A5,B5}:0.775887250703;NFIX:0.77364447298;TEF:0.721954115399;KLF4:0.688904551918;MTF1:0.677204638864;XCPE1{core}:0.674915118986;FOXQ1:0.661859596896;YY1:0.626230262582;GFI1:0.618043108586;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.609203720107;SOX{8,9,10}:0.599776815682;PAX8:0.497664920883;NR5A1,2:0.455116650684;PAX4:0.419812467792;FOXP1:0.398785188719;PAX1,9:0.357591598538;ESRRA:0.351644234883;ELK1,4_GABP{A,B1}:0.332942581052;POU1F1:0.301532664364;RORA:0.252185266244;FOXO1,3,4:0.227412230748;NR6A1:0.203059215776;FOXN1:0.190009022771;GZF1:0.187737284857;GATA4:0.147526406739;ZIC1..3:0.13296566337;PAX2:0.120035471926;HOX{A4,D4}:0.105071721306;NKX2-2,8:0.0835706714628;HNF4A_NR2F1,2:0.0760979166039;LEF1_TCF7_TCF7L1,2:0.0684418766736;TBP:0.0463936910375;NKX2-1,4:0.0413552825984;BPTF:0.0349345987341;ATF4:0.0347342335032;LHX3,4:0.0257808343703;ZNF148:0.00778279453425;LMO2:-0.0286354543454;RBPJ:-0.030165497496;EBF1:-0.0484414876319;GATA6:-0.0732409538182;TBX4,5:-0.0772631292856;ARID5B:-0.0869378926294;SOX17:-0.0918928861771;FOX{I1,J2}:-0.104732600002;FOX{F1,F2,J1}:-0.106735647764;HES1:-0.140286462088;SOX2:-0.157842555324;BREu{core}:-0.166129225469;TFDP1:-0.192655948045;ZFP161:-0.207804957073;NANOG:-0.209102537366;HSF1,2:-0.210187900334;PRRX1,2:-0.22198480395;IKZF1:-0.25146946973;HOX{A6,A7,B6,B7}:-0.257719495381;POU5F1:-0.264283379906;FOXA2:-0.268896094101;HNF1A:-0.304181114941;CRX:-0.31353959768;TLX2:-0.3165574065;ZBTB6:-0.378115440967;HAND1,2:-0.395435001327;RREB1:-0.399807009867;FOX{D1,D2}:-0.416451062799;REST:-0.41697105492;CREB1:-0.421161956034;EN1,2:-0.434209216779;PDX1:-0.454335052112;MYBL2:-0.459533863823;NFIL3:-0.478809620541;NFKB1_REL_RELA:-0.520478330828;RFX1:-0.53543108877;ATF5_CREB3:-0.540895939685;POU3F1..4:-0.545753222544;XBP1:-0.556927264506;AR:-0.567107095199;FOS_FOS{B,L1}_JUN{B,D}:-0.580764409333;POU6F1:-0.581016611201;TP53:-0.585287894619;PPARG:-0.585607830483;MTE{core}:-0.595808816062;PATZ1:-0.607162649629;ADNP_IRX_SIX_ZHX:-0.619131001714;BACH2:-0.620530126842;NFE2L2:-0.632883280321;ALX4:-0.651173784662;RFX2..5_RFXANK_RFXAP:-0.664928152864;AHR_ARNT_ARNT2:-0.665234005651;GFI1B:-0.682009070703;SPIB:-0.700852217493;NHLH1,2:-0.715364462583;SPI1:-0.720125940734;TEAD1:-0.720259610224;PRDM1:-0.727178001006;NKX3-1:-0.731167860935;NR3C1:-0.7332368391;MEF2{A,B,C,D}:-0.753265274969;FOXP3:-0.756727497218;MAZ:-0.761935845307;SOX5:-0.763235139549;GTF2I:-0.778648417839;MYFfamily:-0.781058756544;SREBF1,2:-0.791626273918;NFE2:-0.803088781546;PAX6:-0.804417357978;DMAP1_NCOR{1,2}_SMARC:-0.821070216806;MZF1:-0.836544780923;FOSL2:-0.83725720594;CEBPA,B_DDIT3:-0.860930909759;GCM1,2:-0.861740411183;NR1H4:-0.862902491465;HLF:-0.863446543095;SPZ1:-0.864100434171;ETS1,2:-0.864327361398;HBP1_HMGB_SSRP1_UBTF:-0.868537317526;PAX5:-0.876474150282;MED-1{core}:-0.883036881798;HMGA1,2:-0.887360677087;RUNX1..3:-0.888873792798;NKX3-2:-0.889972780999;FOXL1:-0.924128544031;ELF1,2,4:-0.987359601618;PAX3