FF:11747-123G1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004787 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008545;DRR009417;DRZ000842;DRZ002227;DRZ012192;DRZ013577 | ||
|ancestors_in_anatomy_facet=UBERON:0001013,UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002570 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000270 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520adipose%252c%2520donor1.CNhs12363.11747-123G1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520adipose%252c%2520donor1.CNhs12363.11747-123G1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520adipose%252c%2520donor1.CNhs12363.11747-123G1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520adipose%252c%2520donor1.CNhs12363.11747-123G1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520adipose%252c%2520donor1.CNhs12363.11747-123G1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11747-123G1 | |id=FF:11747-123G1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000270 | ||
|is_obsolete= | |||
|library_id=CNhs12363 | |||
|library_id_phase_based=2:CNhs12363 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11747 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11747 | |||
|name=mesenchymal precursor cell - adipose, donor1 | |name=mesenchymal precursor cell - adipose, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12363,LSID914,release011,COMPLETED | |profile_hcage=CNhs12363,LSID914,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.0429921104847091,0,-0.277362132193514,0.0311168144940819,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0929066829485663,0,0,0.0272952498551951,0,0,0.271868740795765,0,0,-0.072540262379001,0,0,0,0,0,0,0,0,0,0,0.0604163273998613,0,-0.0070345213163963,0.0604163273998613,0.203310140571095,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0,0.213654996322497,0,0,0.0161015394739056,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0604163273998613,0,0,0,-0.0253422884908298,0.0869307470434321,0,0,0,0,0,0.0204949861274775,0,0,0,-0.220224345713983,-0.0256655602133873,0,0.277730391299233,0.08034894793918,0,0.0154098154492961,0.106471624953358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0160246459832811,0.0604163273998613,0,0,-0.0618465489435475,-0.295218755459183,0.0604163273998613,0,0.0604163273998613,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.0154098154492961,0,0,0.113445166687003,0,0.0604163273998613,0,0,0,0.277730391299233,0,0,-0.00506648378559016,0,-0.163438861186907,-0.0830988151236106,0.0302081636999307,0,0.115399483078863,0,0.16069789587836,0,0,0.0604163273998613,0,0.0604163273998613,0.0604163273998613,0,0.182527490612537,0,0.811044295906781,0.0302081636999307,0,0.0604163273998613,0,0.0575554773000705,-0.0277418395991741,0,-0.00363594670609433,-0.0683442610773682,0,0,0,0,0.491253034229735,0,-0.0604631563938793,0.120589972247678,-0.221611588102807,0.334908209661172,0.0136116685074813,0,0,0,0.0435292331127463,-0.279785103117247,0,0,0.063133466780037,0.0863231654652675,0,0,1.11268815809469,0,0.0628410570765423,0.194352644664593,0,0.0383715838870884,0,0,0,0,0,0,0,0,0,0,0,0.138094312171681,-0.213543429991966,0,0,0,0,-0.209998865232589,0,0.0103325301458704,0.353309790234824,0.0823778396992498,-0.0605317106334913,-0.0999598096186721,0,-0.188944560322911,0.00654916396862325,-0.456241688989944,-0.0442292505443849,0.0947105421288358,0.179844917513975,0,0.0204949861274775,-0.125206618860214,-0.007522230315687,-0.120658548914493,-0.0182007875675186,0.521960349071911,-0.230179640426122,0,0,0.0604163273998613,0.13059474681486,0,-0.151402963237141,0.0937459112457929,-0.098003948318718,-0.10582788169784,-0.201980952912945,-0.0276038986079447,0.119070202971806,0.254656345975497,-0.0876098158327726,0,0.645087846407206,0,0,-0.090104171961993,0.0312178007665277,-0.0131938113070476,-0.015387378979159,0,-0.173330104245879,-0.0683442610773682,0,-0.045847593974278,-0.109211585451498,0,0,-0.20895059380759,0.0604163273998613,0,0,0,0.0604163273998613,0.108104843647407,-0.228844785465064,-0.172439234155683,0,-0.0965157382531745,0.0538893257016811,-0.141962401570036,0,-0.0712263775978511,0.0604163273998613,-0.0180929245437097,-0.173709246378321,0,-0.00588761043995225,-0.00818643989283585,0.0383194442320924,-0.111747447826636,-0.0584468268118252,-0.0986624496839833,-0.0199052226950482,-0.220224345713983,0.342595507185524,-0.101364614532639,-0.0881268324752877,0,0.127339997700451,-0.257597730256674,-0.0695557100375097,-0.0082873799971954,0,-0.0522284104078126,0,-0.135344480846487,0,-0.218900120413073,-0.0505360999647346,-0.278591478702326,0.126383048623488,0,-0.143032081868988,0.357536745403664,0,0,0,0,0.091745308165335,0.0525731448152621,-0.181442264164659,-0.0284323450400842,0,0.207973677568408,0,0.0604163273998613,0.342685931465445,0.0751713198007131,0,-0.209323812582926,-0.0253422884908298,-0.293568683630193,-0.115971073434934,0,0,0.000983723189968533,0,0,-0.445230167939671,0.0886923556449879,-0.174014519304914,0.192442463166964,0,-0.078414645754325,0,0,-0.117111438565314,0.113445166687003,0.0773135143291253,0,0,0.0821250998335886,0.224616115896698,0,0.0302081636999307,0.468393480985451,-0.0183783173179848,0.0604163273998613,0,0,0,0,0,0,-0.291285287495762,0.155553756189943,0,-0.032106241038441,0,0.113445166687003,0,0.277730391299233,0,0.00792542737163573,0,0.310647357565102,0.594308168871164,0.0015595522315528,-0.00957224898941772,0,0,0,0,0.332952377253287,-0.142820234694862,0,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0,0,-0.057730457053664,-0.173268396124909,0,0,0,0.212943249906715,0,0,0.16069789587836,0.0495199602742303,-0.154222479308034,0,0,0.211314575090513,0,-0.156759218103581,-0.0815818795468414,0,0.0210790568459688,0.0899554121390747,-0.111617235740279,0,0,-0.147901965102885,0,0.0604163273998613,0.149554233791587,0,0,-0.0171520087108695,0,0,0,0,0,0.16069789587836,-0.100869345712753,0.0561033942999832,0,0,0,0,0,0,0,0,0,0,-0.0128783975800455,0.0684738392198493,0.16069789587836,0,0,0,0,0,0,0.393736384090274,-0.0758749802571711,0,0,0,0,0,0,0,0,0.0184717118452635,0,0,0.0604163273998613,0,0,0.213654996322497,0,0,0,0,0.00181730158830251,0,0,-0.277362132193514,0,0,0,0,0,0,0,0,0,0,0,0,0,0.037378809842912,-0.331051417045274,0,0,0,0,0,0,0,0.0358140593590114,0,0.0604163273998613,0,0,0.0468135221693826,0,0,0,-0.104796384789156,0,0.0429921104847091,0,0,0,0,0,0.0174857593134157,0.0567225833435015,0,0,0,0,0,0,0,0,0,0,0.121056195749987,0.0302081636999307,0,0,0.321244300952245,0.0631030517299034,0.0422782324855363,-0.0655179469767413,0,0,0.206839578635015,0,0,0,0,0,0,-0.00113226032859641,0.0604163273998613,0,0,0,0,0,0,0.0302081636999307,0,0,0,0,0,0,0,0,0,0,0.0604163273998613,0,0,0,0,0,0,-0.0395033879465019,0,0,0,0,0.369826637063822,0,0,0.271868740795765,0,0,-0.0920328098005262,0,0,0,0,0.0998940621655151,0,-0.0203040566307831,0.631843295373749,0.0147287606552372,0,0,0,0.0844796231671615,0,0,0,0,0.303049249644921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0604163273998613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0929066829485663,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0604163273998613,0.0604163273998613,0,0,0,0,0,0.0604163273998613,0.0227112200680848,0,0,0,0,0,0,0,0.0604163273998613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162093923231336,0,0,0,-0.213086229657044,0,0,0,0,0,0,0.0604163273998613,0,0.0604163273998613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| |||
