FFCP PHASE1:Mm9::chr1:79436578..79436589,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=20254|HGNC=|MCL_coexpression_id=608|UniProt=Q4W8U9|association_with_transcript=-13bp_to_ENSMUST00000094810_5end|description=CAGE_peak_3_at_Scg2_5end|id=chr1:79436578..79436589,-|ontology_enrichment_celltype=CL:0000540!1.57e-09!33;CL:0000047!1.57e-09!33;CL:0000031!1.57e-09!33;CL:0000404!1.57e-09!33;CL:0000393!6.85e-09!39;CL:0000211!6.85e-09!39;CL:0000117!4.86e-07!23;CL:0000337!4.86e-07!23|ontology_enrichment_celltype_v019_2=CL:0000540,5.73e-10,33;CL:0000047,5.73e-10,33;CL:0000031,5.73e-10,33;CL:0000404,5.73e-10,33;CL:0000393,7.63e-09,39;CL:0000211,7.63e-09,39;CL:0000117,9.09e-08,23;CL:0000337,9.09e-08,23;CL:0002319,2.71e-07,43;CL:0000221,5.99e-07,44;CL:0000133,5.99e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!4.74e-26!71;UBERON:0003075!4.74e-26!71;UBERON:0007284!4.74e-26!71;UBERON:0004121!3.43e-25!102;UBERON:0000924!3.43e-25!102;UBERON:0006601!3.43e-25!102;UBERON:0000073!3.00e-24!75;UBERON:0001016!3.00e-24!75;UBERON:0001017!2.50e-23!73;UBERON:0005743!2.50e-23!73;UBERON:0001049!2.52e-19!52;UBERON:0005068!2.52e-19!52;UBERON:0006241!2.52e-19!52;UBERON:0007135!2.52e-19!52;UBERON:0000955!5.31e-19!50;UBERON:0006238!5.31e-19!50;UBERON:0000033!2.26e-18!63;UBERON:0002616!3.08e-18!49;UBERON:0003056!3.55e-16!49;UBERON:0003080!3.54e-15!40;UBERON:0002780!1.94e-14!39;UBERON:0001890!1.94e-14!39;UBERON:0006240!1.94e-14!39;UBERON:0002020!1.25e-10!34;UBERON:0002791!2.14e-08!29;UBERON:0003528!2.14e-08!29;UBERON:0001893!2.14e-08!29;UBERON:0007811!5.47e-08!86;UBERON:0001894!7.14e-08!10;UBERON:0006222!7.14e-08!10;UBERON:0002021!3.57e-07!10;UBERON:0000411!3.57e-07!10;UBERON:0001950!3.57e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.92e-30,75;UBERON:0001017,4.39e-29,73;UBERON:0000073,3.79e-26,54;UBERON:0004121,2.56e-24,95;UBERON:0000924,2.56e-24,95;UBERON:0006601,2.56e-24,95;UBERON:0002346,2.99e-24,64;UBERON:0003075,2.99e-24,64;UBERON:0007284,2.99e-24,64;UBERON:0001049,3.17e-24,52;UBERON:0005068,3.17e-24,52;UBERON:0006241,3.17e-24,52;UBERON:0007135,3.17e-24,52;UBERON:0000955,4.70e-21,47;UBERON:0006238,4.70e-21,47;UBERON:0002616,4.16e-20,46;UBERON:0010371,5.68e-19,73;UBERON:0010314,1.38e-18,92;UBERON:0003080,1.91e-18,40;UBERON:0003056,3.53e-18,49;UBERON:0002780,1.65e-17,39;UBERON:0001890,1.65e-17,39;UBERON:0006240,1.65e-17,39;UBERON:0002020,1.09e-12,34;UBERON:0003528,7.21e-10,29;UBERON:0002791,7.21e-10,29;UBERON:0001893,7.21e-10,29;UBERON:0001894,1.23e-09,10;UBERON:0006222,1.23e-09,10;UBERON:0002021,9.58e-09,10;UBERON:0000411,9.58e-09,10;UBERON:0001950,9.58e-09,10;UBERON:0000007,8.69e-08,8;UBERON:0003296,8.69e-08,8;UBERON:0010133,8.69e-08,8;UBERON:0002369,3.66e-07,7;UBERON:0006858,3.66e-07,7|phase1_expression=0.160148847104794,0,0,0,0,0.839396359559449,1.40167584357315,0,0,0,0,0,0,0,0,0,0,0,0,0,3.40173160604279,0,0,0.159992422793407,0,0,0,0.430942465371778,0.570070258369122,1.00812051903972,0.443461021310609,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,3.27331726736501,1.92616169317078,0.183546752161682,0,0,0,0,0,0,0,0,0,0,0.286533439938757,0,1.61853168687678,3.1739458756322,1.26766280701236,0,0,0,0,0,0,0,0.103689612308478,0,0,2.85650984403804,3.75476519617743,0.122490799214954,0.0958454710182364,1.83843757322004,19.82085857989,30.1342117881043,32.7181915835799,1.58263545276233,1.64677758484337,1.04182674111352,23.1721889171146,59.6528366633581,49.9650