FFCP PHASE1:Mm9::chr8:3754546..3754555,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=896|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr8:3754546..3754555,-|id=chr8:3754546..3754555,-|ontology_enrichment_celltype=CL:0000055!8.80e-14!50;CL:0002319!6.79e-13!43;CL:0000548!2.28e-12!115;CL:0000004!2.28e-12!115;CL:0000255!2.28e-12!115;CL:0000221!6.88e-12!44;CL:0000133!6.88e-12!44;CL:0000393!4.78e-11!39;CL:0000211!4.78e-11!39;CL:0002371!1.18e-10!118;CL:0002321!1.60e-10!70;CL:0000220!1.60e-10!70;CL:0000540!1.80e-10!33;CL:0000047!1.80e-10!33;CL:0000031!1.80e-10!33;CL:0000404!1.80e-10!33;CL:0000723!3.89e-10!91;CL:0000048!3.89e-10!91;CL:0000034!2.08e-09!97;CL:0000144!4.09e-09!121;CL:0000012!4.09e-09!121;CL:0000117!1.26e-08!23;CL:0000337!1.26e-08!23|ontology_enrichment_celltype_v019_2=CL:0002321,3.76e-17,70;CL:0002319,9.47e-17,43;CL:0000221,5.22e-16,44;CL:0000133,5.22e-16,44;CL:0000034,1.53e-15,97;CL:0000723,2.08e-15,91;CL:0000048,2.08e-15,91;CL:0000393,6.37e-13,39;CL:0000211,6.37e-13,39;CL:0000540,1.16e-12,33;CL:0000047,1.16e-12,33;CL:0000031,1.16e-12,33;CL:0000404,1.16e-12,33;CL:0000117,5.27e-10,23;CL:0000337,5.27e-10,23;CL:0000219,2.86e-08,54;CL:0002453,3.41e-07,8|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.86e-15!73;UBERON:0005743!2.86e-15!73;UBERON:0000073!9.66e-14!75;UBERON:0001016!9.66e-14!75;UBERON:0002020!3.80e-10!34;UBERON:0004121!9.34e-09!102;UBERON:0000924!9.34e-09!102;UBERON:0006601!9.34e-09!102;UBERON:0001049!1.42e-08!52;UBERON:0005068!1.42e-08!52;UBERON:0006241!1.42e-08!52;UBERON:0007135!1.42e-08!52;UBERON:0002791!1.85e-08!29;UBERON:0003528!1.85e-08!29;UBERON:0001893!1.85e-08!29;UBERON:0000955!2.09e-08!50;UBERON:0006238!2.09e-08!50;UBERON:0002616!3.25e-08!49;UBERON:0000956!1.31e-07!21;UBERON:0001869!1.31e-07!21;UBERON:0000203!1.31e-07!21;UBERON:0002346!3.26e-07!71;UBERON:0003075!3.26e-07!71;UBERON:0007284!3.26e-07!71|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.74e-17,73;UBERON:0001016,4.04e-16,75;UBERON:0002020,2.41e-12,34;UBERON:0004121,4.38e-11,95;UBERON:0000924,4.38e-11,95;UBERON:0006601,4.38e-11,95;UBERON:0000073,1.84e-10,54;UBERON:0003528,3.31e-10,29;UBERON:0002791,3.31e-10,29;UBERON:0001893,3.31e-10,29;UBERON:0000956,2.96e-09,21;UBERON:0001869,2.96e-09,21;UBERON:0000203,2.96e-09,21;UBERON:0001049,8.63e-09,52;UBERON:0005068,8.63e-09,52;UBERON:0006241,8.63e-09,52;UBERON:0007135,8.63e-09,52;UBERON:0002346,3.90e-08,64;UBERON:0003075,3.90e-08,64;UBERON:0007284,3.90e-08,64;UBERON:0002619,4.57e-08,17;UBERON:0000955,1.37e-07,47;UBERON:0006238,1.37e-07,47;UBERON:0002616,2.30e-07,46;UBERON:0003080,3.29e-07,40;UBERON:0002780,4.23e-07,39;UBERON:0001890,4.23e-07,39;UBERON:0006240,4.23e-07,39|phase1_expression=0.320297694209588,0.348975407639361,0,2.41971369045464,2.00358291978539,0,1.86890112476421,0.129123323441576,0.985521055061667,3.5109678948299,0.856089841127525,0.398860794976682,0.513602189793617,0.611942816932982,3.33109761815663,0.202475267389826,3.49780939064073,0.630924330716475,0.822686601634433,0.84877930359606,0.510259740906419,0.297872853602656,1.04479915655574,0.639969691173627,1.37645568640302,1.14846392823004,0,0,0.950117097281869,0,0,23.4961349180064,2.46025915033828,15.8481681015439,0,0.166234645358492,0.204169356262369,0,0,0,0,0,0,1.25896817975577