|rna_box=123 | |rna_box=123 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=42.6945 | |rna_weight_ug=42.6945 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.935169088807e-238!GO:0043231;intracellular membrane-bound organelle;6.85198763019015e-191!GO:0043226;organelle;6.85198763019015e-191!GO:0043227;membrane-bound organelle;1.15169051342992e-190!GO:0043229;intracellular organelle;1.15169051342992e-190!GO:0005737;cytoplasm;7.80485512183895e-190!GO:0044422;organelle part;1.11486752797834e-145!GO:0044446;intracellular organelle part;3.46636359500174e-144!GO:0044444;cytoplasmic part;1.2830762602199e-142!GO:0032991;macromolecular complex;8.45323021643496e-101!GO:0030529;ribonucleoprotein complex;1.92864721237443e-93!GO:0044237;cellular metabolic process;5.64375751355778e-88!GO:0044238;primary metabolic process;5.2871759076079e-87!GO:0043170;macromolecule metabolic process;1.48813320777473e-79!GO:0043233;organelle lumen;3.33355155211259e-76!GO:0031974;membrane-enclosed lumen;3.33355155211259e-76!GO:0005515;protein binding;2.30020190319718e-73!GO:0005739;mitochondrion;1.36398329822471e-72!GO:0044428;nuclear part;4.16905981319363e-70!GO:0005634;nucleus;1.89251239472801e-69!GO:0003723;RNA binding;8.30049794670299e-68!GO:0005840;ribosome;5.08604321702252e-57!GO:0031090;organelle membrane;4.66883809031895e-53!GO:0006412;translation;1.25905833887241e-52!GO:0006396;RNA processing;9.60411704312169e-51!GO:0003735;structural constituent of ribosome;1.01994306139822e-49!GO:0043234;protein complex;1.05269875125095e-48!GO:0044429;mitochondrial part;3.67487527768827e-48!GO:0019538;protein metabolic process;8.88700410799585e-48!GO:0009058;biosynthetic process;2.08420384816751e-46!GO:0016043;cellular component organization and biogenesis;4.10757007376513e-45!GO:0015031;protein transport;1.74956767827396e-44!GO:0044249;cellular biosynthetic process;5.95203066949529e-43!GO:0031981;nuclear lumen;6.0904901630207e-43!GO:0033279;ribosomal subunit;1.02072847146275e-42!GO:0044260;cellular macromolecule metabolic process;2.07433643476096e-42!GO:0033036;macromolecule localization;2.18293806011262e-42!GO:0044267;cellular protein metabolic process;6.93376697073186e-42!GO:0009059;macromolecule biosynthetic process;6.93376697073186e-42!GO:0005829;cytosol;3.66551451324081e-41!GO:0045184;establishment of protein localization;6.00288306235943e-41!GO:0010467;gene expression;6.70044813246938e-41!GO:0031967;organelle envelope;1.11005073411841e-40!GO:0043283;biopolymer metabolic process;1.31661610123073e-40!GO:0031975;envelope;2.77532312210996e-40!GO:0008104;protein localization;1.83964868625592e-39!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.39511238766521e-38!GO:0016071;mRNA metabolic process;7.77072705198595e-38!GO:0008380;RNA splicing;1.53060745844982e-36!GO:0046907;intracellular transport;9.30555740812131e-34!GO:0006397;mRNA processing;1.11697294167571e-33!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.53023000073313e-33!GO:0005740;mitochondrial envelope;4.27714512057338e-31!GO:0043228;non-membrane-bound organelle;4.78163983080978e-31!GO:0043232;intracellular non-membrane-bound organelle;4.78163983080978e-31!GO:0065003;macromolecular complex assembly;3.85425264161377e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.66445290963924e-30!GO:0006996;organelle organization and biogenesis;3.08597293605816e-29!GO:0031966;mitochondrial membrane;5.43065736836265e-29!GO:0006886;intracellular protein transport;8.40021776452838e-29!GO:0019866;organelle inner membrane;3.05342891784087e-28!GO:0022607;cellular component assembly;1.61164223956264e-27!GO:0005743;mitochondrial inner membrane;1.42445325253566e-26!GO:0005681;spliceosome;1.21884905285511e-25!GO:0005654;nucleoplasm;4.54771931680117e-25!GO:0006259;DNA metabolic process;6.03995630104597e-25!GO:0044445;cytosolic part;5.70340818533771e-24!GO:0006119;oxidative phosphorylation;6.25302468862243e-24!GO:0005783;endoplasmic reticulum;3.2324982966476e-23!GO:0015934;large ribosomal subunit;1.68843073491804e-22!GO:0006457;protein folding;5.39073814530359e-22!GO:0044455;mitochondrial membrane part;6.23103015083628e-22!GO:0012505;endomembrane system;7.00654243262383e-22!GO:0051649;establishment of cellular localization;3.06050161418279e-21!GO:0015935;small ribosomal subunit;3.06050161418279e-21!GO:0051641;cellular localization;5.3082878692263e-21!GO:0003676;nucleic acid binding;8.11869319992748e-21!GO:0031980;mitochondrial lumen;1.23954905973441e-20!GO:0005759;mitochondrial matrix;1.23954905973441e-20!GO:0044451;nucleoplasm part;4.80691482300549e-20!GO:0007049;cell cycle;5.84392269163614e-20!GO:0016462;pyrophosphatase activity;9.30001421459618e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.08187453119986e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;1.79129486917688e-19!GO:0044432;endoplasmic reticulum part;2.37239821283816e-19!GO:0005730;nucleolus;5.57077946003985e-19!GO:0017111;nucleoside-triphosphatase activity;6.94671931209883e-19!GO:0005746;mitochondrial respiratory chain;1.29697077734858e-18!GO:0000166;nucleotide binding;1.52094148019076e-18!GO:0022618;protein-RNA complex assembly;1.52567680325365e-18!GO:0051186;cofactor metabolic process;1.92376221483511e-18!GO:0048770;pigment granule;8.14606684021243e-18!GO:0042470;melanosome;8.14606684021243e-18!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;8.43572793694266e-18!GO:0016070;RNA metabolic process;3.61795184310174e-17!GO:0000502;proteasome complex (sensu Eukaryota);3.76759078453018e-17!GO:0005761;mitochondrial ribosome;1.08597127561123e-16!GO:0000313;organellar ribosome;1.08597127561123e-16!GO:0050136;NADH dehydrogenase (quinone) activity;2.30062773095399e-16!GO:0003954;NADH dehydrogenase activity;2.30062773095399e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.30062773095399e-16!GO:0008134;transcription factor binding;3.21358223206562e-16!GO:0005794;Golgi apparatus;3.77745508776918e-16!GO:0008135;translation factor activity, nucleic acid binding;5.45446126270813e-16!GO:0043285;biopolymer catabolic process;9.96044590201153e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.45680727662173e-15!GO:0022402;cell cycle process;1.72320875804196e-15!GO:0016874;ligase activity;2.83676574774108e-15!GO:0006605;protein targeting;3.50655332047586e-15!GO:0042254;ribosome biogenesis and assembly;6.38226607474231e-15!GO:0044265;cellular macromolecule catabolic process;6.38226607474231e-15!GO:0051082;unfolded protein binding;6.38226607474231e-15!GO:0000278;mitotic cell cycle;7.92114333398901e-15!GO:0006974;response to DNA damage stimulus;8.5370764353343e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.00526074308953e-14!GO:0009057;macromolecule catabolic process;1.02575677573324e-14!GO:0006732;coenzyme metabolic process;1.11599514244845e-14!GO:0048193;Golgi vesicle transport;1.16358995663347e-14!GO:0042775;organelle ATP synthesis coupled electron transport;1.30585392897673e-14!GO:0042773;ATP synthesis coupled electron transport;1.30585392897673e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;1.4995679454634e-14!GO:0030964;NADH dehydrogenase complex (quinone);1.6069400000189e-14!GO:0045271;respiratory chain complex I;1.6069400000189e-14!GO:0005747;mitochondrial respiratory chain complex I;1.6069400000189e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.76953603704445e-14!GO:0019941;modification-dependent protein catabolic process;2.78961512522602e-14!GO:0043632;modification-dependent macromolecule catabolic process;2.78961512522602e-14!GO:0030163;protein catabolic process;3.79860357985238e-14!GO:0044257;cellular protein catabolic process;3.96610134928235e-14!GO:0006511;ubiquitin-dependent protein catabolic process;4.25958535771315e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.83883217942771e-14!GO:0044248;cellular catabolic process;5.52962604111267e-14!GO:0006512;ubiquitin cycle;8.99140668955707e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;9.49052432545623e-14!GO:0000375;RNA splicing, via transesterification reactions;9.49052432545623e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;9.49052432545623e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.61611592445577e-13!GO:0005793;ER-Golgi intermediate compartment;4.89611926935403e-13!GO:0005789;endoplasmic reticulum membrane;5.52192546878834e-13!GO:0017076;purine nucleotide binding;1.27071823906112e-12!GO:0003743;translation initiation factor activity;1.88871251744405e-12!GO:0032553;ribonucleotide binding;2.0766845581219e-12!GO:0032555;purine ribonucleotide binding;2.0766845581219e-12!GO:0009055;electron carrier activity;4.8477438677157e-12!GO:0006413;translational