FFCP PHASE1:Mm9::chr10:86241764..86241789,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=103466 | |EntrezGene=103466 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=2598 | |||
|TSSclassifier=NA | |||
|UniProt=Q3UHB1 | |UniProt=Q3UHB1 | ||
|association_with_transcript=14bp_to_ENSMUST00000099396,NM_175331,uc007gqn.1_5end | |association_with_transcript=14bp_to_ENSMUST00000099396,NM_175331,uc007gqn.1_5end | ||
|cluster_id=chr10:86241764..86241789,+ | |||
|description=CAGE_peak_1_at_Nt5dc3_5end | |description=CAGE_peak_1_at_Nt5dc3_5end | ||
|id=chr10:86241764..86241789,+ | |id=chr10:86241764..86241789,+ | ||
|ontology_enrichment_celltype=CL:0000117!1.31e-10!23;CL:0000337!1.31e-10!23;CL:0000540!2.90e-10!33;CL:0000047!2.90e-10!33;CL:0000031!2.90e-10!33;CL:0000404!2.90e-10!33;CL:0000221!1.15e-09!44;CL:0000133!1.15e-09!44;CL:0000393!1.20e-09!39;CL:0000211!1.20e-09!39;CL:0002319!1.99e-09!43;CL:0000055!3.04e-09!50;CL:0002321!9.08e-08!70;CL:0000220!9.08e-08!70;CL:0000034!1.72e-07!97;CL:0000548!2.58e-07!115;CL:0000004!2.58e-07!115;CL:0000255!2.58e-07!115;CL:0000144!5.69e-07!121;CL:0000012!5.69e-07!121 | |ontology_enrichment_celltype=CL:0000117!1.31e-10!23;CL:0000337!1.31e-10!23;CL:0000540!2.90e-10!33;CL:0000047!2.90e-10!33;CL:0000031!2.90e-10!33;CL:0000404!2.90e-10!33;CL:0000221!1.15e-09!44;CL:0000133!1.15e-09!44;CL:0000393!1.20e-09!39;CL:0000211!1.20e-09!39;CL:0002319!1.99e-09!43;CL:0000055!3.04e-09!50;CL:0002321!9.08e-08!70;CL:0000220!9.08e-08!70;CL:0000034!1.72e-07!97;CL:0000548!2.58e-07!115;CL:0000004!2.58e-07!115;CL:0000255!2.58e-07!115;CL:0000144!5.69e-07!121;CL:0000012!5.69e-07!121 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.31e-10,23;CL:0000337,1.31e-10,23;CL:0000540,2.90e-10,33;CL:0000047,2.90e-10,33;CL:0000031,2.90e-10,33;CL:0000404,2.90e-10,33;CL:0000221,1.15e-09,44;CL:0000133,1.15e-09,44;CL:0000393,1.20e-09,39;CL:0000211,1.20e-09,39;CL:0002319,1.99e-09,43;CL:0002321,9.08e-08,70;CL:0000034,1.72e-07,97 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!8.57e-18!75;UBERON:0001016!8.57e-18!75;UBERON:0001017!4.96e-17!73;UBERON:0005743!4.96e-17!73;UBERON:0004121!8.25e-15!102;UBERON:0000924!8.25e-15!102;UBERON:0006601!8.25e-15!102;UBERON:0001049!1.71e-13!52;UBERON:0005068!1.71e-13!52;UBERON:0006241!1.71e-13!52;UBERON:0007135!1.71e-13!52;UBERON:0000955!2.91e-13!50;UBERON:0006238!2.91e-13!50;UBERON:0002020!3.94e-13!34;UBERON:0002616!4.64e-13!49;UBERON:0002346!1.03e-11!71;UBERON:0003075!1.03e-11!71;UBERON:0007284!1.03e-11!71;UBERON:0002791!2.03e-11!29;UBERON:0003528!2.03e-11!29;UBERON:0001893!2.03e-11!29;UBERON:0004111!1.20e-10!122;UBERON:0003080!5.57e-10!40;UBERON:0000033!9.18e-10!63;UBERON:0002780!1.52e-09!39;UBERON:0001890!1.52e-09!39;UBERON:0006240!1.52e-09!39;UBERON:0000025!3.28e-09!114;UBERON:0000956!3.11e-08!21;UBERON:0001869!3.11e-08!21;UBERON:0000203!3.11e-08!21;UBERON:0002619!3.91e-07!17 | |ontology_enrichment_uberon=UBERON:0000073!8.57e-18!75;UBERON:0001016!8.57e-18!75;UBERON:0001017!4.96e-17!73;UBERON:0005743!4.96e-17!73;UBERON:0004121!8.25e-15!102;UBERON:0000924!8.25e-15!102;UBERON:0006601!8.25e-15!102;UBERON:0001049!1.71e-13!52;UBERON:0005068!1.71e-13!52;UBERON:0006241!1.71e-13!52;UBERON:0007135!1.71e-13!52;UBERON:0000955!2.91e-13!50;UBERON:0006238!2.91e-13!50;UBERON:0002020!3.94e-13!34;UBERON:0002616!4.64e-13!49;UBERON:0002346!1.03e-11!71;UBERON:0003075!1.03e-11!71;UBERON:0007284!1.03e-11!71;UBERON:0002791!2.03e-11!29;UBERON:0003528!2.03e-11!29;UBERON:0001893!2.03e-11!29;UBERON:0004111!1.20e-10!122;UBERON:0003080!5.57e-10!40;UBERON:0000033!9.18e-10!63;UBERON:0002780!1.52e-09!39;UBERON:0001890!1.52e-09!39;UBERON:0006240!1.52e-09!39;UBERON:0000025!3.28e-09!114;UBERON:0000956!3.11e-08!21;UBERON:0001869!3.11e-08!21;UBERON:0000203!3.11e-08!21;UBERON:0002619!3.91e-07!17 