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FFCP PHASE1:Mm9::chr15:89330029..89330084,+: Difference between revisions

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{{FFCP
{{FFCP
|DHSsupport=NA
|DPIdataset=NA
|EntrezGene=58234
|EntrezGene=58234
|HGNC=
|HGNC=
|MCL_coexpression_id=2
|TSSclassifier=NA
|UniProt=Q4ACU6
|UniProt=Q4ACU6
|association_with_transcript=0bp_to_ENSMUST00000109309_5end
|association_with_transcript=0bp_to_ENSMUST00000109309_5end
|cluster_id=chr15:89330029..89330084,+
|description=CAGE_peak_1_at_Shank3_5end
|description=CAGE_peak_1_at_Shank3_5end
|id=chr15:89330029..89330084,+
|id=chr15:89330029..89330084,+
|ontology_enrichment_celltype=CL:0000117!3.32e-10!23;CL:0000337!3.32e-10!23;CL:0002319!2.51e-07!43;CL:0000221!4.09e-07!44;CL:0000133!4.09e-07!44
|ontology_enrichment_celltype=CL:0000117!3.32e-10!23;CL:0000337!3.32e-10!23;CL:0002319!2.51e-07!43;CL:0000221!4.09e-07!44;CL:0000133!4.09e-07!44
|ontology_enrichment_celltype_v019_2=CL:0000117,6.09e-11,23;CL:0000337,6.09e-11,23;CL:0002319,3.26e-08,43;CL:0000221,9.60e-08,44;CL:0000133,9.60e-08,44
|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0001049!4.72e-24!52;UBERON:0005068!4.72e-24!52;UBERON:0006241!4.72e-24!52;UBERON:0007135!4.72e-24!52;UBERON:0001017!1.83e-23!73;UBERON:0005743!1.83e-23!73;UBERON:0000955!4.05e-23!50;UBERON:0006238!4.05e-23!50;UBERON:0002616!1.74e-22!49;UBERON:0000073!3.01e-22!75;UBERON:0001016!3.01e-22!75;UBERON:0000033!3.41e-20!63;UBERON:0002346!4.10e-20!71;UBERON:0003075!4.10e-20!71;UBERON:0007284!4.10e-20!71;UBERON:0002020!6.96e-18!34;UBERON:0003080!8.58e-18!40;UBERON:0002780!3.11e-17!39;UBERON:0001890!3.11e-17!39;UBERON:0006240!3.11e-17!39;UBERON:0003056!5.29e-17!49;UBERON:0004121!5.64e-17!102;UBERON:0000924!5.64e-17!102;UBERON:0006601!5.64e-17!102;UBERON:0002791!6.26e-15!29;UBERON:0003528!6.26e-15!29;UBERON:0001893!6.26e-15!29;UBERON:0002619!6.95e-11!17;UBERON:0000956!7.87e-11!21;UBERON:0001869!7.87e-11!21;UBERON:0000203!7.87e-11!21;UBERON:0000153!1.24e-10!94;UBERON:0007811!6.66e-10!86;UBERON:0000025!1.51e-09!114;UBERON:0002021!5.03e-08!10;UBERON:0000411!5.03e-08!10;UBERON:0001950!5.03e-08!10;UBERON:0004111!1.71e-07!122;UBERON:0003076!7.11e-07!12;UBERON:0003057!7.11e-07!12
|ontology_enrichment_uberon_v019_2=UBERON:0000073,5.95e-29,54;UBERON:0001017,3.43e-27,73;UBERON:0001049,4.28e-27,52;UBERON:0005068,4.28e-27,52;UBERON:0006241,4.28e-27,52;UBERON:0007135,4.28e-27,52;UBERON:0001016,1.28e-25,75;UBERON:0000955,1.08e-23,47;UBERON:0006238,1.08e-23,47;UBERON:0002346,1.97e-23,64;UBERON:0003075,1.97e-23,64;UBERON:0007284,1.97e-23,64;UBERON:0002616,5.50e-23,46;UBERON:0003080,6.23e-20,40;UBERON:0002020,1.17e-19,34;UBERON:0002780,2.71e-19,39;UBERON:0001890,2.71e-19,39;UBERON:0006240,2.71e-19,39;UBERON:0004121,3.04e-19,95;UBERON:0000924,3.04e-19,95;UBERON:0006601,3.04e-19,95;UBERON:0003056,7.81e-19,49;UBERON:0010371,9.85e-19,73;UBERON:0003528,2.73e-16,29;UBERON:0002791,2.73e-16,29;UBERON:0001893,2.73e-16,29;UBERON:0010314,1.63e-15,92;UBERON:0002619,3.12e-12,17;UBERON:0000956,1.29e-11,21;UBERON:0001869,1.29e-11,21;UBERON:0000203,1.29e-11,21;UBERON:0002021,5.82e-09,10;UBERON:0000411,5.82e-09,10;UBERON:0001950,5.82e-09,10;UBERON:0000025,9.63e-08,114;UBERON:0003076,1.20e-07,12;UBERON:0003057,1.20e-07,12
|phase1_expression=2.7225304007815,0,0,0,0,0,0,0,0,0,0,0,0,0,0.999329285446988,0,0,0,0.137114433605739,0,9.0145887560134,0,0,0,0,0,0,0,0,0,0,0.635030673459631,0,0,0,0,0,0,0,0,0,0,0,1.1330713617802,1.11514624341466,1.10128051297009,10.9534788208725,2.39827672018491,9.00713349211335,7.97162586204562,1.67983705950435,5.75010257459886,0,0,0,2.05807548828758,0.286533439938757,1.54701627683233,5.46254444320914,5.28990979272033,5.70448263155561,2.71075625655306,1.77858959222228,0,0,0,8.98800331555214,16.9056054341484,1.8664130215526,1.4850653216486,0.841299845405528,18.5673139862472,17.6694832761291,3.1847607795888,2.68367318851062,2.75765635983006,20.9220173898839,58.3531135049308,40.5521247796483,7.51751840062105,7.593474419,6.25096044668112,5.58365998002762,2.8138130501584,7.48711414106369,16.2045722010517,12.6710795911202,7.64237727883732,0.302904773332736,0.151143120213571,3.47837386442013,0,0,0,0,0,0.280888840263504,0,0,0,0.563373679106722,0,0,0,0,0,0,1.1418387971906,0.258937883647172,0.148442139064825,1.73485326766136,1.82679286987285,0.922461989024234,1.05505848386836,2.3517741427141,0.376999773989026,0.494389935468748,0.433798070759735,0,0.808834249737046,0.662524555381181,0.484875253135222,0,4.68449275218475,6.91174132484402,0.510914110417183,0.11981512450592,0.599902730993408,0,8.68785708547972,78.2326030819851,22.6177833803156,63.4458