FFCP PHASE1:Mm9::chr2:58419771..58419819,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=76654|HGNC=|UniProt=A2APN2|association_with_transcript=0bp_to_ENSMUST00000071543,uc008jsv.1_5end|description=CAGE_peak_3_at_Upp2_5end|id=chr2:58419771..58419819,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.49e-20!73;UBERON:0005743!1.49e-20!73;UBERON:0000073!7.40e-20!75;UBERON:0001016!7.40e-20!75;UBERON:0004121!2.73e-18!102;UBERON:0000924!2.73e-18!102;UBERON:0006601!2.73e-18!102;UBERON:0002346!4.85e-17!71;UBERON:0003075!4.85e-17!71;UBERON:0007284!4.85e-17!71;UBERON:0001049!8.97e-15!52;UBERON:0005068!8.97e-15!52;UBERON:0006241!8.97e-15!52;UBERON:0007135!8.97e-15!52;UBERON:0000955!9.12e-15!50;UBERON:0006238!9.12e-15!50;UBERON:0002616!2.46e-14!49;UBERON:0000033!4.93e-14!63;UBERON:0003080!2.49e-12!40;UBERON:0000025!3.79e-12!114;UBERON:0004111!4.85e-12!122;UBERON:0002780!9.51e-12!39;UBERON:0001890!9.51e-12!39;UBERON:0006240!9.51e-12!39;UBERON:0003056!1.31e-11!49;UBERON:0000956!3.30e-08!21;UBERON:0001869!3.30e-08!21;UBERON:0000203!3.30e-08!21;UBERON:0002020!5.87e-08!34;UBERON:0002791!6.89e-08!29;UBERON:0003528!6.89e-08!29;UBERON:0001893!6.89e-08!29;UBERON:0002021!7.27e-07!10;UBERON:0000411!7.27e-07!10;UBERON:0001950!7.27e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.74e-21,73;UBERON:0010314,1.86e-20,92;UBERON:0001016,6.24e-20,75;UBERON:0004121,5.41e-15,95;UBERON:0000924,5.41e-15,95;UBERON:0006601,5.41e-15,95;UBERON:0002346,6.12e-15,64;UBERON:0003075,6.12e-15,64;UBERON:0007284,6.12e-15,64;UBERON:0001049,6.77e-15,52;UBERON:0005068,6.77e-15,52;UBERON:0006241,6.77e-15,52;UBERON:0007135,6.77e-15,52;UBERON:0000955,8.56e-15,47;UBERON:0006238,8.56e-15,47;UBERON:0000073,1.58e-14,54;UBERON:0002616,2.41e-14,46;UBERON:0003080,1.84e-12,40;UBERON:0002780,7.42e-12,39;UBERON:0001890,7.42e-12,39;UBERON:0006240,7.42e-12,39;UBERON:0010371,1.44e-11,73;UBERON:0003056,1.77e-11,49;UBERON:0000025,3.15e-11,114;UBERON:0004111,8.76e-11,122;UBERON:0000956,3.10e-08,21;UBERON:0001869,3.10e-08,21;UBERON:0000203,3.10e-08,21;UBERON:0003528,7.82e-08,29;UBERON:0002791,7.82e-08,29;UBERON:0001893,7.82e-08,29;UBERON:0002020,8.22e-08,34;UBERON:0002021,3.78e-07,10;UBERON:0000411,3.78e-07,10;UBERON:0001950,3.78e-07,10|phase1_expression=1.92178616525753,0.348975407639361,0,0.30246421130683,0,0.16787927191189,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0.137114433605739,0,1.02051948181284,0,0,0.319984845586813,0.22940928106717,0.57423196411502,0,0.430942465371778,0.380046838912748,0.504060259519861,0.221730510655305,0,0,0,0,0.831173226792462,1.02084678131185,0,0,0,0,0,0,0.881277725829041,1.11514624341466,1.83546752161682,3.12956537739216,2.18025156380447,1.31811709640683,2.52758868796568,3.07970127575798,5.75010257459886,0,0,0,0.771778308107841,1.43266719969378,1.54701627683233,2.02316460859598,0.528990979272033,1.90149421051854,3.72728985276045,0.889294796111139,0.899899717281399,0,0.7104801149461,2.99600110518405,6.53171119046643,3.94020