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,8.57e-18,75;UBERON:0001017,4.96e-17,73;UBERON:0000073,7.42e-15,54;UBERON:0010314,1.25e-13,92;UBERON:0001049,1.71e-13,52;UBERON:0005068,1.71e-13,52;UBERON:0006241,1.71e-13,52;UBERON:0007135,1.71e-13,52;UBERON:0002020,3.94e-13,34;UBERON:0004121,2.14e-12,95;UBERON:0000924,2.14e-12,95;UBERON:0006601,2.14e-12,95;UBERON:0000955,1.55e-11,47;UBERON:0006238,1.55e-11,47;UBERON:0003528,2.03e-11,29;UBERON:0002791,2.03e-11,29;UBERON:0001893,2.03e-11,29;UBERON:0002616,2.45e-11,46;UBERON:0004111,1.20e-10,122;UBERON:0003080,5.57e-10,40;UBERON:0002780,1.52e-09,39;UBERON:0001890,1.52e-09,39;UBERON:0006240,1.52e-09,39;UBERON:0002346,1.77e-09,64;UBERON:0003075,1.77e-09,64;UBERON:0007284,1.77e-09,64;UBERON:0000025,3.28e-09,114;UBERON:0000956,3.11e-08,21;UBERON:0001869,3.11e-08,21;UBERON:0000203,3.11e-08,21;UBERON:0010371,4.77e-08,73;UBERON:0002619,3.91e-07,17 | |||
|phase1_expression=15.0539916278506,5.58360652222978,5.0049916332849,2.41971369045464,6.01074875935617,15.7806515597176,12.3814699515629,19.8849918100027,102.353401004262,104.860907792253,29.2782725665614,29.8347874642558,14.7232627740837,10.0533462781847,7.66152452176024,5.26435695213547,5.59649502502517,10.2525203741427,15.0825876966313,15.2780274647291,17.3488311908182,5.16312946244604,7.05239430675126,1.91990907352088,3.21172993494038,6.31655160526522,5.59990595006797,6.67960821326256,1.14014051673824,2.77233142735924,2.66076612786366,41.9120244483357,48.590118219181,31.6963362030877,4.33277429626912,1.99481574430191,6.73758875665818,8.37063261473815,4.6880120671428,5.23523743973798,13.5293242247133,7.5135003345429,7.76816564849846,32.4813790376989,32.9475026463422,37.8106309453064,39.119567217402,9.81113203712009,7.90870257844099,16.7209713203884,18.4782076545479,21.5628846547457,29.5297386661616,37.7188313845899,29.2401605253944,7.46052364504246,7.44986943840768,10.8291139378263,64.3366345533521,80.935619828621,78.5950940347662,12.5372476865579,30.2360230677787,15.2982951937838,13.8441290759376,19.1829631035447,13.4820049733282,7.30014780110954,25.611334240194,27.5412114196649,24.3976955167603,20.5668708770739,31.5842013560807,28.0503930202245,21.4693855080849,38.6071890376209,57.2602581196821,94.1055681687833,78.4929384939404,72.801230827067,66.785979829759,69.2814782840491,24.2889209131201,38.2678574821542,46.2978690763735,37.7124589406295,34.7386901149811,53.6830403976866,36.9543823465938,29.3973368815396,30.1459068249745,21.5105969245347,60.5174486999898,24.8263468153396,25.9910566979068,25.9855594516455,19.3813299781818,22.1559419351475,17.9252343175979,18.3736578745377,26.0560326586859,71.862827352018,140.142881838655,170.656008756799,15.5873549528074,16.4683912558814,17.1878311305026,17.2417658375781,15.5362730188303,90.8465891076728,14.7462527751215,30.142082352902,32.2861696158482,41.147280870866,41.2736362046324,44.6116399220348,8.89901883843746,7.37456720291549,22.1152637987469,12.2942805960031,25.1759331044849,13.5765070877862,27