768701809,65.4631570765646,44.882217624865,56.6222008106474,2.54598409625791,0.373220911830279,0,0,1.30120442962704,1.83921683546778,0.900310649026746,2.10986744970001,2.17716797284249,1.92170580427275,3.37326208415024,1.29351685369508,0.862271971731369,1.70195472151037,2.46331573829528,2.84954452155847,2.22437799380478,2.089512999133,1.64625709126355,1.59227413454795,0,0,0,1.86413195281952,0.703578179943289,1.2604344302271,1.18372367792605,1.37734962223183,1.54267112887378,0.465067889500816,0.268273401399619,1.63471479314037,0.658239399653922,0.820837320395476,0.56748166682099,0.877199924551994,0.219550115291051,0.402619256281115,58.4606057008274,10.8049842998249,0,0,1.49301775374664,1.85789337488351,1.67527699718721,1.00841762311671,1.11189021922435,0.951128130562796,0.949058123089023,0.164698954724011,0.502670417600539,0.198956472041151,0.974820435595601,0,0.216138049874694,0.398282546508734,2.0863469104839,1.82797620175566,2.25415471346161,2.44381593414377,1.93952487167626,1.05203729835478,1.07502113111237,0.738050739898011,0,0.370191491765402,0.296452627087149,0.667380422864376,1.17935397067922,0.449724224769707,1.01430060694251,0.482354319504834,0.50925170356284,0.287696137450811,1.29708181420028,0.274561413188081,0,0.372140947668503,0.312037673114561,0.252578877947112,0,0,0.184753190166605,1.13694847062291,1.62964976442026,1.18821560042632,0.704070744865506,1.50755631697634,0.714130922658041,0.585400943573396,0.945810864637146,0.8858587585951,1.2756381492599,0.655453258862952,0.518054945597687,1.3018415272336,0,0,0,0.275936746304732,3.85321415970701,3.39913891117389,0,0.252470927204373,0.315508219416257,0,0.646270193198397,0,0,0,0,1.46127928955656,0.395287777946524,16.0660658210904,0.567760340833074,2.84904965867608,4.0721739838394,1.64970122972535,0,2.42780636154981,0.906970670894253,0.377210159511796,2.06711325016541,1.53717573971964,1.29214146584111,1.09060118843252,0,0.948110273807448,0,0,0,3.42116078659489,2.8458910432206,1.71469628025274,3.01478397191865,4.28085162244969,2.79733335023606,4.56697423671899,0.938686832254841,1.0591603543191,0,0.32977250588296,1.13025098687134,0.663442174209714,0.238744688006273,0.328281799490123,0,3.8939313422207,1.19609616558497,3.30218988741156,0.925972636848558,0.188368457004691,0.546776910884101,0.228778173206523,1.18984900995699,0.419854356970974,0.138199973804424,0,1.89801596148681,1.82987520414164,1.40406943068342,2.09088296014469,1.52853794622324,0.539457385539283,0.495920734352016,0.26175594198403,0.129614973291793,0,0,1.79419855252775,1.65458490457098,2.13896307178452,1.93739735216597,1.18269287843545,2.22978753426933,1.5624526181274,0.734015410979976,0,0,0.632022241256357,0.810900861160657,0.718976700153791,0.389762468933385,0.358053391334963,0.198681354781265,0.721172697119813,0.886137163047463,0.302899349844443,0.457240839929999,0.403304740547362,0.487289403698762,0.384847366561318,0.584384510907845,0,0.443971906748129,0.0897138566094757,0.335769232728157,0.19318959403219,0.563047426353546,0.183151624267265,0,0,65.5112137435797,67.667809766555,61.8727154514548,75.0998406841915,55.491684101422,62.6976934833451,48.60162001669,54.0385443869065,43.0485288534994,48.1517089929193,1.45302286617847,1.99512436700516,2.21953687480374,2.91728060481953,2.30574478890781,3.30918315210025,2.66696073361938,1.85431551515005,4.81378814387723,2.52697211763797,2.78827229879264,3.58390048633545,1.68554713445788,2.4969809437899,3.27382173046996,4.28664322154766,2.66533949673168,2.12200142510076,4.12085900803307,3.23837624295674,2.74295401908332,1.77475806159337,2.62279808942053,4.0696996657052,3.01150017329058,2.70766745253365,1.646351755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|phase1_expression=2.7225304007815,0,0,0,0,0,0,0,0,0,0,0,0,0,0.999329285446988,0,0,0,0.137114433605739,0,9.0145887560134,0,0,0,0,0,0,0,0,0,0,0.635030673459631,0,0,0,0,0,0,0,0,0,0,0,1.1330713617802,1.11514624341466,1.10128051297009,10.9534788208725,2.39827672018491,9.00713349211335,7.97162586204562,1.67983705950435,5.75010257459886,0,0,0,2.05807548828758,0.286533439938757,1.54701627683233,5.46254444320914,5.28990979272033,5.70448263155561,2.71075625655306,1.77858959222228,0,0,0,8.98800331555214,16.9056054341484,1.8664130215526,1.4850653216486,0.841299845405528,18.5673139862472,17.6694832761291,3.1847607795888,2.68367318851062,2.75765635983006,20.9220173898839,58.3531135049308,40.5521247796483,7.51751840062105,7.593474419,6.25096044668112,5.58365998002762,2.8138130501584,7.48711414106369,16.2045722010517,12.6710795911202,7.64237727883732,0.302904773332736,0.151143120213571,3.47837386442013,0,0,0,0,0,0.280888840263