initiation;5.76938735931923e-12!GO:0009259;ribonucleotide metabolic process;6.92806728680165e-12!GO:0016192;vesicle-mediated transport;8.74466057936402e-12!GO:0006281;DNA repair;8.83267872319085e-12!GO:0005694;chromosome;1.43387930939168e-11!GO:0009719;response to endogenous stimulus;1.44255917094879e-11!GO:0006163;purine nucleotide metabolic process;2.30685047003551e-11!GO:0000087;M phase of mitotic cell cycle;4.59963359542853e-11!GO:0006399;tRNA metabolic process;5.0062965205979e-11!GO:0007067;mitosis;7.03471604096986e-11!GO:0009150;purine ribonucleotide metabolic process;7.1401925096391e-11!GO:0006260;DNA replication;7.35839570911403e-11!GO:0006164;purine nucleotide biosynthetic process;1.4108621463275e-10!GO:0006446;regulation of translational initiation;1.5187690253804e-10!GO:0009260;ribonucleotide biosynthetic process;1.52342144374415e-10!GO:0003712;transcription cofactor activity;1.60991446136088e-10!GO:0044427;chromosomal part;1.65061872783255e-10!GO:0005635;nuclear envelope;1.81621730262751e-10!GO:0000074;regulation of progression through cell cycle;2.58756987408381e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.64853766262997e-10!GO:0051726;regulation of cell cycle;4.06469737244605e-10!GO:0009152;purine ribonucleotide biosynthetic process;4.18087440023549e-10!GO:0005524;ATP binding;6.21175995261823e-10!GO:0022403;cell cycle phase;6.21826909634242e-10!GO:0016604;nuclear body;6.72575777139707e-10!GO:0016887;ATPase activity;6.95046135782633e-10!GO:0031965;nuclear membrane;7.01729954108484e-10!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;8.55961985486159e-10!GO:0006364;rRNA processing;1.03051376171368e-09!GO:0044453;nuclear membrane part;1.04347871311862e-09!GO:0030554;adenyl nucleotide binding;1.18936210612896e-09!GO:0042623;ATPase activity, coupled;1.24819092227491e-09!GO:0016491;oxidoreductase activity;1.26465660506542e-09!GO:0032559;adenyl ribonucleotide binding;1.46053263990371e-09!GO:0006913;nucleocytoplasmic transport;1.50477844766327e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.54746614571467e-09!GO:0051276;chromosome organization and biogenesis;1.87254277401487e-09!GO:0016072;rRNA metabolic process;1.92953939211346e-09!GO:0045333;cellular respiration;2.08720810843646e-09!GO:0009060;aerobic respiration;2.18147694345269e-09!GO:0009141;nucleoside triphosphate metabolic process;2.31602332881955e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.41274398043677e-09!GO:0043412;biopolymer modification;2.46486744714592e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.75163039695731e-09!GO:0009144;purine nucleoside triphosphate metabolic process;2.75163039695731e-09!GO:0051169;nuclear transport;3.00267045780984e-09!GO:0048523;negative regulation of cellular process;3.15959760569488e-09!GO:0005788;endoplasmic reticulum lumen;3.21748292536429e-09!GO:0051301;cell division;3.57099581129714e-09!GO:0051188;cofactor biosynthetic process;3.57099581129714e-09!GO:0006888;ER to Golgi vesicle-mediated transport;5.29403856528952e-09!GO:0012501;programmed cell death;5.30553022803886e-09!GO:0006366;transcription from RNA polymerase II promoter;7.01689293416577e-09!GO:0009142;nucleoside triphosphate biosynthetic process;7.14942308667891e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.14942308667891e-09!GO:0006915;apoptosis;8.7741820537763e-09!GO:0009056;catabolic process;8.83168155518656e-09!GO:0015986;ATP synthesis coupled proton transport;1.19405750221573e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.19405750221573e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.28882317885876e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.28882317885876e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.36204616673279e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.36204616673279e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.36204616673279e-08!GO:0008565;protein transporter activity;1.52823027823207e-08!GO:0030532;small nuclear ribonucleoprotein complex;1.68542517872836e-08!GO:0009117;nucleotide metabolic process;1.68542517872836e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;1.75836057541597e-08!GO:0043038;amino acid activation;2.01163889556714e-08!GO:0006418;tRNA aminoacylation for protein translation;2.01163889556714e-08!GO:0043039;tRNA aminoacylation;2.01163889556714e-08!GO:0030120;vesicle coat;2.83364339560169e-08!GO:0030662;coated vesicle membrane;2.83364339560169e-08!GO:0065002;intracellular protein transport across a membrane;3.13478289208729e-08!GO:0017038;protein import;3.31687151539383e-08!GO:0051187;cofactor catabolic process;3.66709884607848e-08!GO:0016607;nuclear speck;3.759315914234e-08!GO:0065004;protein-DNA complex assembly;4.06901481231383e-08!GO:0006099;tricarboxylic acid cycle;4.21697967730744e-08!GO:0046356;acetyl-CoA catabolic process;4.21697967730744e-08!GO:0008219;cell death;4.21697967730744e-08!GO:0016265;death;4.21697967730744e-08!GO:0006461;protein complex assembly;4.22740230234965e-08!GO:0046034;ATP metabolic process;4.36060082776193e-08!GO:0000279;M phase;4.51568954322657e-08!GO:0006323;DNA packaging;4.58736826164041e-08!GO:0019829;cation-transporting ATPase activity;4.60628732994799e-08!GO:0004386;helicase activity;5.3158837666213e-08!GO:0008639;small protein conjugating enzyme activity;5.66500459570713e-08!GO:0006464;protein modification process;7.63672591339534e-08!GO:0009109;coenzyme catabolic process;1.03185429121823e-07!GO:0008026;ATP-dependent helicase activity;1.04422738262528e-07!GO:0043566;structure-specific DNA binding;1.04422738262528e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.08448448266752e-07!GO:0019787;small conjugating protein ligase activity;1.08448448266752e-07!GO:0004842;ubiquitin-protein ligase activity;1.09727154699063e-07!GO:0003924;GTPase activity;1.19217238889599e-07!GO:0016853;isomerase activity;1.27250043069684e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.27250043069684e-07!GO:0048519;negative regulation of biological process;1.61315424397113e-07!GO:0006084;acetyl-CoA metabolic process;1.63394239176543e-07!GO:0005643;nuclear pore;1.63394239176543e-07!GO:0044431;Golgi apparatus part;1.75609626967548e-07!GO:0006754;ATP biosynthetic process;1.80798293400235e-07!GO:0006753;nucleoside phosphate metabolic process;1.80798293400235e-07!GO:0003697;single-stranded DNA binding;1.8106114320037e-07!GO:0009108;coenzyme biosynthetic process;1.82109033999194e-07!GO:0051246;regulation of protein metabolic process;3.11407270216963e-07!GO:0005768;endosome;3.19104957867729e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.70934614365602e-07!GO:0048475;coated membrane;4.34150338338603e-07!GO:0030117;membrane coat;4.34150338338603e-07!GO:0031324;negative regulation of cellular metabolic process;4.82321945450582e-07!GO:0005839;proteasome core complex (sensu Eukaryota);5.02364624379065e-07!GO:0007005;mitochondrion organization and biogenesis;5.02364624379065e-07!GO:0016779;nucleotidyltransferase activity;5.51567057823624e-07!GO:0006333;chromatin assembly or disassembly;6.39483079554128e-07!GO:0045259;proton-transporting ATP synthase complex;9.61537114914386e-07!GO:0016469;proton-transporting two-sector ATPase complex;9.97910479375555e-07!GO:0016881;acid-amino acid ligase activity;1.03946043082173e-06!GO:0000785;chromatin;1.05204343189049e-06!GO:0006091;generation of precursor metabolites and energy;1.12156564416966e-06!GO:0006752;group transfer coenzyme metabolic process;1.1693909335221e-06!GO:0050794;regulation of cellular process;1.33819697016829e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.51404289474884e-06!GO:0016787;hydrolase activity;1.89450074615799e-06!GO:0006403;RNA localization;2.11086989207371e-06!GO:0046930;pore complex;2.20208283534861e-06!GO:0000245;spliceosome assembly;2.37411850014099e-06!GO:0050657;nucleic acid transport;2.45842741904835e-06!GO:0051236;establishment of RNA localization;2.45842741904835e-06!GO:0050658;RNA transport;2.45842741904835e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;2.52845443278664e-06!GO:0016564;transcription