.9587641827183,31.9131068742586,32.8831329697124,7.15279754584056,23.4837644031604,10.1983464268879,14.6130761134024,43.2894947879938,37.5150494311274,19.7277332817197,54.5808365403748,45.2616359474685,69.1934188383335,65.8699528055096,9.16554274652847,17.6657898266332,21.4814344668623,19.991976309215,3.3831315170303,4.82794419310293,6.84236093260327,8.13806016312861,6.46346741937615,6.27757229395764,7.12133106653939,18.3679393224701,1.72454394346274,3.59301552318857,5.98233822157426,4.82230611340665,5.28289773528636,6.96504333044333,7.40815691068596,9.75267907410617,7.72434506044558,12.610047448621,9.66155897945015,6.21377317606506,8.91199027928165,12.244220179349,13.494449928357,21.0537727969722,29.773552787264,50.2273320660881,48.8257590547307,47.7570250281723,32.4182904329557,36.9376794177964,38.1023404865522,40.7897964916677,43.470922827628,28.8543800334799,99.8877255679604,31.488811388061,2.31293148088659,2.90895623329899,7.89166526980366,9.52170354627798,9.665059599157,6.6555563125703,7.78323153457046,4.56541502670142,4.2707615539006,5.10566759644434,7.79139147280835,5.57078121715222,7.60359939764569,5.39291645192533,5.40345124686736,9.35963984295526,7.2073802362171,7.65465034485183,10.1436962105772,7.53509913027663,4.84881217919064,6.94344616914154,7.90456714053216,8.85660887877613,6.12295038581362,5.79966670432462,22.5303996586233,4.17112764290235,4.91397487783007,2.69834534861824,2.63718157805054,3.37648023653384,3.56476192493988,5.4662266115654,12.1601420081277,5.76578967694971,11.5014565221884,8.55924179637558,13.1055822708115,18.4382580901392,18.1191387657131,24.1221760681684,13.8564892624954,6.63219941196697,5.21487924614483,6.62005834523234,7.27539769694356,16.4156132292979,20.2337094753112,19.1230974900643,14.5024332577696,13.9522754478728,18.018388858296,14.7476983244164,13.296743603674,13.5970115066621,21.1107797514981,16.86107619838,17.7035138286853,24.2824336748165,34.5183768473753,30.9438852603416,10.6557714494839,69.9344468356113,22.7165917979705,22.645447169205,14.8642144435631,20.790285421872,18.4922899488387,16.9845918473299,17.8116708736954,23.380468632905,24.903130010631,24.4204200480573,20.1554920995741,7.47875535402472,7.00413925220377,39.5928295134085,14.6019652173959,8.25454162926937,4.53485335447127,9.05304382828311,12.993283286754,15.3717573971964,13.4382712447475,8.72480950746013,9.9819265947722,28.1272714562876,13.7044191147498,15.470331487228,26.5542892487955,3.96134406868882,4.2688365648309,14.1462443120851,13.1231772895282,14.2695054081656,12.8348236069654,25.2705907765117,17.3657063967146,28.3854974957519,23.5965385918809,16.3237390412065,5.9741837877485,4.82503399425247,7.04296829618505,8.86360858623331,9.32738677215522,38.0121869121545,9.3978984438819,7.01715351074956,6.11141940320049,3.57900068308913,5.74115756428306,5.49067615695654,26.6866135090353,26.8706788461423,25.2905952062096,8.59203556213602,5.852215881251,8.539417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|phase1_expression=15.0539916278506,5.58360652222978,5.0049916332849,2.41971369045464,6.01074875935617,15.7806515597176,12.3814699515629,19.8849918100027,102.353401004262,104.860907792253,29.2782725665614,29.8347874642558,14.7232627740837,10.0533462781847,7.66152452176024,5.26435695213547,5.59649502502517,10.2525203741427,15.0825876966313,15.2780274647291,17.3488311908182,5.16312946244604,7.05239430675126