FFCP PHASE1:Mm9::chr13:24373093..24373146,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=68732|HGNC=|MCL_coexpression_id=2832|UniProt=Q6EDY6|association_with_transcript=-429bp_to_ENSMUST00000072889_5end|description=CAGE_peak_3_at_Lrrc16a_5end|id=chr13:24373093..24373146,-|ontology_enrichment_celltype=CL:0000117!5.06e-15!23;CL:0000337!5.06e-15!23;CL:0000540!2.44e-10!33;CL:0000047!2.44e-10!33;CL:0000031!2.44e-10!33;CL:0000404!2.44e-10!33;CL:0000393!1.04e-07!39;CL:0000211!1.04e-07!39;CL:0000221!9.76e-07!44;CL:0000133!9.76e-07!44|ontology_enrichment_celltype_v019_2=CL:0000117,5.21e-17,23;CL:0000337,5.21e-17,23;CL:0000540,1.04e-10,33;CL:0000047,1.04e-10,33;CL:0000031,1.04e-10,33;CL:0000404,1.04e-10,33;CL:0000393,7.81e-08,39;CL:0000211,7.81e-08,39;CL:0000221,6.25e-07,44;CL:0000133,6.25e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!3.03e-20!52;UBERON:0005068!3.03e-20!52;UBERON:0006241!3.03e-20!52;UBERON:0007135!3.03e-20!52;UBERON:0002346!2.45e-19!71;UBERON:0003075!2.45e-19!71;UBERON:0007284!2.45e-19!71;UBERON:0001017!4.03e-19!73;UBERON:0005743!4.03e-19!73;UBERON:0000955!7.39e-19!50;UBERON:0006238!7.39e-19!50;UBERON:0000033!1.16e-18!63;UBERON:0002616!3.24e-18!49;UBERON:0002020!4.05e-18!34;UBERON:0000073!7.86e-18!75;UBERON:0001016!7.86e-18!75;UBERON:0003056!5.65e-17!49;UBERON:0003080!1.29e-16!40;UBERON:0002780!3.92e-16!39;UBERON:0001890!3.92e-16!39;UBERON:0006240!3.92e-16!39;UBERON:0004121!1.18e-15!102;UBERON:0000924!1.18e-15!102;UBERON:0006601!1.18e-15!102;UBERON:0002791!1.31e-14!29;UBERON:0003528!1.31e-14!29;UBERON:0001893!1.31e-14!29;UBERON:0000153!2.97e-11!94;UBERON:0007811!9.48e-11!86;UBERON:0000956!2.41e-10!21;UBERON:0001869!2.41e-10!21;UBERON:0000203!2.41e-10!21;UBERON:0000468!8.44e-10!333;UBERON:0002619!2.65e-08!17;UBERON:0000922!5.91e-08!328;UBERON:0000025!1.18e-07!114;UBERON:0004111!3.52e-07!122;UBERON:0000475!8.46e-07!200|ontology_enrichment_uberon_v019_2=UBERON:0000073,4.51e-24,54;UBERON:0001049,2.40e-22,52;UBERON:0005068,2.40e-22,52;UBERON:0006241,2.40e-22,52;UBERON:0007135,2.40e-22,52;UBERON:0002346,9.35e-21,64;UBERON:0003075,9.35e-21,64;UBERON:0007284,9.35e-21,64;UBERON:0001017,1.90e-20,73;UBERON:0002020,3.80e-20,34;UBERON:0001016,3.78e-19,75;UBERON:0000955,8.45e-19,47;UBERON:0006238,8.45e-19,47;UBERON:0003056,1.11e-18,49;UBERON:0010371,1.48e-18,73;UBERON:0003080,3.94e-18,40;UBERON:0002616,4.38e-18,46;UBERON:0002780,1.40e-17,39;UBERON:0001890,1.40e-17,39;UBERON:0006240,1.40e-17,39;UBERON:0004121,7.38e-17,95;UBERON:0000924,7.38e-17,95;UBERON:0006601,7.38e-17,95;UBERON:0003528,3.89e-16,29;UBERON:0002791,3.89e-16,29;UBERON:0001893,3.89e-16,29;UBERON:0010314,6.91e-14,92;UBERON:0000956,2.93e-11,21;UBERON:0001869,2.93e-11,21;UBERON:0000203,2.93e-11,21;UBERON:0002619,6.26e-09,17;UBERON:0000025,1.77e-08,114;UBERON:0004111,8.29e-08,122;UBERON:0002021,2.32e-07,10;UBERON:0000411,2.32e-07,10;UBERON:0001950,2.32e-07,10|phase1_expression=3.20297694209588,0.697950815