270230169,11.490514833473,13.0981946335175,3.72798891650601,1.81742863999642,5.2144376473682,0,0,0,0,0,0,2.38755514223978,0,0,0,0.14084341977668,0,0,0,0,0,0,0.68510327831436,0,82.9791557372371,4.16364784238726,8.22056791442781,14.2981608298756,26.9793526589194,39.6273943047325,29.2803157798144,0,0,0,0,0,0,0,9.07620470735796,10.2628886338593,0.766371165625774,0,0,0,38.9455662452539,20.1300265240196,3.76963056338593,15.6441888173049,15.8543583544805,32.8305110404105,27.7432559845866,0,0,0,10.3116509384372,0.130120442962704,0,0.360124259610698,0.60281927134286,1.7009124787832,1.66547836370305,1.59292931751539,18.6266426932091,0,0,0,0.219195732427575,0,0,0,0,0,0,0,0,0.234526059981096,0,0,0,0,0,0,0,0,0,0,0,0,0,11.7762371195911,1.64647379806855,0.991256348951394,0.793351699990633,0.213288250535234,0,0.38660238396628,1.21010114774006,0.667134131534611,0.380451252225118,1.89811624617805,0.988193728344065,3.01602250560323,3.58121649674071,3.31438948102504,0,2.16138049874694,0.995706366271836,0,0.913988100877831,0,0.407302655690628,0.193952487167626,0.280543279561274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167506257441816,0,0.195133647857799,0.157635144106191,0,0,0,0,0,0,0,0,0,27.9358026578758,29.7717683944196,0,0,1.57754109708128,0.390438744296638,2.58508077279359,2.15071918157297,3.34198011123591,4.24614796183249,1.21443210502468,4.67609372658099,2.76701444562566,38.5585579706168,0,0,0,0,5.30980553359851,0.242780636154981,0.906970670894253,1.88605079755898,2.95301892880773,3.99665692327106,7.75284879504663,6.5436071305951,6.41695281092498,5.37262488490887,2.10837217149998,1.03135543248187,116.430345167795,2.70091641046965,6.46793418913772,18.2186479776853,29.0837983173329,26.5769538227085,27.4796864405542,24.6616608782825,0,0,0.441056796109924,0,0.161464426695906,0.0603129249281559,0,0,2.91480836629851,26.1449675834819,0,0,0,0,0,0,0,0,0,0,0,0.203319467126849,0.216010681643603,0.836353184057875,0.655087691238533,1.21377911746339,1.90102948168273,0.523511883968059,1.03691978633434,0,0,0,0,0,0.129159823477731,0,0,0,0,0,0,0,0,0,0,0,0.198681354781265,0,0,0,0,0,0,0,0,0,0,0,0,0.965947970160952,0,0,0,0,12.9892923801925,15.651058041244,16.6139698897425,10.4830441229649,8.22099023724771,15.107877947794,9.45031500324528,18.463169332193,17.2194115413998,14.497288729051,0,0.399024873401031,0.341467211508268,0.486213434136588,0.419226325255965,0.551530525350042,1.77797382241292,1.03017528619447,1.28367683836726,1.51618327058278,1.01391719956096,0.754505365544305,1.49826411951812,0.89635213366817,1.43588672389033,0.952587382566147,0.927074607558844,1.73618298417335,0.824171801606613,2.20798380201596,3.08582327146874,1.06485483695602,0.715308569841963,0.872078499793971,1.50575008664529,1.18460451048347,1.46342378298218,2.10455769150274,1.22223702461276,0.561142271657738,0.949080144993393,1.18205378850676,1.63692417267876,1.23949472948773,0.578719832943424,1.24905288968973,0.701794825336225,1.50409737833809,0.765153328275374,0.441182838239031,0|short_description=p3@Scg2}} | ||
|EntrezGene=20254 | |||
|HGNC= | |||
|MCL_coexpression_id=608 | |||
|UniProt=Q4W8U9 | |||
|association_with_transcript=-13bp_to_ENSMUST00000094810_5end | |||
|description=CAGE_peak_3_at_Scg2_5end | |||
|id=chr1:79436578..79436589,- | |||