504,0,0,0,0.563373679106722,0,0,0,0,0,0,1.1418387971906,0.258937883647172,0.148442139064825,1.73485326766136,1.82679286987285,0.922461989024234,1.05505848386836,2.3517741427141,0.376999773989026,0.494389935468748,0.433798070759735,0,0.808834249737046,0.662524555381181,0.484875253135222,0,4.68449275218475,6.91174132484402,0.510914110417183,0.11981512450592,0.599902730993408,0,8.68785708547972,78.2326030819851,22.6177833803156,63.4458768701809,65.4631570765646,44.882217624865,56.6222008106474,2.54598409625791,0.373220911830279,0,0,1.30120442962704,1.83921683546778,0.900310649026746,2.10986744970001,2.17716797284249,1.92170580427275,3.37326208415024,1.29351685369508,0.862271971731369,1.70195472151037,2.46331573829528,2.84954452155847,2.22437799380478,2.089512999133,1.64625709126355,1.59227413454795,0,0,0,1.86413195281952,0.703578179943289,1.2604344302271,1.18372367792605,1.37734962223183,1.54267112887378,0.465067889500816,0.268273401399619,1.63471479314037,0.658239399653922,0.820837320395476,0.56748166682099,0.877199924551994,0.219550115291051,0.402619256281115,58.4606057008274,10.8049842998249,0,0,1.49301775374664,1.85789337488351,1.67527699718721,1.00841762311671,1.11189021922435,0.951128130562796,0.949058123089023,0.164698954724011,0.502670417600539,0.198956472041151,0.974820435595601,0,0.216138049874694,0.398282546508734,2.0863469104839,1.82797620175566,2.25415471346161,2.44381593414377,1.93952487167626,1.05203729835478,1.07502113111237,0.738050739898011,0,0.370191491765402,0.296452627087149,0.667380422864376,1.17935397067922,0.449724224769707,1.01430060694251,0.482354319504834,0.50925170356284,0.287696137450811,1.29708181420028,0.274561413188081,0,0.372140947668503,0.312037673114561,0.252578877947112,0,0,0.184753190166605,1.13694847062291,1.62964976442026,1.18821560042632,0.704070744865506,1.50755631697634,0.714130922658041,0.585400943573396,0.945810864637146,0.8858587585951,1.2756381492599,0.655453258862952,0.518054945597687,1.3018415272336,0,0,0,0.275936746304732,3.85321415970701,3.39913891117389,0,0.252470927204373,0.315508219416257,0,0.646270193198397,0,0,0,0,1.46127928955656,0.395287777946524,16.0660658210904,0.567760340833074,2.84904965867608,4.0721739838394,1.64970122972535,0,2.42780636154981,0.906970670894253,0.377210159511796,2.06711325016541,1.53717573971964,1.29214146584111,1.09060118843252,0,0.948110273807448,0,0,0,3.42116078659489,2.8458910432206,1.71469628025274,3.01478397191865,4.28085162244969,2.79733335023606,4.56697423671899,0.938686832254841,1.0591603543191,0,0.32977250588296,1.13025098687134,0.663442174209714,0.238744688006273,0.328281799490123,0,3.8939313422207,1.19609616558497,3.30218988741156,0.925972636848558,0.188368457004691,0.546776910884101,0.228778173206523,1.18984900995699,0.419854356970974,0.138199973804424,0,1.89801596148681,1.82987520414164,1.40406943068342,2.09088296014469,1.52853794622324,0.539457385539283,0.495920734352016,0.26175594198403,0.129614973291793,0,0,1.79419855252775,1.65458490457098,2.13896307178452,1.93739735216597,1.18269287843545,2.22978753426933,1.5624526181274,0.734015410979976,0,0,0.632022241256357,0.810900861160657,0.718976700153791,0.389762468933385,0.358053391334963,0.198681354781265,0.721172697119813,0.886137163047463,0.302899349844443,0.457240839929999,0.403304740547362,0.487289403698762,0.384847366561318,0.584384510907845,0,0.443971906748129,0.0897138566094757,0.335769232728157,0.19318959403219,0.563047426353546,0.183151624267265,0,0,65.5112137435797,67.667809766555,61.8727154514548,75.0998406841915,55.491684101422,62.6976934833451,48.60162001669,54.0385443869065,43.0485288534994,48.1517089929193,1.45302286617847,1.99512436700516,2.21953687480374,2.91728060481953,2.30574478890781,3.30918315210025,2.66696073361938,1.85431551515005,4.81378814387723,2.52697211763797,2.78827229879264,3.58390048633545,1.68554713445788,2.4969809437899,3.27382173046996,4.28664322154766,2.66533949673168,2.12200142510076,4.12085900803307,3.23837624295674,2.74295401908332,1.77475806159337,2.62279808942053,4.0696996657052,3.01150017329058,2.70766745253365,1.646351755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|short_description=p1@Shank3
|short_description=p1@Shank3
}}
}}

Latest revision as of 07:43, 27 September 2015

Short description:p1@Shank3
Species:Mouse (Mus musculus)
DPI dataset: NA
TSS-like-by-RIKEN-classifier(Yes/No): NA
DHS support(Yes/No): NA
Description: CAGE_peak_1_at_Shank3_5end
Coexpression cluster:MCL_coexpression_mm9:2
Association with transcript: 0bp_to_ENSMUST00000109309_5end
EntrezGene:Shank3
Link to Zenbu:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression

Sample

p1@Shank3

Atoh1+ Inner ear hair cells - organ of corti, pool1.CNhs12533.12158-128G72.72
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13242.11850-124I50.00
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13233.11851-124I60.00
CD326+ enterocyte, pool1.CNhs13542.11848-124I30.00
CD326+ enterocyte, pool2.CNhs13197.11849-124I40.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13236.11852-124I70.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13210.11853-124I80.00
CD4+CD25+ regulatory T cells, pool2 (Balb_cAJcl).CNhs13221.11818-124E90.00
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J).CNhs13219.11816-124E70.00
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl).CNhs13226.11820-124F20.00
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J).CNhs13218.11815-124E60.00
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl).CNhs13225.11819-124F10.00
CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J).CNhs13217.11813-124E40.00
CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl).CNhs13220.11817-124E80.00
CD41+ megakaryocyte cancer, donor1.CNhs13079.11774-124A11.00
CD41+ megakaryocyte cancer, donor2.CNhs13213.11776-124A30.00
CD41+ megakaryocyte cancer, donor3.CNhs13506.11778-124A50.00
CD41+ megakaryocyte control, donor1.CNhs13212.11775-124A20.00
CD41+ megakaryocyte control, donor2.CNhs13214.11777-124A40.14
CD41+ megakaryocyte control, donor3.CNhs13201.11779-124A60.00
Clontech Mouse Universal Reference Total RNA, pool1.CNhs10609.10001-101A39.01
EBF KO HPCs induced to T cell, 00hr00min, biol_rep1.CNhs11058.12972-138H20.00
EBF KO HPCs induced to T cell, 00hr00min, biol_rep2.CNhs12980.12988-138I90.00
Follicle Associated Epithelium, pool2.CNhs13211.10262-104D10.00
Follicle Associated Epithelium, pool3.CNhs13200.10263-104D20.00
GP2+ M cell, pool1.CNhs13228.11845-124H90.00
GP2+ M cell, pool2.CNhs13231.11846-124I10.00
GP2+ M cell, pool3.CNhs13240.11847-124I20.00
Ileum epithelium, pool1.CNhs13199.10252-104B90.00
Ileum epithelium, pool2.CNhs13232.10253-104C10.00
Ileum epithelium, treated with RANKL, day03, pool3.CNhs13234.10260-104C80.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep1.CNhs12449.13063-139I30.64
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep2.CNhs12668.13129-140G60.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep3.CNhs12770.13195-141E90.00
Lgr5 positive intestinal stem cells, pool1.CNhs12555.12228-129F50.00
Lgr5 positive intestinal stem cells, pool2.CNhs12556.12229-129F60.00
Lgr5 positive intestinal stem cells, pool3.CNhs12557.12230-129F70.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL).CNhs12539.12159-128G80.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL).CNhs12198.12161-128H10.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL).CNhs12542.12163-128H30.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor1 (4,5,6PBS).CNhs12540.12160-128G90.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor2 (0127 PBS).CNhs12541.12162-128H20.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor3 (0128 PBS).CNhs12543.12164-128H40.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep1.CNhs11055.11484-119D81.13
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep2.CNhs11056.11485-119D91.12
Mouse Aortic Smooth Muscle cells, donor1.CNhs11297.11299-117B31.10
Mouse Astrocytes - cerebellar, donor1.CNhs13077.11708-123B710.95
Mouse Astrocytes - cerebellar, donor2.CNhs12076.11550-120C22.40
Mouse Astrocytes - hippocampus, donor1.CNhs12129.11709-123B89.01
Mouse Astrocytes - hippocampus, donor2.CNhs12077.11551-120C37.97
Mouse Astrocytes, donor2.CNhs12078.11552-120C41.68
Mouse Astrocytes, donor3.CNhs12107.11633-122C45.75
Mouse CD19+ B Cells, donor1.CNhs13531.11856-125A20.00
Mouse CD4+ T Cells, donor1.CNhs13509.11854-124I90.00
Mouse CD8+ T Cells, donor1.CNhs13511.11855-125A10.00
Mouse Cardiac Myocytes, donor1.CNhs12355.11711-123C12.06
Mouse Cardiac Myocytes, donor2.CNhs12356.11729-123E10.29
Mouse Cardiac Myocytes, donor3.CNhs12353.11634-122C51.55
Mouse Granule cells, donor1.CNhs12131.11713-123C35.46
Mouse Granule cells, donor2.CNhs12357.11731-123E35.29
Mouse Granule cells, donor3.CNhs12108.11636-122C75.70
Mouse Meningeal cells, donor1.CNhs12132.11716-123C62.71
Mouse Meningeal cells, donor3.CNhs12109.11639-122D11.78
Mouse Mesenchymal stem cells - bone marrow derived, donor1.CNhs12628.11717-123C70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor2.CNhs12633.11735-123E70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor3.CNhs12616.11640-122D20.00
Mouse Microglia, donor1.CNhs12629.11718-123C88.99
Mouse Microglia, donor2.CNhs12634.11736-123E816.91