,1.91990907352088,3.21172993494038,6.31655160526522,5.59990595006797,6.67960821326256,1.14014051673824,2.77233142735924,2.66076612786366,41.9120244483357,48.590118219181,31.6963362030877,4.33277429626912,1.99481574430191,6.73758875665818,8.37063261473815,4.6880120671428,5.23523743973798,13.5293242247133,7.5135003345429,7.76816564849846,32.4813790376989,32.9475026463422,37.8106309453064,39.119567217402,9.81113203712009,7.90870257844099,16.7209713203884,18.4782076545479,21.5628846547457,29.5297386661616,37.7188313845899,29.2401605253944,7.46052364504246,7.44986943840768,10.8291139378263,64.3366345533521,80.935619828621,78.5950940347662,12.5372476865579,30.2360230677787,15.2982951937838,13.8441290759376,19.1829631035447,13.4820049733282,7.30014780110954,25.611334240194,27.5412114196649,24.3976955167603,20.5668708770739,31.5842013560807,28.0503930202245,21.4693855080849,38.6071890376209,57.2602581196821,94.1055681687833,78.4929384939404,72.801230827067,66.785979829759,69.2814782840491,24.2889209131201,38.2678574821542,46.2978690763735,37.7124589406295,34.7386901149811,53.6830403976866,36.9543823465938,29.3973368815396,30.1459068249745,21.5105969245347,60.5174486999898,24.8263468153396,25.9910566979068,25.9855594516455,19.3813299781818,22.1559419351475,17.9252343175979,18.3736578745377,26.0560326586859,71.862827352018,140.142881838655,170.656008756799,15.5873549528074,16.4683912558814,17.1878311305026,17.2417658375781,15.5362730188303,90.8465891076728,14.7462527751215,30.142082352902,32.2861696158482,41.147280870866,41.2736362046324,44.6116399220348,8.89901883843746,7.37456720291549,22.1152637987469,12.2942805960031,25.1759331044849,13.5765070877862,27.9587641827183,31.9131068742586,32.8831329697124,7.15279754584056,23.4837644031604,10.1983464268879,14.6130761134024,43.2894947879938,37.5150494311274,19.7277332817197,54.5808365403748,45.2616359474685,69.1934188383335,65.8699528055096,9.16554274652847,17.6657898266332,21.4814344668623,19.991976309215,3.3831315170303,4.82794419310293,6.84236093260327,8.13806016312861,6.46346741937615,6.27757229395764,7.12133106653939,18.3679393224701,1.72454394346274,3.59301552318857,5.98233822157426,4.82230611340665,5.28289773528636,6.96504333044333,7.40815691068596,9.75267907410617,7.72434506044558,12.610047448621,9.66155897945015,6.21377317606506,8.91199027928165,12.244220179349,13.494449928357,21.0537727969722,29.773552787264,50.2273320660881,48.8257590547307,47.7570250281723,32.4182904329557,36.9376794177964,38.1023404865522,40.7897964916677,43.470922827628,28.8543800334799,99.8877255679604,31.488811388061,2.31293148088659,2.90895623329899,7.89166526980366,9.52170354627798,9.665059599157,6.6555563125703,7.78323153457046,4.56541502670142,4.2707615539006,5.10566759644434,7.79139147280835,5.57078121715222,7.60359939764569,5.39291645192533,5.40345124686736,9.35963984295526,7.2073802362171,7.65465034485183,10.1436962105772,7.53509913027663,4.84881217919064,6.94344616914154,7.90456714053216,8.85660887877613,6.12295038581362,5.79966670432462,22.5303996586233,4.17112764290235,4.91397487783007,2.69834534861824,2.63718157805054,3.37648023653384,3.56476192493988,5.4662266115654,12.1601420081277,5.76578967694971,11.5014565221884,8.55924179637558,13.1055822708115,18.4382580901392,18.1191387657131,24.1221760681684,13.8564892624954,6.63219941196697,5.21487924614483,6.62005834523234,7.27539769694356,16