repressor activity;2.56305519762184e-06!GO:0043687;post-translational protein modification;2.79779021104101e-06!GO:0005667;transcription factor complex;2.80857617464036e-06!GO:0003714;transcription corepressor activity;2.82503700862826e-06!GO:0005762;mitochondrial large ribosomal subunit;2.96073351400355e-06!GO:0000315;organellar large ribosomal subunit;2.96073351400355e-06!GO:0015630;microtubule cytoskeleton;3.39701271102104e-06!GO:0004298;threonine endopeptidase activity;3.43990956222113e-06!GO:0016859;cis-trans isomerase activity;3.45142425267362e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.93273948701501e-06!GO:0044440;endosomal part;4.89072472952059e-06!GO:0010008;endosome membrane;4.89072472952059e-06!GO:0006613;cotranslational protein targeting to membrane;4.92042817535921e-06!GO:0000139;Golgi membrane;5.09023163007186e-06!GO:0008654;phospholipid biosynthetic process;7.22304963451647e-06!GO:0016740;transferase activity;7.90752358283142e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;7.98943320432929e-06!GO:0009892;negative regulation of metabolic process;8.46383291225724e-06!GO:0006334;nucleosome assembly;9.00375419686309e-06!GO:0042981;regulation of apoptosis;1.02497871458967e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.14863673252866e-05!GO:0005525;GTP binding;1.15759636877888e-05!GO:0043067;regulation of programmed cell death;1.27958410010927e-05!GO:0005798;Golgi-associated vesicle;1.28822160952459e-05!GO:0045454;cell redox homeostasis;1.57992618460501e-05!GO:0051170;nuclear import;1.63557670701115e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.75414812063734e-05!GO:0016023;cytoplasmic membrane-bound vesicle;1.78210515277369e-05!GO:0045786;negative regulation of progression through cell cycle;1.85266355304006e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.87484873801207e-05!GO:0031988;membrane-bound vesicle;1.87631841332928e-05!GO:0000314;organellar small ribosomal subunit;1.87631841332928e-05!GO:0005763;mitochondrial small ribosomal subunit;1.87631841332928e-05!GO:0005770;late endosome;2.2023757968169e-05!GO:0031497;chromatin assembly;2.2023757968169e-05!GO:0043069;negative regulation of programmed cell death;2.41813309176268e-05!GO:0005813;centrosome;2.53215189419799e-05!GO:0032446;protein modification by small protein conjugation;3.0904311300718e-05!GO:0043066;negative regulation of apoptosis;3.09549033028731e-05!GO:0006606;protein import into nucleus;3.10920998168678e-05!GO:0016563;transcription activator activity;3.11804443251852e-05!GO:0043021;ribonucleoprotein binding;3.19883343965667e-05!GO:0003899;DNA-directed RNA polymerase activity;3.26296463018183e-05!GO:0003724;RNA helicase activity;3.4720788786391e-05!GO:0030867;rough endoplasmic reticulum membrane;3.70905686204707e-05!GO:0009165;nucleotide biosynthetic process;3.81577385478678e-05!GO:0015980;energy derivation by oxidation of organic compounds;4.04570215502401e-05!GO:0006916;anti-apoptosis;4.07820602269325e-05!GO:0016568;chromatin modification;4.18177154119668e-05!GO:0016567;protein ubiquitination;4.22436168395232e-05!GO:0016481;negative regulation of transcription;4.77319604068076e-05!GO:0019867;outer membrane;4.92218093297842e-05!GO:0043623;cellular protein complex assembly;5.38547406864327e-05!GO:0051028;mRNA transport;5.94408227007458e-05!GO:0005815;microtubule organizing center;6.07288305995268e-05!GO:0000151;ubiquitin ligase complex;6.09053985618585e-05!GO:0031968;organelle outer membrane;6.14132314529372e-05!GO:0051789;response to protein stimulus;6.45944963679737e-05!GO:0006986;response to unfolded protein;6.45944963679737e-05!GO:0033116;ER-Golgi intermediate compartment membrane;7.95139035769014e-05!GO:0003713;transcription coactivator activity;8.52764671755169e-05!GO:0032561;guanyl ribonucleotide binding;8.95997288463867e-05!GO:0019001;guanyl nucleotide binding;8.95997288463867e-05!GO:0031252;leading edge;9.00363576238268e-05!GO:0008361;regulation of cell size;9.33402028893193e-05!GO:0030133;transport vesicle;9.59178038819806e-05!GO:0006612;protein targeting to membrane;9.82153506418061e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000101190991779659!GO:0006261;DNA-dependent DNA replication;0.000103059584099425!GO:0016049;cell growth;0.000107232365726026!GO:0051329;interphase of mitotic cell cycle;0.000111924308499082!GO:0031982;vesicle;0.00011700562242668!GO:0005819;spindle;0.000117158743131067!GO:0006626;protein targeting to mitochondrion;0.000117955477437718!GO:0051427;hormone receptor binding;0.000121567105858318!GO:0005773;vacuole;0.000124077414688523!GO:0031410;cytoplasmic vesicle;0.000128865049202601!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000133672891839285!GO:0005769;early endosome;0.000133672891839285!GO:0001558;regulation of cell growth;0.000162483560648721!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000230490526116985!GO:0046474;glycerophospholipid biosynthetic process;0.000235241282970781!GO:0004576;oligosaccharyl transferase activity;0.000242926550298867!GO:0005741;mitochondrial outer membrane;0.000245061017621678!GO:0005048;signal sequence binding;0.00024859651856784!GO:0043681;protein import into mitochondrion;0.000250087130014913!GO:0035257;nuclear hormone receptor binding;0.00025806866876911!GO:0005905;coated pit;0.000298300818916548!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000301147520415057!GO:0030663;COPI coated vesicle membrane;0.000307265533048808!GO:0030126;COPI vesicle coat;0.000307265533048808!GO:0005885;Arp2/3 protein complex;0.000315193964565491!GO:0016126;sterol biosynthetic process;0.000328281965341105!GO:0007051;spindle organization and biogenesis;0.00033575856592558!GO:0008250;oligosaccharyl transferase complex;0.000340004698124282!GO:0000075;cell cycle checkpoint;0.000380441876581029!GO:0044452;nucleolar part;0.000403052460161939!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000417604271070859!GO:0051325;interphase;0.000429450089954133!GO:0050789;regulation of biological process;0.000435632701246103!GO:0003690;double-stranded DNA binding;0.000446561440170312!GO:0019843;rRNA binding;0.000457726890119427!GO:0008033;tRNA processing;0.000462169062276129!GO:0030036;actin cytoskeleton organization and biogenesis;0.00049354244556317!GO:0006793;phosphorus metabolic process;0.000523395234888426!GO:0006796;phosphate metabolic process;0.000523395234888426!GO:0000775;chromosome, pericentric region;0.000523807321611705!GO:0005657;replication fork;0.000533614664295929!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00054948421933423!GO:0000323;lytic vacuole;0.000593655289426091!GO:0005764;lysosome;0.000593655289426091!GO:0031072;heat shock protein binding;0.000593655289426091!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000613457330388948!GO:0006950;response to stress;0.000641053391019116!GO:0008094;DNA-dependent ATPase activity;0.000641053391019116!GO:0030880;RNA polymerase complex;0.000720283021499246!GO:0007010;cytoskeleton organization and biogenesis;0.000738990757431569!GO:0018196;peptidyl-asparagine modification;0.000739361936847169!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000739361936847169!GO:0008186;RNA-dependent ATPase activity;0.000763207029785077!GO:0005791;rough endoplasmic reticulum;0.000790281896100804!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000790281896100804!GO:0046483;heterocycle metabolic process;0.00082094168398671!GO:0044262;cellular carbohydrate metabolic process;0.000823184124956258!GO:0016363;nuclear matrix;0.000823184124956258!GO:0048522;positive regulation of cellular process;0.000845066916845299!GO:0051920;peroxiredoxin activity;0.000880875523596217!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000894867938930625!GO:0016310;phosphorylation;0.000895873358549748!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000939010258422597!GO:0030137;COPI-coated vesicle;0.000991085117721544!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00103502632056038!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00103502632056038!