Mouse Neurons - cortical, donor1.CNhs12025.11724-123D51.87
Mouse Neurons - cortical, donor2.CNhs11947.11742-123F51.49
Mouse Neurons - cortical, donor3.CNhs12112.11647-122D90.84
Mouse Neurons - dorsal spinal cord, donor2.CNhs12635.11738-123F118.57
Mouse Neurons - dorsal spinal cord, donor3.CNhs12618.11643-122D517.67
Mouse Neurons - hippocampal, donor1.CNhs12133.11721-123D23.18
Mouse Neurons - hippocampal, donor2.CNhs12359.11739-123F22.68
Mouse Neurons - hippocampal, donor3.CNhs12110.11644-122D62.76
Mouse Neurons - raphe, donor1.CNhs12631.11722-123D320.92
Mouse Neurons - raphe, donor2.CNhs12636.11740-123F358.35
Mouse Neurons - raphe, donor3.CNhs12619.11645-122D740.55
Mouse Neurons - striatal, donor1.CNhs12134.11723-123D47.52
Mouse Neurons - striatal, donor2.CNhs12360.11741-123F47.59
Mouse Neurons - striatal, donor3.CNhs12111.11646-122D86.25
Mouse Neurons - substantia nigra, donor4, tech_rep1.CNhs12612.11489-119E45.58
Mouse Neurons - substantia nigra, donor5.CNhs12614.11490-119E52.81
Mouse Neurons - substantia nigra, donor6.CNhs12643.11770-123I67.49
Mouse Neurons - ventral spinal cord, donor1.CNhs12632.11725-123D616.20
Mouse Neurons - ventral spinal cord, donor2.CNhs12638.11743-123F612.67
Mouse Neurons - ventral spinal cord, donor3.CNhs12113.11648-122E17.64
Mouse Schwann, donor1.CNhs12507.11728-123D90.30
Mouse Schwann, donor2.CNhs12573.11746-123F90.15
Mouse hepatic Sinusoidal Endothelial Cells, donor1.CNhs13209.11830-124G33.48
Mouse hepatic Stellate Cells (lipocyte), donor1.CNhs13196.11825-124F70.00
Mouse hepatocyte, donor1.CNhs13078.11714-123C40.00
Mouse hepatocyte, donor3.CNhs12615.11637-122C80.00
Mouse hepatocyte, donor6.CNhs13090.11822-124F40.00
Mouse hepatocyte, donor8.CNhs13091.11824-124F60.00
SABiosciences XpressRef Mouse Universal Total RNA, pool1.CNhs10611.10003-101A70.28
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep1 (000hC4).CNhs11939.12338-130I70.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep2 (000hC5).CNhs13275.12460-132E30.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep3 (000hC6).CNhs13324.12582-133I80.00
Sox2+ Supporting cells - organ of corti, pool1.CNhs12532.12157-128G60.56
TSt-4/DLL1 feeder cells, biol_rep1.CNhs13407.12971-138H10.00
TSt-4/DLL1 feeder cells, biol_rep2.CNhs13408.12987-138I80.00
TSt-4/DLL1 feeder cells, biol_rep3.CNhs13409.13003-139B60.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep1.CNhs13739.13367-143G10.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep2.CNhs13740.13368-143G20.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep3.CNhs13741.13369-143G30.00
Universal RNA - Mouse Normal Tissues Biochain, pool1.CNhs10613.10008-101B61.14
accessory axillary lymph node, adult.CNhs10475.1063-29H90.26
adrenal gland, adult.CNhs10508.49-24D70.15
adrenal gland, embryo E14.CNhs11038.406-44C51.73
adrenal gland, embryo E16.CNhs11004.1254-43D61.83
adrenal gland, embryo E17.CNhs11043.1263-45I10.92
adrenal gland, embryo E18.CNhs11026.1262-18F51.06
adrenal gland, neonate N00.CNhs11191.1311-23C12.35
adrenal gland, neonate N25.CNhs11223.1377-27I30.38
amnion, adult pregnant day17.5.CNhs10488.583-22A80.49
aorta, adult.CNhs10498.46-23H10.43
bone (os femoris), adult.CNhs10483.56-12G20.00
bone (os femoris), neonate N02.CNhs11227.1985-43F50.81
bone (os femoris), neonate N16.CNhs11225.1525-43A60.66
bone (os femoris), neonate N20.CNhs11195.1350-25C30.48
cecum, adult.CNhs10467.37-13H40.00
cerebellum, adult.CNhs10494.15-8B24.68
cerebellum, neonate N30.CNhs11135.1395-42I26.91
colon, adult.CNhs10468.36-18H70.51
common myeloid progenitor CMP, biol_rep1.CNhs12550.12122-128C70.12
common myeloid progenitor CMP, biol_rep2.CNhs12203.12125-128D10.60
common myeloid progenitor CMP, biol_rep3.CNhs12551.12128-128D40.00
corpora quadrigemina, adult.CNhs10501.16-22A48.69
corpus striatum, adult.CNhs10487.19-21D878.23
corpus striatum, neonate N00.CNhs11226.630-43F122.62
cortex, adult.CNhs10473.12-14D563.45
cortex, neonate N30.CNhs11107.1392-42F265.46
diencephalon, adult.CNhs10482.20-12F244.88
diencephalon, neonate N30.CNhs11201.1388-42B256.62
epididymis and seminiferous tubule, neonate N00.CNhs11218.1310-23B12.55
epididymis and seminiferous tubule, neonate N30.CNhs11199.1387-42A20.37
epididymis, adult.CNhs10490.58-23B20.00
eyeball, adult.CNhs10484.31-12G40.00
eyeball, embryo E12.CNhs11016.345-16C61.30
eyeball, embryo E14.CNhs10521.399-16E21.84
eyeball, embryo E15.CNhs10593.426-16C90.90
eyeball, embryo E17.CNhs11023.1261-18D42.11
eyeball, neonate N00.CNhs11207.633-15C62.18
eyeball, neonate N01.CNhs11140.1532-43E71.92
eyeball, neonate N02.CNhs11205.1551-44G83.37
eyeball, neonate N16.CNhs11188.777-19A21.29