,7:-0.993272965012;RXR{A,B,G}:-1.02244975839;HMX1:-1.05385069626;NANOG{mouse}:-1.06009363047;HOXA9_MEIS1:-1.09316730767;IRF7:-1.11528582482;DBP:-1.12796060234;ZNF423:-1.13688058857;TFAP2B:-1.13827939321;ATF2:-1.15029059396;TFAP4:-1.19113051625;TGIF1:-1.21420370993;EGR1..3:-1.22198842648;NFE2L1:-1.23650471237;HIC1:-1.24700417336;JUN:-1.27974737876;TFCP2:-1.28426065345;TFAP2{A,C}:-1.35124078617;RXRA_VDR{dimer}:-1.36255621329;ZNF238:-1.37295128746;IRF1,2:-1.39802352708;TAL1_TCF{3,4,12}:-1.43226647016;STAT2,4,6:-1.48555639368;SRF:-1.4856624192;TLX1..3_NFIC{dimer}:-1.49709841797;GTF2A1,2:-1.62721346935;SMAD1..7,9:-1.63358182798;EP300:-1.67891929892;ATF6:-1.71860589245;NFATC1..3:-1.75190471818;ESR1:-1.89055572381;GLI1..3:-1.91183863978;MAFB:-2.17911623334 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10590-108D5;search_select_hide=table117:FF:10590-108D5 | |||
}} | }} | ||
Latest revision as of 14:30, 3 June 2020
| Name: | testicular germ cell embryonal carcinoma cell line:NEC8 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11726 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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|
Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11726
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11726
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.859 |
| 10 | 10 | 0.669 |
| 100 | 100 | 0.0865 |
| 101 | 101 | 0.942 |
| 102 | 102 | 0.331 |
| 103 | 103 | 0.299 |
| 104 | 104 | 0.408 |
| 105 | 105 | 0.149 |
| 106 | 106 | 0.0614 |
| 107 | 107 | 0.397 |
| 108 | 108 | 0.498 |
| 109 | 109 | 0.776 |
| 11 | 11 | 0.918 |
| 110 | 110 | 0.858 |
| 111 | 111 | 0.949 |
| 112 | 112 | 0.715 |
| 113 | 113 | 0.0412 |
| 114 | 114 | 0.878 |
| 115 | 115 | 0.687 |
| 116 | 116 | 0.657 |
| 117 | 117 | 0.242 |
| 118 | 118 | 0.544 |
| 119 | 119 | 0.667 |
| 12 | 12 | 0.298 |
| 120 | 120 | 0.581 |
| 121 | 121 | 0.771 |
| 122 | 122 | 0.418 |
| 123 | 123 | 0.141 |
| 124 | 124 | 0.31 |
| 125 | 125 | 0.484 |
| 126 | 126 | 0.385 |
| 127 | 127 | 0.128 |
| 128 | 128 | 0.479 |
| 129 | 129 | 0.922 |
| 13 | 13 | 0.0108 |
| 130 | 130 | 0.406 |
| 131 | 131 | 0.554 |
| 132 | 132 | 0.847 |
| 133 | 133 | 0.0414 |
| 134 | 134 | 0.0222 |
| 135 | 135 | 0.0085 |
| 136 | 136 | 0.0336 |
| 137 | 137 | 0.919 |
| 138 | 138 | 0.186 |
| 139 | 139 | 0.513 |
| 14 | 14 | 0.407 |
| 140 | 140 | 0.611 |
| 141 | 141 | 0.856 |
| 142 | 142 | 0.835 |
| 143 | 143 | 0.375 |
| 144 | 144 | 0.536 |
| 145 | 145 | 0.541 |
| 146 | 146 | 0.224 |
| 147 | 147 | 0.661 |
| 148 | 148 | 0.355 |
| 149 | 149 | 0.0545 |
| 15 | 15 | 0.379 |
| 150 | 150 | 0.931 |
| 151 | 151 | 0.0522 |
| 152 | 152 | 0.122 |
| 153 | 153 | 0.907 |
| 154 | 154 | 0.934 |
| 155 | 155 | 0.361 |
| 156 | 156 | 0.277 |
| 157 | 157 | 0.839 |
| 158 | 158 | 0.737 |
| 159 | 159 | 0.773 |
| 16 | 16 | 0.737 |
| 160 | 160 | 0.477 |
| 161 | 161 | 0.476 |
| 162 | 162 | 0.258 |
| 163 | 163 | 0.458 |
| 164 | 164 | 0.77 |
| 165 | 165 | 0.961 |