.4156132292979,20.2337094753112,19.1230974900643,14.5024332577696,13.9522754478728,18.018388858296,14.7476983244164,13.296743603674,13.5970115066621,21.1107797514981,16.86107619838,17.7035138286853,24.2824336748165,34.5183768473753,30.9438852603416,10.6557714494839,69.9344468356113,22.7165917979705,22.645447169205,14.8642144435631,20.790285421872,18.4922899488387,16.9845918473299,17.8116708736954,23.380468632905,24.903130010631,24.4204200480573,20.1554920995741,7.47875535402472,7.00413925220377,39.5928295134085,14.6019652173959,8.25454162926937,4.53485335447127,9.05304382828311,12.993283286754,15.3717573971964,13.4382712447475,8.72480950746013,9.9819265947722,28.1272714562876,13.7044191147498,15.470331487228,26.5542892487955,3.96134406868882,4.2688365648309,14.1462443120851,13.1231772895282,14.2695054081656,12.8348236069654,25.2705907765117,17.3657063967146,28.3854974957519,23.5965385918809,16.3237390412065,5.9741837877485,4.82503399425247,7.04296829618505,8.86360858623331,9.32738677215522,38.0121869121545,9.3978984438819,7.01715351074956,6.11141940320049,3.57900068308913,5.74115756428306,5.49067615695654,26.6866135090353,26.8706788461423,25.2905952062096,8.59203556213602,5.852215881251,8.539417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| ||
|short_description=p1@Nt5dc3 | |short_description=p1@Nt5dc3 | ||
}} | }} |
Latest revision as of 12:48, 26 September 2015
Short description: | p1@Nt5dc3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Nt5dc3_5end |
Coexpression cluster: | MCL_coexpression_mm9:2598 |
Association with transcript: | 14bp_to_ENSMUST00000099396, NM_175331, uc007gqn.1_5end |
EntrezGene: | Nt5dc3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.31e-10 | 23 |
neuroblast (sensu Vertebrata) | 1.31e-10 | 23 |
neuron | 2.90e-10 | 33 |
neuronal stem cell | 2.90e-10 | 33 |
neuroblast | 2.90e-10 | 33 |
electrically signaling cell | 2.90e-10 | 33 |
ectodermal cell | 1.15e-09 | 44 |
neurectodermal cell | 1.15e-09 | 44 |
electrically responsive cell | 1.20e-09 | 39 |
electrically active cell | 1.20e-09 | 39 |
neural cell | 1.99e-09 | 43 |
embryonic cell | 9.08e-08 | 70 |
stem cell | 1.72e-07 | 97 |
Ontology term | p-value | n |
---|---|---|
nervous system | 8.57e-18 | 75 |
central nervous system | 4.96e-17 | 73 |
regional part of nervous system | 7.42e-15 | 54 |
structure with developmental contribution from neural crest | 1.25e-13 | 92 |
neural tube | 1.71e-13 | 52 |
neural rod | 1.71e-13 | 52 |
future spinal cord | 1.71e-13 | 52 |
neural keel | 1.71e-13 | 52 |
gray matter | 3.94e-13 | 34 |
ectoderm-derived structure | 2.14e-12 | 95 |
ectoderm | 2.14e-12 | 95 |
presumptive ectoderm | 2.14e-12 | 95 |
brain | 1.55e-11 | 47 |
future brain | 1.55e-11 | 47 |
brain grey matter | 2.03e-11 | 29 |
regional part of telencephalon | 2.03e-11 | 29 |
telencephalon | 2.03e-11 | 29 |
regional part of brain | 2.45e-11 | 46 |
anatomical conduit | 1.20e-10 | 122 |
anterior neural tube | 5.57e-10 | 40 |
regional part of forebrain | 1.52e-09 | 39 |
forebrain | 1.52e-09 | 39 |
future forebrain | 1.52e-09 | 39 |
neurectoderm | 1.77e-09 | 64 |
neural plate | 1.77e-09 | 64 |
presumptive neural plate | 1.77e-09 | 64 |
tube | 3.28e-09 | 114 |
cerebral cortex | 3.11e-08 | 21 |
cerebral hemisphere | 3.11e-08 | 21 |
pallium | 3.11e-08 | 21 |
ecto-epithelium | 4.77e-08 | 73 |
regional part of cerebral cortex | 3.91e-07 | 17 |