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00103502632056038!GO:0046489;phosphoinositide biosynthetic process;0.00103634611695932!GO:0048500;signal recognition particle;0.00106150215568663!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00106596864502777!GO:0006414;translational elongation;0.00119909471191315!GO:0006383;transcription from RNA polymerase III promoter;0.00123114718907292!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00130002784072855!GO:0019752;carboxylic acid metabolic process;0.00131348558963342!GO:0006082;organic acid metabolic process;0.00134069948950224!GO:0006891;intra-Golgi vesicle-mediated transport;0.00136967179796535!GO:0019222;regulation of metabolic process;0.00143622441984842!GO:0003729;mRNA binding;0.00145360123450606!GO:0006839;mitochondrial transport;0.00158038672696015!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00168868546883475!GO:0000428;DNA-directed RNA polymerase complex;0.00168868546883475!GO:0008610;lipid biosynthetic process;0.00170438271185212!GO:0030176;integral to endoplasmic reticulum membrane;0.00176310429385392!GO:0004004;ATP-dependent RNA helicase activity;0.00198225899597924!GO:0007006;mitochondrial membrane organization and biogenesis;0.0020426356926936!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00216750793696308!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00216750793696308!GO:0051168;nuclear export;0.00217304857551967!GO:0008180;signalosome;0.00217880191000417!GO:0008312;7S RNA binding;0.00222600423439475!GO:0030132;clathrin coat of coated pit;0.00223262650615036!GO:0005684;U2-dependent spliceosome;0.00228759522945059!GO:0007050;cell cycle arrest;0.00234466674509314!GO:0019899;enzyme binding;0.00243912345386395!GO:0051087;chaperone binding;0.00267979893662807!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00269321441305203!GO:0045047;protein targeting to ER;0.00269321441305203!GO:0030658;transport vesicle membrane;0.00274697362943826!GO:0030029;actin filament-based process;0.00285421974106839!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00297942167168101!GO:0000776;kinetochore;0.00299342198273702!GO:0003684;damaged DNA binding;0.00308921797123901!GO:0051252;regulation of RNA metabolic process;0.00309841798118444!GO:0008168;methyltransferase activity;0.00320988874993204!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00323384678216031!GO:0015992;proton transport;0.00323898123636747!GO:0006302;double-strand break repair;0.00328408385138866!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00334321782288617!GO:0015399;primary active transmembrane transporter activity;0.00334321782288617!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00334678055915353!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00334678055915353!GO:0006695;cholesterol biosynthetic process;0.00342971323324216!GO:0016741;transferase activity, transferring one-carbon groups;0.00344175011839299!GO:0006818;hydrogen transport;0.00349504348473994!GO:0050662;coenzyme binding;0.00374966728264208!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00397672704475791!GO:0015002;heme-copper terminal oxidase activity;0.00397672704475791!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00397672704475791!GO:0004129;cytochrome-c oxidase activity;0.00397672704475791!GO:0035258;steroid hormone receptor binding;0.00400793005291112!GO:0043488;regulation of mRNA stability;0.00401280100655657!GO:0043487;regulation of RNA stability;0.00401280100655657!GO:0030521;androgen receptor signaling pathway;0.00404953407428574!GO:0003678;DNA helicase activity;0.00405345286657877!GO:0046467;membrane lipid biosynthetic process;0.00409702733814707!GO:0007243;protein kinase cascade;0.00411379543325082!GO:0043284;biopolymer biosynthetic process;0.00435214016591835!GO:0000049;tRNA binding;0.00459791627260192!GO:0015631;tubulin binding;0.00461978853435199!GO:0030134;ER to Golgi transport vesicle;0.00470285637539811!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00471987443295446!GO:0006650;glycerophospholipid metabolic process;0.00471987443295446!GO:0051052;regulation of DNA metabolic process;0.00484563123021263!GO:0000786;nucleosome;0.00530702086151564!GO:0003746;translation elongation factor activity;0.00532698261921252!GO:0016251;general RNA polymerase II transcription factor activity;0.00532698261921252!GO:0006595;polyamine metabolic process;0.00534928247634037!GO:0030127;COPII vesicle coat;0.0056671810181843!GO:0012507;ER to Golgi transport vesicle membrane;0.0056671810181843!GO:0003711;transcription elongation regulator activity;0.0056671810181843!GO:0007088;regulation of mitosis;0.00568007312463788!GO:0005869;dynactin complex;0.0056882739511463!GO:0065009;regulation of a molecular function;0.00569248656371199!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00570576761402068!GO:0048144;fibroblast proliferation;0.00570576761402068!GO:0048145;regulation of fibroblast proliferation;0.00570576761402068!GO:0009112;nucleobase metabolic process;0.00573060709037674!GO:0016408;C-acyltransferase activity;0.00573959313476436!GO:0048471;perinuclear region of cytoplasm;0.00602071757369539!GO:0017166;vinculin binding;0.00605826452371663!GO:0016044;membrane organization and biogenesis;0.0060646759602773!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0061507602366405!GO:0016197;endosome transport;0.006184943512689!GO:0016272;prefoldin complex;0.00627484177363002!GO:0000082;G1/S transition of mitotic cell cycle;0.00628062090352546!GO:0000059;protein import into nucleus, docking;0.00629915262246512!GO:0031901;early endosome membrane;0.00637120922715646!GO:0004177;aminopeptidase activity;0.00639638582904848!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00647559397167863!GO:0022890;inorganic cation transmembrane transporter activity;0.00655994858473012!GO:0042802;identical protein binding;0.00657884889924335!GO:0006520;amino acid metabolic process;0.00658052502566072!GO:0006118;electron transport;0.00690585060833925!GO:0045892;negative regulation of transcription, DNA-dependent;0.0069787278384878!GO:0043022;ribosome binding;0.00726473297280451!GO:0000339;RNA cap binding;0.00735882838560928!GO:0006497;protein amino acid lipidation;0.00735882838560928!GO:0005758;mitochondrial intermembrane space;0.00738211452759713!GO:0030660;Golgi-associated vesicle membrane;0.00764303032960304!GO:0006740;NADPH regeneration;0.00778129640620788!GO:0006098;pentose-phosphate shunt;0.00778129640620788!GO:0032984;macromolecular complex disassembly;0.00788435641490747!GO:0006352;transcription initiation;0.00794464051270977!GO:0006402;mRNA catabolic process;0.00807043188082676!GO:0048146;positive regulation of fibroblast proliferation;0.00816707896668509!GO:0048487;beta-tubulin binding;0.00875925932081298!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00922522237104481!GO:0004527;exonuclease activity;0.00961869391959774!GO:0045045;secretory pathway;0.00998206037212368!GO:0006506;GPI anchor biosynthetic process;0.0101048836781182!GO:0009116;nucleoside metabolic process;0.0103721931816842!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0106714081739949!GO:0040008;regulation of growth;0.0107810353013074!GO:0030659;cytoplasmic vesicle membrane;0.0108097910619187!GO:0006778;porphyrin metabolic process;0.0108390873338833!GO:0033013;tetrapyrrole metabolic process;0.0108390873338833!GO:0030118;clathrin coat;0.0109904870562609!GO:0050681;androgen receptor binding;0.0110809608640835!GO:0008047;enzyme activator activity;0.0111344696605153!GO:0051287;NAD binding;0.0112650880669952!GO:0008243;plasminogen activator activity;0.011435202812586!GO:0031124;mRNA 3'-end processing;0.0115414494819243!GO:0030145;manganese ion binding;0.0118143602284948!GO:0030518;steroid hormone receptor signaling pathway;0.0118184347659243!GO:0005862;muscle thin filament tropomyosin;0.0118765891843918!GO:0005832;chaperonin-containing T-complex;0.0122434913718986!GO:0007052;mitotic spindle organization and biogenesis;0.0122629538874958!GO:0007093;mitotic cell cycle checkpoint;0.0128454111581009!GO:0008139;nuclear localization sequence binding;0.0128569838480779!