278722,0.454999239389536,0.60492842261366,0,0.503637815735669,1.40167584357315,0,0,0,0,0,0,0,0.999329285446988,0.607425802169478,0.699561878128147,0.946386496074713,0.959801035240171,0,1.19060606211498,0.397163804803541,0,0.319984845586813,0,0,0.430761996159075,0.646413698057667,0.570070258369122,0.504060259519861,0.886922042621219,0,0,0,0.577703239502549,0.332469290716985,0,0,0,0,0.588231488031014,0,0,0.629484089877886,0.101376931219515,0.183546752161682,0,0.65407546914134,0.659058548203415,1.1665793944457,1.81982348112971,0,0.503347818173209,0,0,0.771778308107841,1.71920063963254,0,7.68802551266472,7.93486468908049,15.8457850876545,0.677689064138264,0,0,0,0,0.898800331555214,0,5.70292867696627,9.31540974488665,5.25812403378455,21.1381728458815,18.1112203580323,14.0864419097197,12.172374819316,30.3342199581307,6.60695285996332,5.87361755191863,5.06901559745603,7.12185953743047,6.77008562657831,11.4600941522487,5.862842979029,2.8138130501584,4.73674568108111,22.0971439105251,13.810053037513,14.1663578827228,0.151452386666368,0.302286240427142,1.15945795480671,0,0.679971333707751,0,0,0,0.140444420131752,0.170430322578058,0.519572009205738,0,5.21120653173718,0,5.09610479413291,0,0.216491041011214,0.253359865475099,1.01104889002957,0.22836775943812,1.03575153458869,1.48442139064825,1.21439728736295,1.52232739156071,1.84492397804847,1.20578112442098,2.70454026412121,0.376999773989026,0.247194967734374,0.144599356919912,0,0.485300549842228,0.220841518460394,0.969750506270444,0,2.92780797011547,2.51336048176146,0,0,0,0,4.04434726393021,3.66000482254901,17.9685723521396,3.65031072403781,2.81287003063364,2.0778804455956,5.02947915510049,2.34230536855727,1.7416975885413,0.505445516867349,0.210441855886474,1.04096354370163,1.14951052216736,1.0803727788321,3.76762044589288,2.38127747029647,2.69038812598185,2.81105173679186,3.3631438196072,1.07783996466421,2.64748512234947,3.16712023495108,1.09597866213787,1.94633074457919,1.39300866608867,0.411564272815887,1.99034266818493,0,0,0,1.24275463521301,0.938104239924385,0.900310307305074,0.710234206755631,0.393528463494808,0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| ||
|EntrezGene=68732 | |||
|HGNC= | |||
|MCL_coexpression_id=2832 | |||
|UniProt=Q6EDY6 | |||
|association_with_transcript=-429bp_to_ENSMUST00000072889_5end | |||
|description=CAGE_peak_3_at_Lrrc16a_5end | |||
|id=chr13:24373093..24373146,- | |||
|ontology_enrichment_celltype=CL:0000117!5.06e-15!23;CL:0000337!5.06e-15!23;CL:0000540!2.44e-10!33;CL:0000047!2.44e-10!33;CL:0000031!2.44e-10!33;CL:0000404!2.44e-10!33;CL:0000393!1.04e-07!39;CL:0000211!1.04e-07!39;CL:0000221!9.76e-07!44;CL:0000133!9.76e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.21e-17,23;CL:0000337,5.21e-17,23;CL:0000540,1.04e-10,33;CL:0000047,1.04e-10,33;CL:0000031,1.04e-10,33;CL:0000404,1.04e-10,33;CL:0000393,7.81e-08,39;CL:0000211,7.81e-08,39;CL:0000221,6.25e-07,44;CL:0000133,6.25e