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MCL coexpression mm9:2926: Difference between revisions

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|coexpression_dpi_cluster_scores_median=0.064513712786576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376624368002771,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.873560458415439,0.866162749678567,0.934800173099902,0,0,0,0,0,0,0,0.330532627013832,0.371078836535995,0.238494624383285,0.477057103358911,0.405872009044185,0.582138891130751,0.725343592025448,0.747884995716671,0.732766388647999,0.58082481854121,0.538787879174733,0.968895385039557,0.915269149618372,0.828018102088692,0.714978619239262,0.641134440747991,0.537160477951037,0.393249215744114,0.496317222511774,0.639007108814568,0,0,0,0,0,0,0,0,0.0570741246689917,0,0,0,0.0572260417947564,0,0,0,0,0,0,0,0,0,0.0694776635602275,0,0,0.06097065795378,0,0,0,0,0,0,0,0,0,0.854208647920586,1.00926622188401,0,0,0,0,0.511463508169896,0.375206552143423,0.575695274021749,0.229245865416417,0.305966219492192,0.309404493414426,0.444771224149836,0,0,0,0.64019012289405,0.250596284664467,0.548422243633989,0.499789536222348,0.807898373890336,0.968504097548043,0.932408285627212,1.10423833034008,1.0241581698393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238461590244593,0.235612340118493,0,0,0.0573340996049099,0,0.0526429550379996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441861045255014,0.402046663331577,0,0,0.21245833826791,0,0.155593135195239,0,0.060725066822874,0,0.257587724242375,0.111348509539896,0,0.358940419539848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160942512722203,0.0999282245587464,0.15493316250826,0,0.0712812415377886,0.123557017950668,0,0,0,0,0,0,0,0,0,0,0.48282762626599,0,0,0,0,0,0,0,0,0,0,0,0.0803809427109337,0,0,0,0,0.00785957414575065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0801664161057822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328278395983124,0.283448337556827,0,0.486038968127383,0,0.487410447828113,0.224020645200257,0.371245906776716,0.162308177550168,0,0.210244682285048,0.449784968062859,0.432542167435554,0.0945084131504676,0.211878289366281,0.073294297058821,0.0871588832444397,0.081359932135904,0,0.17765030293269,0.178101321237085,0.168128314215021,0.218926706622134,0.214910449956623,0.197102582129624,0.169172763866184,0.257964079200789,0.141706336142815,0.14986111676545,0.112067779638927,0.200160314545983,0.314889525375005,0.092873634605593,0.157166310227119,0.194418948264644,0.224511532029221,0.135404897539632,0.252661106676919,0.290174631369355,0.193442483447008,0.168656579551575,0.17392086126324,0.347855365433585,0.285472027502138,0.0766064454112358,0.351999668610516,0.166685587652774,0.216063761676531,0,0.0865703124974023,0
|coexpression_dpi_cluster_scores_median=0.064513712786576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376624368002771,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.873560458415439,0.866162749678567,0.934800173099902,0,0,0,0,0,0,0,0.330532627013832,0.371078836535995,0.238494624383285,0.477057103358911,0.405872009044185,0.582138891130751,0.725343592025448,0.747884995716671,0.732766388647999,0.58082481854121,0.538787879174733,0.968895385039557,0.915269149618372,0.828018102088692,0.714978619239262,0.641134440747991,0.537160477951037,0.393249215744114,0.496317222511774,0.639007108814568,0,0,0,0,0,0,0,0,0.0570741246689917,0,0,0,0.0572260417947564,0,0,0,0,0,0,0,0,0,0.0694776635602275,0,0,0.06097065795378,0,0,0,0,0,0,0,0,0,0.854208647920586,1.00926622188401,0,0,0,0,0.511463508169896,0.375206552143423,0.575695274021749,0.229245865416417,0.305966219492192,0.309404493414426,0.444771224149836,0,0,0,0.64019012289405,0.250596284664467,0.548422243633989,0.499789536222348,0.807898373890336,0.968504097548043,0.932408285627212,1.10423833034008,1.0241581698393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238461590244593,0.235612340118493,0,0,0.0573340996049099,0,0.0526429550379996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441861045255014,0.402046663331577,0,0,0.21245833826791,0,0.155593135195239,0,0.060725066822874,0,0.257587724242375,0.111348509539896,0,0.358940419539848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160942512722203,0.0999282245587464,0.15493316250826,0,0.0712812415377886,0.123557017950668,0,0,0,0,0,0,0,0,0,0,0.48282762626599,0,0,0,0,0,0,0,0,0,0,0,0.0803809427109337,0,0,0,0,0.00785957414575065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0801664161057822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328278395983124,0.283448337556827,0,0.486038968127383,0,0.487410447828113,0.224020645200257,0.371245906776716,0.162308177550168,0,0.210244682285048,0.449784968062859,0.432542167435554,0.0945084131504676,0.211878289366281,0.073294297058821,0.0871588832444397,0.081359932135904,0,0.17765030293269,0.178101321237085,0.168128314215021,0.218926706622134,0.214910449956623,0.197102582129624,0.169172763866184,0.257964079200789,0.141706336142815,0.14986111676545,0.112067779638927,0.200160314545983,0.314889525375005,0.092873634605593,0.157166310227119,0.194418948264644,0.224511532029221,0.135404897539632,0.252661106676919,0.290174631369355,0.193442483447008,0.168656579551575,0.17392086126324,0.347855365433585,0.285472027502138,0.0766064454112358,0.351999668610516,0.166685587652774,0.216063761676531,0,0.0865703124974023,0
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000117!2.30e-21!23;CL:0000337!2.30e-21!23;CL:0000540!5.24e-19!33;CL:0000047!5.24e-19!33;CL:0000031!5.24e-19!33;CL:0000404!5.24e-19!33;CL:0000393!2.06e-14!39;CL:0000211!2.06e-14!39;CL:0000221!2.33e-12!44;CL:0000133!2.33e-12!44;CL:0002319!4.16e-12!43;CL:0000055!2.02e-09!49
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002346!1.91e-31!64;UBERON:0003075!1.91e-31!64;UBERON:0007284!1.91e-31!64;UBERON:0004121!7.13e-28!95;UBERON:0000924!7.13e-28!95;UBERON:0006601!7.13e-28!95;UBERON:0010371!4.98e-27!73;UBERON:0001017!3.27e-26!73;UBERON:0001016!5.51e-25!75;UBERON:0000073!1.78e-24!54;UBERON:0003056!5.71e-24!49;UBERON:0001049!1.36e-22!52;UBERON:0005068!1.36e-22!52;UBERON:0006241!1.36e-22!52;UBERON:0007135!1.36e-22!52;UBERON:0010314!6.99e-19!92;UBERON:0000955!1.52e-18!47;UBERON:0006238!1.52e-18!47;UBERON:0002020!4.10e-18!34;UBERON:0002616!7.31e-18!46;UBERON:0003080!6.30e-16!40;UBERON:0002780!3.80e-15!39;UBERON:0001890!3.80e-15!39;UBERON:0006240!3.80e-15!39;UBERON:0003528!3.23e-14!29;UBERON:0002791!3.23e-14!29;UBERON:0001893!3.23e-14!29;UBERON:0000970!1.17e-09!9;UBERON:0000019!1.17e-09!9;UBERON:0000047!1.17e-09!9;UBERON:0010312!1.17e-09!9;UBERON:0004088!1.17e-09!9;UBERON:0002104!1.17e-09!9;UBERON:0001456!1.17e-09!9;UBERON:0003072!1.17e-09!9;UBERON:0004128!1.17e-09!9;UBERON:0003071!1.17e-09!9;UBERON:0002420!1.16e-08!8;UBERON:0007245!1.16e-08!8;UBERON:0010009!1.16e-08!8;UBERON:0010011!1.16e-08!8;UBERON:0000454!1.16e-08!8;UBERON:0000020!1.24e-08!12;UBERON:0001032!1.24e-08!12;UBERON:0004456!1.24e-08!12;UBERON:0000956!9.63e-08!21;UBERON:0001869!9.63e-08!21;UBERON:0000203!9.63e-08!21;UBERON:0000033!1.07e-07!13;UBERON:0005085!1.07e-07!13;UBERON:0003076!2.10e-07!12;UBERON:0003057!2.10e-07!12;UBERON:0001444!2.41e-07!11
}}
}}