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0129017853067482!GO:0006007;glucose catabolic process;0.0129329383286311!GO:0006505;GPI anchor metabolic process;0.013059729730543!GO:0006401;RNA catabolic process;0.0131701448780517!GO:0043624;cellular protein complex disassembly;0.0134206404839173!GO:0006979;response to oxidative stress;0.0135065710638371!GO:0048037;cofactor binding;0.0135065710638371!GO:0031529;ruffle organization and biogenesis;0.0135669724311833!GO:0031970;organelle envelope lumen;0.0136202548989119!GO:0043241;protein complex disassembly;0.0137221327916019!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0137522520700785!GO:0008632;apoptotic program;0.0137554235033299!GO:0008092;cytoskeletal protein binding;0.0138007513705049!GO:0005637;nuclear inner membrane;0.0138007513705049!GO:0042158;lipoprotein biosynthetic process;0.0138071939680977!GO:0008652;amino acid biosynthetic process;0.0138548115486812!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0145467691420398!GO:0006509;membrane protein ectodomain proteolysis;0.0152475766485456!GO:0033619;membrane protein proteolysis;0.0152475766485456!GO:0043433;negative regulation of transcription factor activity;0.0153300520900828!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0153300520900828!GO:0007021;tubulin folding;0.0157373825662841!GO:0006275;regulation of DNA replication;0.0159793820174814!GO:0031902;late endosome membrane;0.0161499703154321!GO:0006289;nucleotide-excision repair;0.0162299997070995!GO:0030125;clathrin vesicle coat;0.0162299997070995!GO:0030665;clathrin coated vesicle membrane;0.0162299997070995!GO:0006733;oxidoreduction coenzyme metabolic process;0.0162833252058912!GO:0003682;chromatin binding;0.0163180662780469!GO:0030027;lamellipodium;0.0163688250934587!GO:0032508;DNA duplex unwinding;0.0163688250934587!GO:0032392;DNA geometric change;0.0163688250934587!GO:0051539;4 iron, 4 sulfur cluster binding;0.016539155026528!GO:0001527;microfibril;0.0168254453648953!GO:0000209;protein polyubiquitination;0.0168512929495296!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0169437821228825!GO:0004003;ATP-dependent DNA helicase activity;0.0172295326498803!GO:0006144;purine base metabolic process;0.0173259868340469!GO:0030384;phosphoinositide metabolic process;0.0173791370705158!GO:0001726;ruffle;0.0179490253620695!GO:0008022;protein C-terminus binding;0.0184788542969329!GO:0045941;positive regulation of transcription;0.0185549234387248!GO:0016407;acetyltransferase activity;0.0187266926844908!GO:0042168;heme metabolic process;0.0187316372949845!GO:0051540;metal cluster binding;0.0189239307830987!GO:0051536;iron-sulfur cluster binding;0.0189239307830987!GO:0009124;nucleoside monophosphate biosynthetic process;0.0189788649770624!GO:0009123;nucleoside monophosphate metabolic process;0.0189788649770624!GO:0044433;cytoplasmic vesicle part;0.0189945830726611!GO:0019798;procollagen-proline dioxygenase activity;0.0192087631873328!GO:0000096;sulfur amino acid metabolic process;0.0194393264441432!GO:0016860;intramolecular oxidoreductase activity;0.0195035123685105!GO:0031543;peptidyl-proline dioxygenase activity;0.0195096357324235!GO:0031418;L-ascorbic acid binding;0.0196643151400722!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0197447822453195!GO:0030433;ER-associated protein catabolic process;0.0198973170186218!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0198973170186218!GO:0005586;collagen type III;0.0204554701758873!GO:0003756;protein disulfide isomerase activity;0.020640056946627!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.020640056946627!GO:0006769;nicotinamide metabolic process;0.0206490769359373!GO:0007264;small GTPase mediated signal transduction;0.0207652461019592!GO:0009303;rRNA transcription;0.0208865642643231!GO:0006268;DNA unwinding during replication;0.0216864507612923!GO:0048518;positive regulation of biological process;0.0220125573384711!GO:0005801;cis-Golgi network;0.0221289324849602!GO:0006220;pyrimidine nucleotide metabolic process;0.022445132588531!GO:0030041;actin filament polymerization;0.0229466042297163!GO:0045893;positive regulation of transcription, DNA-dependent;0.0234439479673848!GO:0006378;mRNA polyadenylation;0.0241952579899972!GO:0030508;thiol-disulfide exchange intermediate activity;0.0244563715533384!GO:0009451;RNA modification;0.0245520028205535!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0251676517888317!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0251676517888317!GO:0043492;ATPase activity, coupled to movement of substances;0.0255683668032498!GO:0005583;fibrillar collagen;0.0256107050717745!GO:0005669;transcription factor TFIID complex;0.0266769559422275!GO:0012506;vesicle membrane;0.027072539752492!GO:0051128;regulation of cellular component organization and biogenesis;0.0277166595557196!GO:0031371;ubiquitin conjugating enzyme complex;0.0277567104565433!GO:0009967;positive regulation of signal transduction;0.0287323837863375!GO:0006417;regulation of translation;0.0288998719246276!GO:0006611;protein export from nucleus;0.0291024694666455!GO:0043414;biopolymer methylation;0.029358955999657!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0300740668975779!GO:0006892;post-Golgi vesicle-mediated transport;0.0303871275248596!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0305470379648717!GO:0006739;NADP metabolic process;0.0308579291550936!GO:0009161;ribonucleoside monophosphate metabolic process;0.0313760832702488!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0313760832702488!GO:0006376;mRNA splice site selection;0.0314084928974417!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0314084928974417!GO:0004448;isocitrate dehydrogenase activity;0.0317473257785723!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0320010917085402!GO:0008320;protein transmembrane transporter activity;0.0322534199537911!GO:0004287;prolyl oligopeptidase activity;0.0334814410616622!GO:0004518;nuclease activity;0.0339341968304248!GO:0006354;RNA elongation;0.0341067979867232!GO:0005874;microtubule;0.034118479769231!GO:0006310;DNA recombination;0.0345922435511397!GO:0006779;porphyrin biosynthetic process;0.0347237981312402!GO:0033014;tetrapyrrole biosynthetic process;0.0347237981312402!GO:0008154;actin polymerization and/or depolymerization;0.0348226723141555!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0348359484025122!GO:0007034;vacuolar transport;0.0349986370840914!GO:0009225;nucleotide-sugar metabolic process;0.0351230391200558!GO:0051101;regulation of DNA binding;0.0351230391200558!GO:0047485;protein N-terminus binding;0.0355759683544002!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0359014281678397!GO:0031123;RNA 3'-end processing;0.0359633903692129!GO:0022411;cellular component disassembly;0.0359693476542975!GO:0008538;proteasome activator activity;0.0361604867763161!GO:0032259;methylation;0.0368112952793195!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0369242460741894!GO:0000792;heterochromatin;0.0369250519313465!GO:0065007;biological regulation;0.0370006664987432!GO:0042770;DNA damage response, signal transduction;0.0374116096054353!GO:0006790;sulfur metabolic process;0.0374116096054353!GO:0015036;disulfide oxidoreductase activity;0.0374116096054353!GO:0019206;nucleoside kinase activity;0.0374116096054353!GO:0031323;regulation of cellular metabolic process;0.0374116096054353!GO:0030911;TPR domain binding;0.0375252754901847!GO:0050811;GABA receptor binding;0.0379486712251653!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0384780504419248!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0384780504419248!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.038746631572523!GO:0000030;mannosyltransferase activity;0.038746631572523!GO:0022884;macromolecule transmembrane transporter activity;0.0388116589527637!