,0.506884656097573,0.917733760808408,6.25913075478431,3.70642765846759,3.07560655828261,5.05517737593137,4.75953833526233,12.9377307928474,1.00669563634642,3.62681071005672,1.00828139742739,1.80081605225163,4.01146815914259,3.6097046459421,2.42779753031517,1.5869729378161,4.43681982454325,6.77689064138264,7.11435836888911,3.5995988691256,6.92206453796882,7.104801149461,4.79360176829448,4.61061966385865,1.76272340924412,3.10513658162888,1.89292465216244,3.14216082844184,2.87129103237098,2.81728838194394,1.43768206527355,8.27296907949019,6.60695285996332,2.80912143787413,1.53606533256243,1.97829431595291,0.914876436024097,5.2091337055676,3.07101298901519,2.8138130501584,1.83357897332172,2.35702868378934,2.13557521198654,1.86399445825301,0.151452386666368,0.0755715601067855,0.289864488701678,1.72084775396277,8.83962733820076,7.01614149129162,7.79731700937203,4.92829575807069,0.983110940922263,1.36344258062446,3.89679006904303,3.18005617059306,0,2.56652954828636,0,0,2.38140145112336,2.02687892380079,4.54972000513305,1.1418387971906,0.776813650941515,0.742210695324124,0.520455980298408,1.52232739156071,0.922461989024234,0.60289056221049,0.823120949949934,0.502666365318702,0.247194967734374,0.578397427679647,3.5384422077995,0.323533699894818,0.883366073841574,0.484875253135222,3.72783522436244,2.04946557908083,0.628340120440365,0.255457055208591,0,0.599902730993408,0,1.19832511523858,1.37250180845588,0.251308704225729,1.39059456153821,0,1.24672826735736,0.973447578406546,0.916554274652847,0.622034853050465,1.76905930903572,4.62972082950243,1.17108398666433,0.919608417733892,0.540186389416048,0.452114453507145,0.408218994907967,0.512454881139399,0.562210347358373,0.517406741478031,0.431135985865684,0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| ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=896 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr8:3754546..3754555,- | |||
|id=chr8:3754546..3754555,- | |||
|ontology_enrichment_celltype=CL:0000055!8.80e-14!50;CL:0002319!6.79e-13!43;CL:0000548!2.28e-12!115;CL:0000004!2.28e-12!115;CL:0000255!2.28e-12!115;CL:0000221!6.88e-12!44;CL:0000133!6.88e-12!44;CL:0000393!4.78e-11!39;CL:0000211!4.78e-11!39;CL:0002371!1.18e-10!118;CL:0002321!1.60e-10!70;CL:0000220!1.60e-10!70;CL:0000540!1.80e-10!33;CL:0000047!1.80e-10!33;CL:0000031!1.80e-10!33;CL:0000404!1.80e-10!33;CL:0000723!3.89e-10!91;CL:0000048!3.89e-10!91;CL:0000034!2.08e-09!97;CL:0000144!4.09e-09!121;CL:0000012!4.09e-09!121;CL:0000117!1.26e-08!23;CL:0000337!1.26e-08!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,3.76e-17,70;CL:0002319,9.47e-17,43;CL:0000221,5.22e-16,44;CL:0000133,5.22e-16,44;CL:0000034,1.53e-15,97;CL:0000723,2.08e-15,91;CL:0000048,2.08e-15,91;CL:0000393,6.37e-13,39;CL:0000211,6.37e-13,39;CL:0000540,1.16e-12,33;CL:0000047,1.16e-12,33;CL:0000031,1.16e-12,33;CL:0000404,1.16e-12,33;CL:0000117,5.27e-10,23;CL:0000337,5.27e-10,23;CL:0000219,2.86e-08,54;CL:0002453,3.41e-07,8 