forelimb, embryo E11.CNhs10596.335-25E20.86
forelimb, embryo E12.CNhs10600.359-14H21.70
forelimb, embryo E13.CNhs10589.384-1E22.46
forelimb, embryo E14.CNhs10577.413-26A82.85
forelimb, embryo E15.CNhs11007.437-20E72.22
forelimb, embryo E17.CNhs10598.1517-43C42.09
forelimb, embryo E18.CNhs11008.1520-43B51.65
gonad, embryo E13.CNhs11044.1564-45I61.59
granulocyte macrophage progenitor GMP, biol_rep1.CNhs12206.12123-128C80.00
granulocyte macrophage progenitor GMP, biol_rep2.CNhs12202.12126-128D20.00
granulocyte macrophage progenitor GMP, biol_rep3.CNhs11928.12129-128D50.00
heart, embryo E11.CNhs10586.331-24E91.86
heart, embryo E12.CNhs11015.353-12F50.70
heart, embryo E13.CNhs11013.376-3I91.26
heart, embryo E14.CNhs10597.403-26D41.18
heart, embryo E15.CNhs11017.431-16C81.38
heart, embryo E16.CNhs11021.457-17C61.54
heart, embryo E17.CNhs11025.479-18E50.47
heart, embryo E18.CNhs11030.1283-20G30.27
heart, neonate N00.CNhs11213.639-21E31.63
heart, neonate N03.CNhs11221.1349-25I20.66
heart, neonate N10.CNhs11118.749-24G10.82
heart, neonate N16.CNhs11209.782-15G10.57
heart, neonate N20.CNhs11127.821-26I60.88
heart, neonate N25.CNhs11196.1351-25D30.22
heart, neonate N30.CNhs11202.1390-42D20.40
hippocampus, adult.CNhs10478.13-16E858.46
hippocampus, neonate N00.CNhs11228.627-43G110.80
intestinal mucosa, adult.CNhs10506.860-29I30.00
intestine, adult.CNhs10496.178-9A30.00
intestine, embryo E12.CNhs11019.1251-16I51.49
intestine, embryo E13.CNhs11010.381-16D51.86
intestine, embryo E15.CNhs10602.976-16D81.68
intestine, embryo E16.CNhs10585.463-22H41.01
intestine, embryo E17.CNhs10582.482-18D31.11
intestine, embryo E18.CNhs10526.1289-20F70.95
intestine, neonate N00.CNhs11126.644-26D10.95
intestine, neonate N01.CNhs11192.1322-23E90.16
intestine, neonate N06.CNhs11102.688-20B80.50
intestine, neonate N07.CNhs11095.720-20F20.20
intestine, neonate N10.CNhs11098.755-23A50.97
intestine, neonate N20.CNhs11187.827-18D10.00
intestine, neonate N25.CNhs11121.1352-25E30.22
intestine, neonate N30.CNhs11131.1384-42G10.40
kidney, embryo E14.CNhs10606.411-4I92.09
kidney, embryo E15.CNhs10997.434-16F81.83
kidney, embryo E16.CNhs10584.464-22A52.25
kidney, embryo E17.CNhs11028.483-18I22.44
kidney, embryo E18.CNhs11001.1288-20C71.94
kidney, neonate N00.CNhs11214.646-21G71.05
kidney, neonate N10.CNhs11206.758-6D51.08
kidney, neonate N20.CNhs11113.832-19I10.74
kidney, neonate N25.CNhs11122.1353-25F30.00
kidney, neonate N30.CNhs11203.1385-42H10.37
liver, adult pregnant day01.CNhs10466.508-5B20.30
liver, embryo E12.CNhs10601.355-15F80.67
liver, embryo E13.CNhs10524.378-3H61.18
liver, embryo E14.CNhs10594.409-16E10.45
liver, embryo E15.CNhs10520.433-16D71.01
liver, embryo E16.CNhs10523.462-17F50.48
liver, embryo E17.CNhs10510.481-18A30.51
liver, embryo E18.CNhs10579.499-43G40.29
liver, neonate N00.CNhs11117.641-24F41.30
liver, neonate N03.CNhs11123.1345-25G20.27
liver, neonate N06.CNhs11101.684-20A80.00
liver, neonate N07.CNhs11103.716-20H20.37
liver, neonate N10.CNhs11115.751-24B90.31
liver, neonate N20.CNhs11220.823-25A30.25
liver, neonate N25.CNhs11198.1368-26H10.00
liver, neonate N30.CNhs11106.1382-42D10.00
lung, adult.CNhs10474.28-22B10.18
lung, embryo E12.CNhs10522.354-16G21.14
lung, embryo E14.CNhs10604.404-26F81.63
lung, embryo E15.CNhs11020.432-17C51.19
lung, embryo E16.CNhs10998.458-17B60.70
lung, embryo E17.CNhs10605.480-44A61.51
lung, embryo E18.CNhs10583.1287-20I60.71
lung, neonate N00.CNhs11224.640-42C60.59
lung, neonate N06.CNhs11212.683-20E50.95
lung, neonate N07.CNhs11111.715-19A30.89
lung, neonate N10.CNhs11219.750-23E61.28
lung, neonate N20.CNhs11109.822-18A40.66
lung, neonate N25.CNhs11119.1359-25C70.52
lung, neonate N30.CNhs11133.1394-42H21.30
macrophage, bone marrow derived, pool1.CNhs11457.3560-170A10.00
macrophage, bone marrow derived, pool2.CNhs11532.3632-171A10.00
mammary gland, adult lactating day02.CNhs10480.595-22B60.00
mammary gland, adult pregnant day19.CNhs10476.588-5H20.28
medulla oblongata, adult.CNhs10477.17-12C23.85
medulla oblongata, neonate N30.CNhs11200.1396-42A33.40
mouse fibroblast cell line: CRL-1658 NIH/3T3.CNhs11093.1830-49C70.00
muscle (biceps femoris), neonate N30.CNhs11129.1389-42C20.25
neurospheres - enteric neuron derived, biol_rep1.CNhs13087.11810-124E10.32
neurospheres - enteric neuron derived, biol_rep2.CNhs13088.11811-124E20.00
neurospheres - enteric neuron derived, biol_rep3.CNhs13089.11812-124E30.65
neurospheres - parasympathetic neuron derived, biol_rep1.CNhs13084.11807-124D70.00
neurospheres - parasympathetic neuron derived, biol_rep2.CNhs13085.11808-124D80.00
neurospheres - parasympathetic neuron derived, biol_rep3.CNhs13086.11809-124D90.00