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0388116589527637!GO:0000178;exosome (RNase complex);0.0390697325751699!GO:0005850;eukaryotic translation initiation factor 2 complex;0.039245936193508!GO:0006767;water-soluble vitamin metabolic process;0.0393283555979358!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.040989393151981!GO:0030119;AP-type membrane coat adaptor complex;0.0413037792041002!GO:0030522;intracellular receptor-mediated signaling pathway;0.041672772147645!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0417605172981563!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0420250580896508!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0430866662191137!GO:0045039;protein import into mitochondrial inner membrane;0.0430866662191137!GO:0006405;RNA export from nucleus;0.0432384629693491!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0439016115180116!GO:0030032;lamellipodium biogenesis;0.0440337898715426!GO:0007040;lysosome organization and biogenesis;0.0440337898715426!GO:0043189;H4/H2A histone acetyltransferase complex;0.0440397226071145!GO:0007030;Golgi organization and biogenesis;0.0447158753090998!GO:0009119;ribonucleoside metabolic process;0.0448135540523096!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0450695454934008!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0451235793363447!GO:0033673;negative regulation of kinase activity;0.0451506415739587!GO:0006469;negative regulation of protein kinase activity;0.0451506415739587!GO:0005784;translocon complex;0.0453850873356462!GO:0043065;positive regulation of apoptosis;0.0458376146466608!GO:0022408;negative regulation of cell-cell adhesion;0.0460032693599515!GO:0008097;5S rRNA binding;0.0462614100935212!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0464962760287467!GO:0010257;NADH dehydrogenase complex assembly;0.0464962760287467!GO:0033108;mitochondrial respiratory chain complex assembly;0.0464962760287467!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0465165225413047!GO:0032940;secretion by cell;0.0470893586785193!GO:0035267;NuA4 histone acetyltransferase complex;0.0471989689763526!GO:0005774;vacuolar membrane;0.0474139468319215!GO:0045792;negative regulation of cell size;0.0474493152225393!GO:0003923;GPI-anchor transamidase activity;0.0487358402669408!GO:0016255;attachment of GPI anchor to protein;0.0487358402669408!GO:0042765;GPI-anchor transamidase complex;0.0487358402669408!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0490053006209271 | |||
|sample_id=11747 | |sample_id=11747 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=adipose tissue | |sample_tissue=adipose tissue | ||
|top_motifs=ALX4:1.9754647024;ZNF238:1.93358981792;EN1,2:1.55191282013;HOX{A5,B5}:1.37280846688;TAL1_TCF{3,4,12}:1.23457441364;PAX8:1.19253168077;ATF6:1.12308745416;UFEwm:1.12171807663;GZF1:1.06505712978;YY1:1.05203897644;NKX3-1:1.05175652728;GLI1..3:1.04829806974;ESR1:1.02894654502;HES1:0.946245269817;NFIX:0.919237891166;GFI1B:0.888619277193;KLF4:0.849296111585;MYBL2:0.841285000111;EVI1:0.768349788142;NKX2-2,8:0.756233536877;NFATC1..3:0.752472492551;NR3C1:0.744652577451;ZNF384:0.721094991362;TEF:0.718668001636;EBF1:0.696949104077;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.691042120706;NANOG{mouse}:0.688595815154;PAX4:0.68835056042;HSF1,2:0.68833058419;IKZF1:0.670373586847;ALX1:0.662710235144;PAX1,9:0.65891669721;TLX1..3_NFIC{dimer}:0.650451030059;HOX{A4,D4}:0.610115708396;SRF:0.60475202765;ZIC1..3:0.599701314121;MAFB:0.565970741707;NFE2L2:0.562121488709;ARID5B:0.561814822413;TEAD1:0.54421531341;NR6A1:0.50720805543;XBP1:0.482236316438;GTF2I:0.459427470588;SOX17:0.458326598306;BACH2:0.438944667436;DBP:0.434594757982;AR:0.427443312038;GFI1:0.426503873424;LHX3,4:0.392860917009;TBX4,5:0.391662775681;ELK1,4_GABP{A,B1}:0.386829667008;GATA4:0.369633843735;NKX6-1,2:0.365802521878;HAND1,2:0.365781775245;PRDM1:0.3640320543;STAT2,4,6:0.353945989831;FOS_FOS{B,L1}_JUN{B,D}:0.349712612758;PDX1:0.340215319193;TFCP2:0.338562160714;TP53:0.338127881342;HIF1A:0.327143365096;RFX1:0.31847526078;TLX2:0.312643741405;NKX3-2:0.30950534868;MZF1:0.301404508216;ESRRA:0.297658579601;ZNF423:0.295377094376;FOX{I1,J2}:0.294366616734;AIRE:0.287743360346;HLF:0.285997700179;TBP:0.281269514131;CDC5L:0.281255518602;SPZ1:0.257696973031;RXR{A,B,G}:0.251932616504;RXRA_VDR{dimer}:0.230417157462;E2F1..5:0.202542871776;GTF2A1,2:0.200528501291;NFE2L1:0.170225250506;ZBTB6:0.134591402107;GCM1,2:0.131411645033;PRRX1,2:0.123946101042;PBX1:0.117181643981;STAT1,3:0.11343543196;ZNF143:0.0993527191235;NRF1:0.0938953394994;POU3F1..4:0.0933232900318;ZNF148:0.063959563785;FOXM1:0.0596931919625;PAX5:0.0524158620677;RUNX1..3:0.0506115738806;NR5A1,2:0.0497258337716;TFDP1:0.0409630091408;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0377698115407;PATZ1:0.037290831195;AHR_ARNT_ARNT2:0.0275287694131;NR1H4:0.0245291824003;TFAP4:-0.00721363292808;ELF1,2,4:-0.00732946127601;HNF1A:-0.0083599447727;HBP1_HMGB_SSRP1_UBTF:-0.0187143679565;POU6F1:-0.0207954872656;XCPE1{core}:-0.0213403697739;bHLH_family:-0.0304205765368;MYB:-0.036213336923;NFE2:-0.0376204736293;FOSL2:-0.0397253543033;MTE{core}:-0.0399075807616;EGR1..3:-0.0445373030816;FOXL1:-0.0472047378741;SMAD1..7,9:-0.050112207138;HMGA1,2:-0.0648639762597;TFAP2B:-0.0789564833651;RREB1:-0.0841381558033;JUN:-0.10250822685;FOXD3:-0.105798045487;MAZ:-0.140163032308;PAX2:-0.140311592622;ONECUT1,2:-0.146443708311;PAX3,7:-0.179072089462;NFIL3:-0.183620727608;LEF1_TCF7_TCF7L1,2:-0.185190799248;NKX2-1,4:-0.199426322056;CREB1:-0.201873479606;ZBTB16:-0.218840105846;HMX1:-0.223024277019;NFY{A,B,C}:-0.225463123123;TOPORS:-0.232669764212;REST:-0.249146775912;CEBPA,B_DDIT3:-0.250810037776;IRF1,2:-0.265940203346;HOX{A6,A7,B6,B7}:-0.271196283656;MYFfamily:-0.280636291262;NHLH1,2:-0.285902093093;RFX2..5_RFXANK_RFXAP:-0.290221052918;MEF2{A,B,C,D}:-0.32225269386;TFAP2{A,C}:-0.33565763453;DMAP1_NCOR{1,2}_SMARC:-0.360605441976;HNF4A_NR2F1,2:-0.363135572632;BPTF:-0.372680572829;OCT4_SOX2{dimer}:-0.37546572071;POU5F1:-0.376019789847;SOX{8,9,10}:-0.393458440138;CDX1,2,4:-0.39357823498;POU2F1..3:-0.393870127753;CRX:-0.394297701581;ATF5_CREB3:-0.397524651505;SOX5:-0.412845468832;NFKB1_REL_RELA:-0.41630750995;SPI1:-0.423870502499;MED-1{core}:-0.461389398062;MTF1:-0.464087227558;NKX2-3_NKX2-5:-0.492882385269;FOXO1,3,4:-0.493302497905;HIC1:-0.498883263572;FOXP3:-0.547912629038;STAT5{A,B}:-0.547987779049;ETS1,2:-0.550700729558;SPIB:-0.55217351949;VSX1,2:-0.560085472149;FOXQ1:-0.571302327925;HOXA9_MEIS1:-0.572415027895;IKZF2:-0.574108341445;ATF4:-0.57946903053;T:-0.579662675169;SOX2:-0.609423488268;IRF7:-0.612523970774;TGIF1:-0.619871997441;GATA6:-0.63261226133;POU1F1:-0.635784988185;BREu{core}:-0.682267015377;ATF2:-0.69136056659;FOXP1:-0.705188931801;EP300:-0.709244009847;PAX6:-0.725922015015;RORA:-0.729790669685;RBPJ:-0.731364552206;CUX2:-0.739781985081;ADNP_IRX_SIX_ZHX:-0.742120394221;ZFP161:-0.757257641922;FOXA2:-0.782612339894;LMO2:-0.817461174914;SP1:-0.857281341256;NANOG:-0.868768730722;SNAI1..3:-0.869225897325;FOX{D1,D2}:-0.920511272708;PPARG:-0.939518979919;FOXN1:-0.970680526236;ZEB1:-0.983747617607;SREBF1,2:-0.986615215937;PITX1..3:-1.21701195694;FOX{F1,F2,J1}:-1.39634183299;MYOD1:-1.65781216513 | |top_motifs=ALX4:1.9754647024;ZNF238:1.93358981792;EN1,2:1.55191282013;HOX{A5,B5}:1.37280846688;TAL1_TCF{3,4,12}:1.23457441364;PAX8:1.19253168077;ATF6:1.12308745416;UFEwm:1.12171807663;GZF1:1.06505712978;YY1:1.05203897644;NKX3-1:1.05175652728;GLI1..3:1.04829806974;ESR1:1.02894654502;HES1:0.946245269817;NFIX:0.919237891166;GFI1B:0.888619277193;KLF4:0.849296111585;MYBL2:0.841285000111;EVI1:0.768349788142;NKX2-2,8:0.756233536877;NFATC1..3:0.752472492551;NR3C1:0.744652577451;ZNF384:0.721094991362;TEF:0.718668001636;EBF1:0.696949104077;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.691042120706;NANOG{mouse}:0.688595815154;PAX4:0.68835056042;HSF1,2:0.68833058419;IKZF1:0.670373586847;ALX1:0.662710235144;PAX1,9:0.65891669721;TLX1..3_NFIC{dimer}:0.650451030059;HOX{A4,D4}:0.610115708396;SRF:0.60475202765;ZIC1..3:0.599701314121;MAFB:0.565970741707;NFE2L2:0.562121488709;ARID5B:0.561814822413;TEAD1:0.54421531341;NR6A1:0.50720805543;XBP1:0.482236316438;GTF2I:0.459427470588;SOX17:0.458326598306;BACH2:0.438944667436;DBP:0.434594757982;AR:0.427443312038;GFI1:0.426503873424;LHX3,4:0.392860917009;TBX4,5:0.391662775681;ELK1,4_GABP{A,B1}:0.386829667008;GATA4:0.369633843735;NKX6-1,2:0.365802521878;HAND1,2:0.365781775245;PRDM1:0.3640320543;STAT2,4,6:0.353945989831;FOS_FOS{B,L1}_JUN{B,D}:0.349712612758;PDX1:0.340215319193;TFCP2:0.338562160714;TP53:0.338127881342;HIF1A:0.327143365096;RFX1:0.31847526078;TLX2:0.312643741405;NKX3-2:0.30950534868;MZF1:0.301404508216;ESRRA:0.297658579601;ZNF423:0.295377094376;FOX{I1,J2}:0.294366616734;AIRE:0.287743360346;HLF:0.285997700179;TBP:0.281269514131;CDC5L:0.281255518602;SPZ1:0.257696973031;RXR{A,B,G}:0.251932616504;RXRA_VDR{dimer}:0.230417157462;E2F1..5:0.202542871776;GTF2A1,2:0.200528501291;NFE2L1:0.170225250506;ZBTB6:0.134591402107;GCM1,2:0.131411645033;PRRX1,2:0.123946101042;PBX1:0.117181643981;STAT1,3:0.11343543196;ZNF143:0.0993527191235;NRF1:0.0938953394994;POU3F1..4:0.0933232900318;ZNF148:0.063959563785;FOXM1:0.0596931919625;PAX5:0.0524158620677;RUNX1..3:0.0506115738806;NR5A1,2:0.0497258337716;TFDP1:0.0409630091408;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0377698115407;PATZ1:0.037290831195;AHR_ARNT_ARNT2:0.0275287694131;NR1H4:0.0245291824003;TFAP4:-0.00721363292808;ELF1,2,4:-0.00732946127601;HNF1A:-0.0083599447727;HBP1_HMGB_SSRP1_UBTF:-0.0187143679565;POU6F1:-0.0207954872656;XCPE1{core}:-0.0213403697739;bHLH_family:-0.0304205765368;MYB:-0.036213336923;NFE2:-0.0376204736293;FOSL2:-0.0397253543033;MTE{core}:-0.0399075807616;EGR1..3:-0.0445373030816;FOXL1:-0.0472047378741;SMAD1..7,9:-0.050112207138;HMGA1,2:-0.0648639762597;TFAP2B:-0.0789564833651;RREB1:-0.0841381558033;JUN:-0.10250822685;FOXD3:-0.105798045487;MAZ:-0.140163032308;PAX2:-0.140311592622;ONECUT1,2:-0.146443708311;PAX3,7:-0.179072089462;NFIL3:-0.183620727608;LEF1_TCF7_TCF7L1,2:-0.185190799248;NKX2-1,4:-0.199426322056;CREB1:-0.201873479606;ZBTB16:-0.218840105846;HMX1:-0.223024277019;NFY{A,B,C}:-0.225463123123;TOPORS:-0.232669764212;REST:-0.249146775912;CEBPA,B_DDIT3:-0.250810037776;IRF1,2:-0.265940203346;HOX{A6,A7,B6,B7}:-0.271196283656;MYFfamily:-0.280636291262;NHLH1,2:-0.285902093093;RFX2..5_RFXANK_RFXAP:-0.290221052918;MEF2{A,B,C,D}:-0.32225269386;TFAP2{A,C}:-0.33565763453;DMAP1_NCOR{1,2}_SMARC:-0.360605441976;HNF4A_NR2F1,2:-0.363135572632;BPTF:-0.372680572829;OCT4_SOX2{dimer}:-0.37546572071;POU5F1:-0.376019789847;SOX{8,9,10}:-0.393458440138;CDX1,2,4:-0.39357823498;POU2F1..3:-0.393870127753;CRX:-0.394297701581;ATF5_CREB3:-0.397524651505;SOX5:-0.412845468832;NFKB1_REL_RELA:-0.41630750995;SPI1:-0.423870502499;MED-1{core}:-0.461389398062;MTF1:-0.464087227558;NKX2-3_NKX2-5:-0.492882385269;FOXO1,3,4:-0.493302497905;HIC1:-0.498883263572;FOXP3:-0.547912629038;STAT5{A,B}:-0.547987779049;ETS1,2:-0.550700729558;SPIB:-0.55217351949;VSX1,2:-0.560085472149;FOXQ1:-0.571302327925;HOXA9_MEIS1:-0.572415027895;IKZF2:-0.574108341445;ATF4:-0.57946903053;T:-0.579662675169;SOX2:-0.609423488268;IRF7:-0.612523970774;TGIF1:-0.619871997441;GATA6:-0.63261226133;POU1F1:-0.635784988185;BREu{core}:-0.682267015377;ATF2:-0.69136056659;FOXP1:-0.705188931801;EP300:-0.709244009847;PAX6:-0.725922015015;RORA:-0.729790669685;RBPJ:-0.731364552206;CUX2:-0.739781985081;ADNP_IRX_SIX_ZHX:-0.742120394221;ZFP161:-0.757257641922;FOXA2:-0.782612339894;LMO2:-0.817461174914;SP1:-0.857281341256;NANOG:-0.868768730722;SNAI1..3:-0.869225897325;FOX{D1,D2}:-0.920511272708;PPARG:-0.939518979919;FOXN1:-0.970680526236;ZEB1:-0.983747617607;SREBF1,2:-0.986615215937;PITX1..3:-1.21701195694;FOX{F1,F2,J1}:-1.39634183299;MYOD1:-1.65781216513 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11747-123G1;search_select_hide=table117:FF:11747-123G1 | |||
}} | }} | ||
Latest revision as of 18:17, 4 June 2020
| Name: | mesenchymal precursor cell - adipose, donor1 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12363 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12363
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12363
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.237 |
| 10 | 10 | 0.0965 |
| 100 | 100 | 0.973 |
| 101 | 101 | 0.581 |
| 102 | 102 | 0.136 |
| 103 | 103 | 0.112 |
| 104 | 104 | 0.701 |
| 105 | 105 | 0.0393 |
| 106 | 106 | 0.941 |
| 107 | 107 | 0.38 |
| 108 | 108 | 0.633 |
| 109 | 109 | 0.278 |
| 11 | 11 | 0.228 |
| 110 | 110 | 0.0365 |
| 111 | 111 | 0.697 |
| 112 | 112 | 0.225 |
| 113 | 113 | 0.00153 |
| 114 | 114 | 0.256 |
| 115 | 115 | 0.152 |
| 116 | 116 | 0.0263 |
| 117 | 117 | 0.0923 |
| 118 | 118 | 0.735 |
| 119 | 119 | 0.904 |
| 12 | 12 | 0.614 |
| 120 | 120 | 0.134 |
| 121 | 121 | 0.683 |
| 122 | 122 | 0.0169 |
| 123 | 123 | 6.25455e-4 |
| 124 | 124 | 0.396 |
| 125 | 125 | 0.474 |
| 126 | 126 | 0.859 |
| 127 | 127 | 0.928 |
| 128 | 128 | 0.898 |
| 129 | 129 | 0.948 |
| 13 | 13 | 0.266 |
| 130 | 130 | 0.447 |
| 131 | 131 | 0.542 |
| 132 | 132 | 0.901 |
| 133 | 133 | 0.414 |
| 134 | 134 | 0.226 |
| 135 | 135 | 0.964 |
| 136 | 136 | 0.829 |
| 137 | 137 | 0.757 |
| 138 | 138 | 0.761 |
| 139 | 139 | 0.846 |
| 14 | 14 | 0.0715 |
| 140 | 140 | 0.97 |
| 141 | 141 | 0.871 |
| 142 | 142 | 0.79 |
| 143 | 143 | 0.303 |
| 144 | 144 | 0.702 |
| 145 | 145 | 0.732 |
| 146 | 146 | 0.776 |
| 147 | 147 | 0.0635 |
| 148 | 148 | 0.991 |
| 149 | 149 | 0.267 |
| 15 | 15 | 0.675 |
| 150 | 150 | 0.258 |
| 151 | 151 | 0.684 |
| 152 | 152 | 0.288 |
| 153 | 153 | 0.777 |
| 154 | 154 | 0.922 |
| 155 | 155 | 0.0273 |
| 156 | 156 | 0.364 |
| 157 | 157 | 0.604 |
| 158 | 158 | 0.00144 |
| 159 | 159 | 0.126 |
| 16 | 16 | 0.0177 |
| 160 | 160 | 0.463 |
| 161 | 161 | 0.423 |
| 162 | 162 | 0.507 |
| 163 | 163 | 0.973 |
| 164 | 164 | 0.133 |
| 165 | 165 | 0.829 |
| 166 | 166 | 0.511 |
| 167 | 167 | 0.833 |
| 168 | 168 | 0.679 |
| 169 | 169 | 0.00582 |
| 17 | 17 | 0.391 |
| 18 | 18 | 0.0276 |
| 19 | 19 | 0.0106 |
| 2 | 2 | 0.346 |
| 20 | 20 | 0.443 |
| 21 | 21 | 0.0279 |
| 22 | 22 | 0.293 |
| 23 | 23 | 0.88 |
| 24 | 24 | 0.853 |
| 25 | 25 | 0.518 |
| 26 | 26 | 0.186 |
| 27 | 27 | 0.555 |
| 28 | 28 | 0.339 |
| 29 | 29 | 0.126 |
| 3 | 3 | 0.212 |
| 30 | 30 | 0.49 |
| 31 | 31 | 0.757 |
| 32 | 32 | 1.8977e-12 |
| 33 | 33 | 0.886 |
| 34 | 34 | 0.512 |
| 35 | 35 | 0.546 |
| 36 | 36 | 0.0483 |
| 37 | 37 | 0.0768 |
| 38 | 38 | 0.434 |
| 39 | 39 | 0.115 |
| 4 | 4 | 0.486 |
| 40 | 40 | 0.175 |
| 41 | 41 | 0.221 |
| 42 | 42 | 0.612 |
| 43 | 43 | 0.431 |
| 44 | 44 | 0.482 |
| 45 | 45 | 0.689 |
| 46 | 46 | 0.202 |
| 47 | 47 | 0.528 |
| 48 | 48 | 0.342 |
| 49 | 49 | 0.716 |
| 5 | 5 | 0.857 |
| 50 | 50 | 0.646 |
| 51 | 51 | 0.732 |
| 52 | 52 | 0.606 |
| 53 | 53 | 0.0533 |
| 54 | 54 | 0.837 |
| 55 | 55 | 0.492 |
| 56 | 56 | 0.948 |
| 57 | 57 | 0.919 |
| 58 | 58 | 0.431 |
| 59 | 59 | 0.0901 |
| 6 | 6 | 0.214 |
| 60 | 60 | 0.836 |
| 61 | 61 | 0.558 |
| 62 | 62 | 0.719 |
| 63 | 63 | 0.607 |
| 64 | 64 | 0.875 |
| 65 | 65 | 0.704 |
| 66 | 66 | 0.871 |
| 67 | 67 | 0.435 |
| 68 | 68 | 0.32 |
| 69 | 69 | 0.666 |
| 7 | 7 | 0.593 |
| 70 | 70 | 0.784 |
| 71 | 71 | 0.0347 |
| 72 | 72 | 0.918 |
| 73 | 73 | 0.139 |
| 74 | 74 | 0.142 |
| 75 | 75 | 0.076 |
| 76 | 76 | 0.94 |
| 77 | 77 | 0.00632 |
| 78 | 78 | 0.103 |
| 79 | 79 | 0.028 |
| 8 | 8 | 0.0224 |
| 80 | 80 | 0.831 |
| 81 | 81 | 0.396 |
| 82 | 82 | 0.734 |
| 83 | 83 | 0.947 |
| 84 | 84 | 0.822 |
| 85 | 85 | 0.726 |
| 86 | 86 | 0.395 |
| 87 | 87 | 0.109 |
| 88 | 88 | 0.694 |
| 89 | 89 | 0.0878 |
| 9 | 9 | 0.308 |
| 90 | 90 | 0.824 |
| 91 | 91 | 0.621 |
| 92 | 92 | 0.69 |
| 93 | 93 | 0.359 |
| 94 | 94 | 0.401 |
| 95 | 95 | 0.0903 |
| 96 | 96 | 0.964 |
| 97 | 97 | 0.654 |
| 98 | 98 | 0.18 |
| 99 | 99 | 0.00607 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12363
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002570 (mesenchymal stem cell of adipose)
UBERON: Anatomy
0001013 (adipose tissue)
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000270 (mesenchymal precursor cell of adipose)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