|ontology_enrichment_celltype=CL:0000540!1.57e-09!33;CL:0000047!1.57e-09!33;CL:0000031!1.57e-09!33;CL:0000404!1.57e-09!33;CL:0000393!6.85e-09!39;CL:0000211!6.85e-09!39;CL:0000117!4.86e-07!23;CL:0000337!4.86e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,5.73e-10,33;CL:0000047,5.73e-10,33;CL:0000031,5.73e-10,33;CL:0000404,5.73e-10,33;CL:0000393,7.63e-09,39;CL:0000211,7.63e-09,39;CL:0000117,9.09e-08,23;CL:0000337,9.09e-08,23;CL:0002319,2.71e-07,43;CL:0000221,5.99e-07,44;CL:0000133,5.99e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!4.74e-26!71;UBERON:0003075!4.74e-26!71;UBERON:0007284!4.74e-26!71;UBERON:0004121!3.43e-25!102;UBERON:0000924!3.43e-25!102;UBERON:0006601!3.43e-25!102;UBERON:0000073!3.00e-24!75;UBERON:0001016!3.00e-24!75;UBERON:0001017!2.50e-23!73;UBERON:0005743!2.50e-23!73;UBERON:0001049!2.52e-19!52;UBERON:0005068!2.52e-19!52;UBERON:0006241!2.52e-19!52;UBERON:0007135!2.52e-19!52;UBERON:0000955!5.31e-19!50;UBERON:0006238!5.31e-19!50;UBERON:0000033!2.26e-18!63;UBERON:0002616!3.08e-18!49;UBERON:0003056!3.55e-16!49;UBERON:0003080!3.54e-15!40;UBERON:0002780!1.94e-14!39;UBERON:0001890!1.94e-14!39;UBERON:0006240!1.94e-14!39;UBERON:0002020!1.25e-10!34;UBERON:0002791!2.14e-08!29;UBERON:0003528!2.14e-08!29;UBERON:0001893!2.14e-08!29;UBERON:0007811!5.47e-08!86;UBERON:0001894!7.14e-08!10;UBERON:0006222!7.14e-08!10;UBERON:0002021!3.57e-07!10;UBERON:0000411!3.57e-07!10;UBERON:0001950!3.57e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.92e-30,75;UBERON:0001017,4.39e-29,73;UBERON:0000073,3.79e-26,54;UBERON:0004121,2.56e-24,95;UBERON:0000924,2.56e-24,95;UBERON:0006601,2.56e-24,95;UBERON:0002346,2.99e-24,64;UBERON:0003075,2.99e-24,64;UBERON:0007284,2.99e-24,64;UBERON:0001049,3.17e-24,52;UBERON:0005068,3.17e-24,52;UBERON:0006241,3.17e-24,52;UBERON:0007135,3.17e-24,52;UBERON:0000955,4.70e-21,47;UBERON:0006238,4.70e-21,47;UBERON:0002616,4.16e-20,46;UBERON:0010371,5.68e-19,73;UBERON:0010314,1.38e-18,92;UBERON:0003080,1.91e-18,40;UBERON:0003056,3.53e-18,49;UBERON:0002780,1.65e-17,39;UBERON:0001890,1.65e-17,39;UBERON:0006240,1.65e-17,39;UBERON:0002020,1.09e-12,34;UBERON:0003528,7.21e-10,29;UBERON:0002791,7.21e-10,29;UBERON:0001893,7.21e-10,29;UBERON:0001894,1.23e-09,10;UBERON:0006222,1.23e-09,10;UBERON:0002021,9.58e-09,10;UBERON:0000411,9.58e-09,10;UBERON:0001950,9.58e-09,10;UBERON:0000007,8.69e-08,8;UBERON:0003296,8.69e-08,8;UBERON:0010133,8.69e-08,8;UBERON:0002369,3.66e-07,7;UBERON:0006858,3.66e-07,7 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0.839396359559449,1.40167584357315,0,0,0,0,0,0,0,0,0,0,0,0,0,3.40173160604279,0,0,0.159992422793407,0,0,0,0.430942465371778,0.570070258369122,1.00812051903972,0.443461021310609,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,3.27331726736501,1.92616169317078,0.183546752161682,0,0,0,0,0,0,0,0,0,0,0.286533439938757,0,1.61853168687678,3.1739458756322,1.26766280701236,0,0,0,0,0,0,0,0.103689612308478,0,0,2.85650984403804,3.75476519617743,0.122490799214954,0.0958454710182364,1.83843757322004,19.82085857989,30.1342117881043,32.7181915835799,1.58263545276233,1.64677758484337,1.04182674111352,23.1721889171146,59.6528366633581,49.9650270230169,11.490514833473,13.0981946335175,3.72798891650601,1.81742863999642,5.2144376473682,0,0,0,0,0,0,2.38755514223978,0,0,0,0.14084341977668,0,0,0,0,0,0,0.68510327831436,0,82.9791557372371,4.16364784238726,8.22056791442781,14.2981608298756,26.9793526589194,39.6273943047325,29.2803157798144,0,0,0,0,0,0,0,9.07620470735796,10.2628886338593,0.766371165625774,0,0,0,38.9455662452539,20.1300265240196,3.76963056338