Revision as of 19:15, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr14:65206126..65206142,+p@chr14:65206126..65206142
+
Mm9::chr14:65206160..65206173,+p@chr14:65206160..65206173
+
Mm9::chr4:136512699..136512786,-p1@Epha8


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
neurectoderm1.91e-3164
neural plate1.91e-3164
presumptive neural plate1.91e-3164
ectoderm-derived structure7.13e-2895
ectoderm7.13e-2895
presumptive ectoderm7.13e-2895
ecto-epithelium4.98e-2773
central nervous system3.27e-2673
nervous system5.51e-2575
regional part of nervous system1.78e-2454
pre-chordal neural plate5.71e-2449
neural tube1.36e-2252
neural rod1.36e-2252
future spinal cord1.36e-2252
neural keel1.36e-2252
structure with developmental contribution from neural crest6.99e-1992
brain1.52e-1847
future brain1.52e-1847
gray matter4.10e-1834
regional part of brain7.31e-1846
anterior neural tube6.30e-1640
regional part of forebrain3.80e-1539
forebrain3.80e-1539
future forebrain3.80e-1539
brain grey matter3.23e-1429
regional part of telencephalon3.23e-1429
telencephalon3.23e-1429
eye1.17e-099
camera-type eye1.17e-099
simple eye1.17e-099
immature eye1.17e-099
ocular region1.17e-099
visual system1.17e-099
face1.17e-099
optic cup1.17e-099
optic vesicle1.17e-099
eye primordium1.17e-099
basal ganglion1.16e-088
nuclear complex of neuraxis1.16e-088
aggregate regional part of brain1.16e-088
collection of basal ganglia1.16e-088
cerebral subcortex1.16e-088
sense organ1.24e-0812
sensory system1.24e-0812
entire sense organ system1.24e-0812
cerebral cortex9.63e-0821
cerebral hemisphere9.63e-0821
pallium9.63e-0821
head1.07e-0713
ectodermal placode1.07e-0713
posterior neural tube2.10e-0712
chordal neural plate2.10e-0712
subdivision of head2.41e-0711


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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