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.86e-15!73;UBERON:0005743!2.86e-15!73;UBERON:0000073!9.66e-14!75;UBERON:0001016!9.66e-14!75;UBERON:0002020!3.80e-10!34;UBERON:0004121!9.34e-09!102;UBERON:0000924!9.34e-09!102;UBERON:0006601!9.34e-09!102;UBERON:0001049!1.42e-08!52;UBERON:0005068!1.42e-08!52;UBERON:0006241!1.42e-08!52;UBERON:0007135!1.42e-08!52;UBERON:0002791!1.85e-08!29;UBERON:0003528!1.85e-08!29;UBERON:0001893!1.85e-08!29;UBERON:0000955!2.09e-08!50;UBERON:0006238!2.09e-08!50;UBERON:0002616!3.25e-08!49;UBERON:0000956!1.31e-07!21;UBERON:0001869!1.31e-07!21;UBERON:0000203!1.31e-07!21;UBERON:0002346!3.26e-07!71;UBERON:0003075!3.26e-07!71;UBERON:0007284!3.26e-07!71 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.74e-17,73;UBERON:0001016,4.04e-16,75;UBERON:0002020,2.41e-12,34;UBERON:0004121,4.38e-11,95;UBERON:0000924,4.38e-11,95;UBERON:0006601,4.38e-11,95;UBERON:0000073,1.84e-10,54;UBERON:0003528,3.31e-10,29;UBERON:0002791,3.31e-10,29;UBERON:0001893,3.31e-10,29;UBERON:0000956,2.96e-09,21;UBERON:0001869,2.96e-09,21;UBERON:0000203,2.96e-09,21;UBERON:0001049,8.63e-09,52;UBERON:0005068,8.63e-09,52;UBERON:0006241,8.63e-09,52;UBERON:0007135,8.63e-09,52;UBERON:0002346,3.90e-08,64;UBERON:0003075,3.90e-08,64;UBERON:0007284,3.90e-08,64;UBERON:0002619,4.57e-08,17;UBERON:0000955,1.37e-07,47;UBERON:0006238,1.37e-07,47;UBERON:0002616,2.30e-07,46;UBERON:0003080,3.29e-07,40;UBERON:0002780,4.23e-07,39;UBERON:0001890,4.23e-07,39;UBERON:0006240,4.23e-07,39 | |||
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| |||
|short_description=p@chr8:3754546..3754555,- | |||
}} |
Revision as of 15:35, 14 September 2013
Short description: | p@chr8:3754546..3754555, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr8:3754546..3754555, - |
Coexpression cluster: | MCL_coexpression_mm9:896 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 3.76e-17 | 70 |
neural cell | 9.47e-17 | 43 |
ectodermal cell | 5.22e-16 | 44 |
neurectodermal cell | 5.22e-16 | 44 |
stem cell | 1.53e-15 | 97 |
somatic stem cell | 2.08e-15 | 91 |
multi fate stem cell | 2.08e-15 | 91 |
electrically responsive cell | 6.37e-13 | 39 |
electrically active cell | 6.37e-13 | 39 |
neuron | 1.16e-12 | 33 |
neuronal stem cell | 1.16e-12 | 33 |
neuroblast | 1.16e-12 | 33 |
electrically signaling cell | 1.16e-12 | 33 |
CNS neuron (sensu Vertebrata) | 5.27e-10 | 23 |
neuroblast (sensu Vertebrata) | 5.27e-10 | 23 |
motile cell | 2.86e-08 | 54 |
oligodendrocyte precursor cell | 3.41e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.74e-17 | 73 |
nervous system | 4.04e-16 | 75 |
gray matter | 2.41e-12 | 34 |
ectoderm-derived structure | 4.38e-11 | 95 |
ectoderm | 4.38e-11 | 95 |
presumptive ectoderm | 4.38e-11 | 95 |
regional part of nervous system | 1.84e-10 | 54 |
brain grey matter | 3.31e-10 | 29 |
regional part of telencephalon | 3.31e-10 | 29 |
telencephalon | 3.31e-10 | 29 |
cerebral cortex | 2.96e-09 | 21 |
cerebral hemisphere | 2.96e-09 | 21 |
pallium | 2.96e-09 | 21 |
neural tube | 8.63e-09 | 52 |
neural rod | 8.63e-09 | 52 |
future spinal cord | 8.63e-09 | 52 |
neural keel | 8.63e-09 | 52 |
neurectoderm | 3.90e-08 | 64 |
neural plate | 3.90e-08 | 64 |
presumptive neural plate | 3.90e-08 | 64 |
regional part of cerebral cortex | 4.57e-08 | 17 |
brain | 1.37e-07 | 47 |
future brain | 1.37e-07 | 47 |
regional part of brain | 2.30e-07 | 46 |
anterior neural tube | 3.29e-07 | 40 |
regional part of forebrain | 4.23e-07 | 39 |
forebrain | 4.23e-07 | 39 |
future forebrain | 4.23e-07 | 39 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.