| 166 | 166 | 0.36 |
| 167 | 167 | 0.248 |
| 168 | 168 | 0.658 |
| 169 | 169 | 0.227 |
| 17 | 17 | 0.848 |
| 18 | 18 | 0.595 |
| 19 | 19 | 0.401 |
| 2 | 2 | 0.218 |
| 20 | 20 | 0.439 |
| 21 | 21 | 0.458 |
| 22 | 22 | 0.18 |
| 23 | 23 | 0.0184 |
| 24 | 24 | 0.864 |
| 25 | 25 | 0.551 |
| 26 | 26 | 0.406 |
| 27 | 27 | 0.272 |
| 28 | 28 | 0.869 |
| 29 | 29 | 0.188 |
| 3 | 3 | 0.549 |
| 30 | 30 | 0.12 |
| 31 | 31 | 0.323 |
| 32 | 32 | 0.0187 |
| 33 | 33 | 0.251 |
| 34 | 34 | 0.347 |
| 35 | 35 | 0.768 |
| 36 | 36 | 0.249 |
| 37 | 37 | 0.821 |
| 38 | 38 | 0.762 |
| 39 | 39 | 0.541 |
| 4 | 4 | 0.222 |
| 40 | 40 | 0.0527 |
| 41 | 41 | 0.436 |
| 42 | 42 | 0.854 |
| 43 | 43 | 0.646 |
| 44 | 44 | 0.434 |
| 45 | 45 | 0.618 |
| 46 | 46 | 0.985 |
| 47 | 47 | 0.1 |
| 48 | 48 | 0.352 |
| 49 | 49 | 0.965 |
| 5 | 5 | 0.284 |
| 50 | 50 | 0.62 |
| 51 | 51 | 0.665 |
| 52 | 52 | 0.536 |
| 53 | 53 | 0.963 |
| 54 | 54 | 0.922 |
| 55 | 55 | 0.399 |
| 56 | 56 | 0.685 |
| 57 | 57 | 0.585 |
| 58 | 58 | 0.651 |
| 59 | 59 | 0.504 |
| 6 | 6 | 0.368 |
| 60 | 60 | 0.356 |
| 61 | 61 | 0.574 |
| 62 | 62 | 0.647 |
| 63 | 63 | 0.707 |
| 64 | 64 | 0.885 |
| 65 | 65 | 0.179 |
| 66 | 66 | 0.00228 |
| 67 | 67 | 0.639 |
| 68 | 68 | 0.275 |
| 69 | 69 | 0.216 |
| 7 | 7 | 0.402 |
| 70 | 70 | 0.201 |
| 71 | 71 | 0.969 |
| 72 | 72 | 0.858 |
| 73 | 73 | 0.283 |
| 74 | 74 | 0.804 |
| 75 | 75 | 0.534 |
| 76 | 76 | 0.259 |
| 77 | 77 | 0.197 |
| 78 | 78 | 0.118 |
| 79 | 79 | 0.471 |
| 8 | 8 | 0.591 |
| 80 | 80 | 0.027 |
| 81 | 81 | 0.421 |
| 82 | 82 | 0.444 |
| 83 | 83 | 0.123 |
| 84 | 84 | 0.965 |
| 85 | 85 | 0.301 |
| 86 | 86 | 0.877 |
| 87 | 87 | 0.093 |
| 88 | 88 | 0.588 |
| 89 | 89 | 0.025 |
| 9 | 9 | 0.0406 |
| 90 | 90 | 0.753 |
| 91 | 91 | 0.0933 |
| 92 | 92 | 0.0563 |
| 93 | 93 | 0.618 |
| 94 | 94 | 0.715 |
| 95 | 95 | 0.521 |
| 96 | 96 | 0.0628 |
| 97 | 97 | 0.638 |
| 98 | 98 | 0.794 |
| 99 | 99 | 0.89 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11726
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
CL:0000586 germ cell
DOID:3095 germ cell and embryonal cancer
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100297 carcinoma cell line sample
UBERON:0000473 testis
UBERON:0000922 embryo
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
0000039 (germ line cell)
0000586 (germ cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
3095 (germ cell and embryonal cancer)
305 (carcinoma)
2994 (germ cell cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000473 (testis)
0000991 (gonad)
0005156 (reproductive structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003135 (male reproductive organ)
0003133 (reproductive organ)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0003101 (male organism)
0000079 (male reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0009117 (indifferent gonad)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005564 (gonad primordium)
UBERON:0010316 (germ layer / neural crest)