593,15.6441888173049,15.8543583544805,32.8305110404105,27.7432559845866,0,0,0,10.3116509384372,0.130120442962704,0,0.360124259610698,0.60281927134286,1.7009124787832,1.66547836370305,1.59292931751539,18.6266426932091,0,0,0,0.219195732427575,0,0,0,0,0,0,0,0,0.234526059981096,0,0,0,0,0,0,0,0,0,0,0,0,0,11.7762371195911,1.64647379806855,0.991256348951394,0.793351699990633,0.213288250535234,0,0.38660238396628,1.21010114774006,0.667134131534611,0.380451252225118,1.89811624617805,0.988193728344065,3.01602250560323,3.58121649674071,3.31438948102504,0,2.16138049874694,0.995706366271836,0,0.913988100877831,0,0.407302655690628,0.193952487167626,0.280543279561274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167506257441816,0,0.195133647857799,0.157635144106191,0,0,0,0,0,0,0,0,0,27.9358026578758,29.7717683944196,0,0,1.57754109708128,0.390438744296638,2.58508077279359,2.15071918157297,3.34198011123591,4.24614796183249,1.21443210502468,4.67609372658099,2.76701444562566,38.5585579706168,0,0,0,0,5.30980553359851,0.242780636154981,0.906970670894253,1.88605079755898,2.95301892880773,3.99665692327106,7.75284879504663,6.5436071305951,6.41695281092498,5.37262488490887,2.10837217149998,1.03135543248187,116.430345167795,2.70091641046965,6.46793418913772,18.2186479776853,29.0837983173329,26.5769538227085,27.4796864405542,24.6616608782825,0,0,0.441056796109924,0,0.161464426695906,0.0603129249281559,0,0,2.91480836629851,26.1449675834819,0,0,0,0,0,0,0,0,0,0,0,0.203319467126849,0.216010681643603,0.836353184057875,0.655087691238533,1.21377911746339,1.90102948168273,0.523511883968059,1.03691978633434,0,0,0,0,0,0.129159823477731,0,0,0,0,0,0,0,0,0,0,0,0.198681354781265,0,0,0,0,0,0,0,0,0,0,0,0,0.965947970160952,0,0,0,0,12.9892923801925,15.651058041244,16.6139698897425,10.4830441229649,8.22099023724771,15.107877947794,9.45031500324528,18.463169332193,17.2194115413998,14.497288729051,0,0.399024873401031,0.341467211508268,0.486213434136588,0.419226325255965,0.551530525350042,1.77797382241292,1.03017528619447,1.28367683836726,1.51618327058278,1.01391719956096,0.754505365544305,1.49826411951812,0.89635213366817,1.43588672389033,0.952587382566147,0.927074607558844,1.73618298417335,0.824171801606613,2.20798380201596,3.08582327146874,1.06485483695602,0.715308569841963,0.872078499793971,1.50575008664529,1.18460451048347,1.46342378298218,2.10455769150274,1.22223702461276,0.561142271657738,0.949080144993393,1.18205378850676,1.63692417267876,1.23949472948773,0.578719832943424,1.24905288968973,0.701794825336225,1.50409737833809,0.765153328275374,0.441182838239031,0 | |||
|short_description=p3@Scg2 | |||
}} |
Revision as of 21:01, 13 September 2013
Short description: | p3@Scg2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Scg2_5end |
Coexpression cluster: | MCL_coexpression_mm9:608 |
Association with transcript: | -13bp_to_ENSMUST00000094810_5end |
EntrezGene: | Scg2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 5.73e-10 | 33 |
neuronal stem cell | 5.73e-10 | 33 |
neuroblast | 5.73e-10 | 33 |
electrically signaling cell | 5.73e-10 | 33 |
electrically responsive cell | 7.63e-09 | 39 |
electrically active cell | 7.63e-09 | 39 |
CNS neuron (sensu Vertebrata) | 9.09e-08 | 23 |
neuroblast (sensu Vertebrata) | 9.09e-08 | 23 |
neural cell | 2.71e-07 | 43 |
ectodermal cell | 5.99e-07 | 44 |
neurectodermal cell | 5.99e-07 | 44 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.