526772215,4.45519596494579,4.83747411108179,3.42781181284564,2.87129103237098,1.34739879136449,1.15014565221884,0.919218786610021,2.20231761998777,2.17068474744819,1.84327839907492,1.84640802822271,1.64677758484337,1.04182674111352,2.79182999001381,0.56276261003168,2.90316670775939,0.589257170947335,1.28134512719193,2.23679334990361,0.681535739998656,1.51143120213571,3.76823835312181,3.44169550792555,0,0.539703191637817,0,0,1.40444420131752,3.2381761289831,3.89679006904303,3.5333957451034,1.83096445709685,1.28326477414318,10.1922095882658,0,0.865964164044856,0.506719730950197,1.01104889002957,1.1418387971906,0.776813650941515,2.82040064223167,3.12273588179045,1.52232739156071,3.22861696158482,2.41156224884196,1.99900802130698,5.02666365318702,0.494389935468748,1.01219549843938,0.884610551949874,1.29413479957927,0.883366073841574,1.45462575940567,0,3.51336956413857,1.67557365450764,0.255457055208591,0.11981512450592,0.599902730993408,0,4.94309110035915,4.11750542536764,1.50785222535437,7.12679712788333,7.16003280524926,3.32460871295296,4.54275536589721,1.62942982160506,1.61729061793121,0.758168275301024,3.15662783829711,1.30120442962704,0.919608417733892,1.62055916824814,1.80845781402858,1.29269348387523,1.2811372028485,1.78033276663485,2.58703370739016,1.07783996466421,0.567318240503458,2.81521798662318,2.19195732427575,1.66828349535359,1.39300866608867,1.64625709126355,3.18454826909589,0,0,0,2.48550927042602,2.34526059981096,2.52086886045421,3.31442629819294,3.73852040320067,3.23960937063494,3.48800917125612,1.60964040839772,2.10177616260905,1.81015834904829,2.79084688934462,2.75633952455909,1.90059983652932,1.3173006917463,2.28150911892632,7.14985825118033,2.57261530948211,0,0.264450566663544,1.06644125267617,1.85789337488351,1.9330119198314,1.21010114774006,0.889512175379481,1.52180500890047,0.474529061544512,1.15289268306808,1.00534083520108,0.795825888164603,1.55971269695296,0.898819408654221,0.648414149624083,0.398282546508734,1.89667900953082,2.17072173958485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| ||
|EntrezGene=76654 | |||
|HGNC= | |||
|UniProt=A2APN2 | |||
|association_with_transcript=0bp_to_ENSMUST00000071543,uc008jsv.1_5end | |||
|description=CAGE_peak_3_at_Upp2_5end | |||
|id=chr2:58419771..58419819,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.49e-20!73;UBERON:0005743!1.49e-20!73;UBERON:0000073!7.40e-20!75;UBERON:0001016!7.40e-20!75;UBERON:0004121!2.73e-18!102;UBERON:0000924!2.73e-18!102;UBERON:0006601!2.73e-18!102;UBERON:0002346!4.85e-17!71;UBERON:0003075!4.85e-17!71;UBERON:0007284!4.85e-17!71;UBERON:0001049!8.97e-15!52;UBERON:0005068!8.97e-15!52;UBERON:0006241!8.97e-15!52;UBERON:0007135!8.97e-15!52;UBERON:0000955!9.12e-15!50;UBERON:0006238!9.12e-15!50;UBERON:0002616!2.46e-14!49;UBERON:0000033!4.93e-14!63;UBERON:0003080!2.49e-12!40;UBERON:0000025!3.79e-12!114;UBERON:0004111!4.85e-12!122;UBERON:0002780!9.51e-12!39;UBERON:0001890!9.51e-12!39;UBERON:0006240!9.51e-12!39;UBERON:0003056!1.31e-11!49;UBERON:0000956!3.30e-08!21;UBERON:0001869!3.30e-08!21;UBERON:0000203!3.30e-08!21;UBERON:0002020!5.87e-08!34;UBERON:0002791!6.89e-08!29;UBERON:0003528!6.89e-08!29;UBERON:0001893!6.89e-08!29;UBERON:0002021!7.27e-07!10;UBERON:0000411!7.27e-07!10;UBERON:0001950!7.27e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.74e-21,73;UBERON:0010314,1.86e-20,92;UBERON:0001016,6.24e-20,75;UBERON:0004121,5.41e-15,95;UBERON:0000924,5.41e-15,95;UBERON:0006601,5.41e-15,95;UBERON:0002346,6.12e-15,64;UBERON:0003075,6.12e-15,64;UBERON:0007284,6.12e-15,64;UBERON:0001049,6.77e-15,52;UBERON:0005068,6.77e-15,52;UBERON:0006241,6.77e-15,52;UBERON:0007135,6.77e-15,52;UBERON:0000955,8.56e-15,47;UBERON:0006238,8.56e-15,47;UBERON:0000073,1.58e-14,54;UBERON:0002616,2.41e-14,46;UBERON:0003080,1.84e-12,40;UBERON:0002780,7.42e-12,39;UBERON:0001890,7.42e-12,39;UBERON:0006240,7.42e-12,39;UBERON:0010371,1.44e-11,73;UBERON:0003056,1.77e-11,49;UBERON:0000025,3.15e-11,114;UBERON:0004111,8.76e-11,122;UBERON:0000956,3.10e-08,21;UBERON:0001869,3.10e-08,21;UBERON:0000203,3.10e-08,21;UBERON:0003528,7.82e-08,29;UBERON:0002791,7.82e-08,29;UBERON:0001893,7.82e-08,29;UBERON:0002020,8.22e-08,34;UBERON:0002021,3.78e-07,10;UBERON:0000411,3.78e-07,10;UBERON:0001950,3.78e-07,10 | |||
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| |||
|short_description=p3@Upp2 | |||
}} |
Revision as of 00:11, 14 September 2013
Short description: | p3@Upp2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Upp2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000071543, uc008jsv.1_5end |
EntrezGene: | Upp2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
central nervous system | 7.74e-21 | 73 |
structure with developmental contribution from neural crest | 1.86e-20 | 92 |
nervous system | 6.24e-20 | 75 |
ectoderm-derived structure | 5.41e-15 | 95 |
ectoderm | 5.41e-15 | 95 |
presumptive ectoderm | 5.41e-15 | 95 |
neurectoderm | 6.12e-15 | 64 |
neural plate | 6.12e-15 | 64 |
presumptive neural plate | 6.12e-15 | 64 |
neural tube | 6.77e-15 | 52 |
neural rod | 6.77e-15 | 52 |
future spinal cord | 6.77e-15 | 52 |
neural keel | 6.77e-15 | 52 |
brain | 8.56e-15 | 47 |
future brain | 8.56e-15 | 47 |
regional part of nervous system | 1.58e-14 | 54 |
regional part of brain | 2.41e-14 | 46 |
anterior neural tube | 1.84e-12 | 40 |
regional part of forebrain | 7.42e-12 | 39 |
forebrain | 7.42e-12 | 39 |
future forebrain | 7.42e-12 | 39 |
ecto-epithelium | 1.44e-11 | 73 |
pre-chordal neural plate | 1.77e-11 | 49 |
tube | 3.15e-11 | 114 |
anatomical conduit | 8.76e-11 | 122 |
cerebral cortex | 3.10e-08 | 21 |
cerebral hemisphere | 3.10e-08 | 21 |
pallium | 3.10e-08 | 21 |
brain grey matter | 7.82e-08 | 29 |
regional part of telencephalon | 7.82e-08 | 29 |
telencephalon | 7.82e-08 | 29 |
gray matter | 8.22e-08 | 34 |
occipital lobe | 3.78e-07 | 10 |
visual cortex | 3.78e-07 | 10 |
neocortex | 3.78e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.