neurospheres - sympathetic neuron derived, biol_rep1.CNhs13081.11804-124D40.00
neurospheres - sympathetic neuron derived, biol_rep2.CNhs13082.11805-124D51.46
neurospheres - sympathetic neuron derived, biol_rep3.CNhs13083.11806-124D60.40
olfactory brain, adult.CNhs10489.18-22I916.07
ovary, adult.CNhs10507.91-2I70.57
ovary, embryo E18.CNhs11040.505-44H72.85
ovary, neonate N00.CNhs11217.1299-22I44.07
oviduct, adult pregnant day01.CNhs10500.988-6G61.65
pancreas, adult.CNhs10486.34-16E40.00
pancreas, embryo E14.CNhs11012.405-44F42.43
pancreas, embryo E15.CNhs11042.1556-45F20.91
pancreas, embryo E16.CNhs11003.460-26E50.38
pancreas, embryo E17.CNhs10599.1558-45G32.07
pancreas, embryo E18.CNhs10580.1535-43I71.54
pancreas, neonate N00.CNhs11105.645-26G91.29
pancreas, neonate N01.CNhs11138.1531-43D71.09
pancreas, neonate N02.CNhs11139.1539-43D80.00
pancreas, neonate N16.CNhs11136.787-43B60.95
pancreas, neonate N25.CNhs11094.1555-45E20.00
pancreas, neonate N30.CNhs11182.1548-44H50.00
pituitary gland, adult.CNhs10493.21-1G80.00
pituitary gland, embryo E12.CNhs11018.346-16E63.42
pituitary gland, embryo E13.CNhs11009.370-44C72.85
pituitary gland, embryo E14.CNhs11037.398-44A51.71
pituitary gland, embryo E15.CNhs10592.427-16B93.01
pituitary gland, embryo E16.CNhs11036.449-43F64.28
pituitary gland, embryo E17.CNhs11039.1265-44F52.80
pituitary gland, neonate N00.CNhs11190.1308-22E94.57
placenta, adult pregnant day10.CNhs10472.539-13I70.94
placenta, adult pregnant day17.CNhs10464.577-18G31.06
prostate, adult.CNhs10470.859-1F80.00
skin, adult.CNhs10492.30-1C30.33
skin, neonate N00.CNhs11124.650-25G41.13
skin, neonate N03.CNhs11215.662-22H30.66
skin, neonate N06.CNhs11097.693-20I50.24
skin, neonate N10.CNhs11108.762-6C40.33
small intestine, neonate N16.CNhs11114.790-21I10.00
spinal cord, adult.CNhs10505.24-13C93.89
spleen, adult.CNhs10465.25-2G21.20
spleen, embryo E16.CNhs11035.461-43C13.30
spleen, embryo E18.CNhs11011.1271-21F20.93
spleen, neonate N10.CNhs11116.752-24D10.19
spleen, neonate N20.CNhs11112.824-19H10.55
spleen, neonate N25.CNhs11099.1354-25G30.23
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep1.CNhs12534.12121-128C61.19
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep2.CNhs12535.12124-128C90.42
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep3.CNhs12536.12127-128D30.14
stomach, adult.CNhs10503.33-1H60.00
stomach, embryo E12.CNhs10588.356-43E31.90
stomach, embryo E15.CNhs10603.1252-16G81.83
stomach, embryo E16.CNhs11022.459-17D41.40
stomach, embryo E17.CNhs11006.1035-18D52.09
stomach, embryo E18.CNhs10999.1286-20C61.53
stomach, neonate N03.CNhs11193.1340-24B80.54
stomach, neonate N07.CNhs11210.718-18A90.50
stomach, neonate N25.CNhs11104.1355-25E40.26
stomach, neonate N30.CNhs11134.1386-42I10.13
submandibular gland, adult.CNhs10469.59-29C10.00
testis, adult.CNhs10504.57-7G50.00
testis, embryo E13.CNhs11031.389-23F51.79
testis, embryo E15.CNhs11034.443-27C51.65
testis, embryo E16.CNhs11033.470-26G52.14
testis, embryo E17.CNhs11029.486-18I51.94
testis, embryo E18.CNhs11027.503-18G51.18
testis, neonate N00.CNhs11189.1300-22B72.23
testis, neonate N07.CNhs11222.726-26I41.56
testis, neonate N10.CNhs11204.763-44D90.73
testis, neonate N20.CNhs11110.839-18H30.00
testis, neonate N30.CNhs11130.1391-42E20.00
thymus, adult.CNhs10471.38-12B50.63
thymus, embryo E14.CNhs11041.402-44I40.81
thymus, embryo E15.CNhs11005.430-45I20.72
thymus, embryo E16.CNhs11002.456-26C50.39
thymus, embryo E17.CNhs10581.478-18C10.36
thymus, embryo E18.CNhs10595.1273-19G40.20
thymus, neonate N02.CNhs11181.1541-43F80.72
thymus, neonate N03.CNhs11137.2104-43C70.89
thymus, neonate N06.CNhs11197.681-26C40.30
thymus, neonate N07.CNhs11211.713-19D30.46
thymus, neonate N10.CNhs11194.748-24E40.40
thymus, neonate N20.CNhs11186.820-7A20.49
thymus, neonate N25.CNhs11125.1362-25G70.38
thymus, neonate N30.CNhs11132.1393-42G20.58
tongue, adult.CNhs10499.32-1B40.00
trophoblast stem cell line B1 differentiation, day00, biol_rep1.CNhs13526.13297-142H30.44
trophoblast stem cell line R1AB differentiation, day00, biol_rep1.CNhs13481.13283-142F70.09
trophoblast stem cell line Rybp differentiation, day00, biol_rep1.CNhs13519.13290-142G50.34
urinary bladder, adult.CNhs10481.879-12E40.19
uterus, adult pregnant day19.CNhs10497.590-15F50.56
uterus, adult.CNhs10509.92-27E50.18
vagina, adult.CNhs10502.89-27D50.00
vesicular gland, adult.CNhs10491.51-27F80.00
visual cortex - wildtype, neonate N15, donor1.CNhs13031.10235-104A165.51
visual cortex - wildtype, neonate N15, donor2.CNhs13032.10236-104A267.67
visual cortex - wildtype, neonate N15, donor3.CNhs13033.10237-104A361.87