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!3.03e-20!52;UBERON:0005068!3.03e-20!52;UBERON:0006241!3.03e-20!52;UBERON:0007135!3.03e-20!52;UBERON:0002346!2.45e-19!71;UBERON:0003075!2.45e-19!71;UBERON:0007284!2.45e-19!71;UBERON:0001017!4.03e-19!73;UBERON:0005743!4.03e-19!73;UBERON:0000955!7.39e-19!50;UBERON:0006238!7.39e-19!50;UBERON:0000033!1.16e-18!63;UBERON:0002616!3.24e-18!49;UBERON:0002020!4.05e-18!34;UBERON:0000073!7.86e-18!75;UBERON:0001016!7.86e-18!75;UBERON:0003056!5.65e-17!49;UBERON:0003080!1.29e-16!40;UBERON:0002780!3.92e-16!39;UBERON:0001890!3.92e-16!39;UBERON:0006240!3.92e-16!39;UBERON:0004121!1.18e-15!102;UBERON:0000924!1.18e-15!102;UBERON:0006601!1.18e-15!102;UBERON:0002791!1.31e-14!29;UBERON:0003528!1.31e-14!29;UBERON:0001893!1.31e-14!29;UBERON:0000153!2.97e-11!94;UBERON:0007811!9.48e-11!86;UBERON:0000956!2.41e-10!21;UBERON:0001869!2.41e-10!21;UBERON:0000203!2.41e-10!21;UBERON:0000468!8.44e-10!333;UBERON:0002619!2.65e-08!17;UBERON:0000922!5.91e-08!328;UBERON:0000025!1.18e-07!114;UBERON:0004111!3.52e-07!122;UBERON:0000475!8.46e-07!200 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,4.51e-24,54;UBERON:0001049,2.40e-22,52;UBERON:0005068,2.40e-22,52;UBERON:0006241,2.40e-22,52;UBERON:0007135,2.40e-22,52;UBERON:0002346,9.35e-21,64;UBERON:0003075,9.35e-21,64;UBERON:0007284,9.35e-21,64;UBERON:0001017,1.90e-20,73;UBERON:0002020,3.80e-20,34;UBERON:0001016,3.78e-19,75;UBERON:0000955,8.45e-19,47;UBERON:0006238,8.45e-19,47;UBERON:0003056,1.11e-18,49;UBERON:0010371,1.48e-18,73;UBERON:0003080,3.94e-18,40;UBERON:0002616,4.38e-18,46;UBERON:0002780,1.40e-17,39;UBERON:0001890,1.40e-17,39;UBERON:0006240,1.40e-17,39;UBERON:0004121,7.38e-17,95;UBERON:0000924,7.38e-17,95;UBERON:0006601,7.38e-17,95;UBERON:0003528,3.89e-16,29;UBERON:0002791,3.89e-16,29;UBERON:0001893,3.89e-16,29;UBERON:0010314,6.91e-14,92;UBERON:0000956,2.93e-11,21;UBERON:0001869,2.93e-11,21;UBERON:0000203,2.93e-11,21;UBERON:0002619,6.26e-09,17;UBERON:0000025,1.77e-08,114;UBERON:0004111,8.29e-08,122;UBERON:0002021,2.32e-07,10;UBERON:0000411,2.32e-07,10;UBERON:0001950,2.32e-07,10 | |||
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| |||
|short_description=p3@Lrrc16a | |||
}} |
Revision as of 00:12, 13 September 2013
Short description: | p3@Lrrc16a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Lrrc16a_5end |
Coexpression cluster: | MCL_coexpression_mm9:2832 |
Association with transcript: | -429bp_to_ENSMUST00000072889_5end |
EntrezGene: | Lrrc16a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.21e-17 | 23 |
neuroblast (sensu Vertebrata) | 5.21e-17 | 23 |
neuron | 1.04e-10 | 33 |
neuronal stem cell | 1.04e-10 | 33 |
neuroblast | 1.04e-10 | 33 |
electrically signaling cell | 1.04e-10 | 33 |
electrically responsive cell | 7.81e-08 | 39 |
electrically active cell | 7.81e-08 | 39 |
ectodermal cell | 6.25e-07 | 44 |
neurectodermal cell | 6.25e-07 | 44 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.