visual cortex - wildtype, neonate N15, donor5.CNhs13820.10349-105D775.10
visual cortex - wildtype, neonate N30, donor1.CNhs13034.10238-104A455.49
visual cortex - wildtype, neonate N30, donor2.CNhs13035.10239-104A562.70
visual cortex - wildtype, neonate N30, donor3.CNhs13036.10240-104A648.60
visual cortex - wildtype, neonate N60-70, donor1.CNhs13037.10241-104A754.04
visual cortex - wildtype, neonate N60-70, donor2.CNhs13038.10242-104A843.05
visual cortex - wildtype, neonate N60-70, donor3.CNhs13039.10243-104A948.15
whole body, embryo E11.CNhs11014.324-5I81.45
whole body, embryo E12.CNhs10587.857-27C92.00
whole body, embryo E13.CNhs10512.372-23H22.22
whole body, embryo E14.5.CNhs10578.420-27D22.92
whole body, embryo E14.CNhs10519.395-14B12.31
whole body, embryo E16.CNhs10514.453-14F23.31
whole body, embryo E17.5, pool1 (internal control).CNhs10479.3139-67G52.67
whole body, embryo E17.5, pool1 (internal control).CNhs10495.3139-67G51.85
whole body, embryo E17.5, pool1 (internal control).CNhs10511.3139-67G54.81
whole body, embryo E17.5, pool1 (internal control).CNhs10527.3139-67G52.53
whole body, embryo E17.5, pool1 (internal control).CNhs10591.3139-67G52.79
whole body, embryo E17.5, pool1 (internal control).CNhs10607.3139-67G53.58
whole body, embryo E17.5, pool1 (internal control).CNhs10623.3139-67G51.69
whole body, embryo E17.5, pool1 (internal control).CNhs10639.3139-67G52.50
whole body, embryo E17.5, pool1 (internal control).CNhs10655.3139-67G53.27
whole body, embryo E17.5, pool1 (internal control).CNhs10725.3139-67G54.29
whole body, embryo E17.5, pool1 (internal control).CNhs10749.3139-67G52.67
whole body, embryo E17.5, pool1 (internal control).CNhs10840.3139-67G52.12
whole body, embryo E17.5, pool1 (internal control).CNhs10856.3139-67G54.12
whole body, embryo E17.5, pool1 (internal control).CNhs10880.3139-67G53.24
whole body, embryo E17.5, pool1 (internal control).CNhs11000.3139-67G52.74
whole body, embryo E17.5, pool1 (internal control).CNhs11024.3139-67G51.77
whole body, embryo E17.5, pool1 (internal control).CNhs11032.3139-67G52.62
whole body, embryo E17.5, pool1 (internal control).CNhs11048.3139-67G54.07
whole body, embryo E17.5, pool1 (internal control).CNhs11072.3139-67G53.01
whole body, embryo E17.5, pool1 (internal control).CNhs11080.3139-67G52.71
whole body, embryo E17.5, pool1 (internal control).CNhs11096.3139-67G51.65
whole body, embryo E17.5, pool1 (internal control).CNhs11120.3139-67G52.37
whole body, embryo E17.5, pool1 (internal control).CNhs11128.3139-67G52.72
whole body, embryo E17.5, pool1 (internal control).CNhs11184.3139-67G52.81
whole body, embryo E17.5, pool1 (internal control).CNhs11208.3139-67G52.49
whole body, embryo E17.5, pool1 (internal control).CNhs11216.3139-67G52.17
whole body, embryo E17.5, pool1 (internal control).CNhs11246.3139-67G53.27
whole body, embryo E17.5, pool1 (internal control).CNhs11278.3139-67G51.86
whole body, embryo E17.5.CNhs10513.490-9F92.89
whole body, embryo E17.CNhs10517.475-3I55.00
whole body, embryo E18.CNhs10516.493-3B32.57
whole body, neonate N00.CNhs10525.657-19C23.22
whole body, neonate N01.CNhs10576.659-23C63.06
whole body, neonate N06.CNhs10515.692-21D11.54
whole body, neonate N10.CNhs10518.761-6B42.09





  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Cell type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)6.09e-1123
neuroblast (sensu Vertebrata)6.09e-1123
neural cell3.26e-0843
ectodermal cell9.60e-0844
neurectodermal cell9.60e-0844

Uber anatomy
Ontology termp-valuen
regional part of nervous system5.95e-2954
central nervous system3.43e-2773
neural tube4.28e-2752
neural rod4.28e-2752
future spinal cord4.28e-2752
neural keel4.28e-2752
nervous system1.28e-2575
brain1.08e-2347
future brain1.08e-2347
neurectoderm1.97e-2364
neural plate1.97e-2364
presumptive neural plate1.97e-2364
regional part of brain5.50e-2346
anterior neural tube6.23e-2040
gray matter1.17e-1934
regional part of forebrain2.71e-1939
forebrain2.71e-1939
future forebrain2.71e-1939
ectoderm-derived structure3.04e-1995
ectoderm3.04e-1995
presumptive ectoderm3.04e-1995
pre-chordal neural plate7.81e-1949
ecto-epithelium9.85e-1973
brain grey matter2.73e-1629
regional part of telencephalon2.73e-1629
telencephalon2.73e-1629
structure with developmental contribution from neural crest1.63e-1592
regional part of cerebral cortex3.12e-1217
cerebral cortex1.29e-1121
cerebral hemisphere1.29e-1121
pallium1.29e-1121
occipital lobe5.82e-0910
visual cortex5.82e-0910
neocortex5.82e-0910
tube9.63e-08114
posterior neural tube1.20e-0712
chordal neural plate1.20e-0712
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