FFCP PHASE1:Mm9::chr6:83087844..83087860,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=1663|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr6:83087844..83087860,+|id=chr6:83087844..83087860,+|ontology_enrichment_celltype=CL:0000221!1.19e-11!44;CL:0000133!1.19e-11!44;CL:0002319!5.26e-11!43;CL:0000055!7.17e-10!50;CL:0000540!1.53e-09!33;CL:0000047!1.53e-09!33;CL:0000031!1.53e-09!33;CL:0000404!1.53e-09!33;CL:0000393!7.07e-09!39;CL:0000211!7.07e-09!39;CL:0000107!4.85e-07!9|ontology_enrichment_celltype_v019_2=CL:0000221,1.36e-16,44;CL:0000133,1.36e-16,44;CL:0002319,1.76e-15,43;CL:0000540,1.14e-13,33;CL:0000047,1.14e-13,33;CL:0000031,1.14e-13,33;CL:0000404,1.14e-13,33;CL:0000107,7.65e-12,9;CL:0000393,1.24e-11,39;CL:0000211,1.24e-11,39;CL:0002321,8.24e-09,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.85e-20!75;UBERON:0001016!1.85e-20!75;UBERON:0004121!2.60e-20!102;UBERON:0000924!2.60e-20!102;UBERON:0006601!2.60e-20!102;UBERON:0001017!5.46e-19!73;UBERON:0005743!5.46e-19!73;UBERON:0002346!1.37e-13!71;UBERON:0003075!1.37e-13!71;UBERON:0007284!1.37e-13!71;UBERON:0000033!3.08e-13!63;UBERON:0001049!9.49e-12!52;UBERON:0005068!9.49e-12!52;UBERON:0006241!9.49e-12!52;UBERON:0007135!9.49e-12!52;UBERON:0000955!1.32e-10!50;UBERON:0006238!1.32e-10!50;UBERON:0002616!2.64e-10!49;UBERON:0000010!1.51e-08!11;UBERON:0000153!5.59e-08!94;UBERON:0003056!6.77e-08!49;UBERON:0003076!3.61e-07!12;UBERON:0003057!3.61e-07!12;UBERON:0002410!4.85e-07!9|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.04e-25,75;UBERON:0001017,2.47e-23,73;UBERON:0004121,1.41e-20,95;UBERON:0000924,1.41e-20,95;UBERON:0006601,1.41e-20,95;UBERON:0000010,1.17e-14,11;UBERON:0000073,6.82e-14,54;UBERON:0002346,5.52e-13,64;UBERON:0003075,5.52e-13,64;UBERON:0007284,5.52e-13,64;UBERON:0010371,2.70e-12,73;UBERON:0001049,3.55e-12,52;UBERON:0005068,3.55e-12,52;UBERON:0006241,3.55e-12,52;UBERON:0007135,3.55e-12,52;UBERON:0002410,7.65e-12,9;UBERON:0002020,2.02e-08,34;UBERON:0010314,2.10e-08,92;UBERON:0002102,3.43e-08,7;UBERON:0004710,3.43e-08,7;UBERON:0005419,3.43e-08,7;UBERON:0005417,3.43e-08,7;UBERON:0005729,3.43e-08,7;UBERON:0003076,3.74e-08,12;UBERON:0003057,3.74e-08,12;UBERON:0002240,5.19e-08,6;UBERON:0005174,5.19e-08,6;UBERON:0001137,5.19e-08,6;UBERON:0002616,1.03e-07,46;UBERON:0000955,2.00e-07,47;UBERON:0006238,2.00e-07,47;UBERON:0010708,5.38e-07,8|phase1_expression=3.20297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10556277196391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.503587271902309,0.405507724878058,0,0.782391344348039,0.436050312760893,1.31811709640683,0.194429899074283,0,0,0,0,0,1.28629718017973,0,0.515672092277442,0.202316460859598,0,0.633831403506179,1.35537812827653,0,0,0,0,2.39680088414724,3.84218305321555,0.103689612308478,0,0,6.85562362569129,4.63823935998388,0.367472397644862,0.191690942036473,0.919218786610021,7.70811166995721,7.91661496128164,6.75868746327471,0.263772575460388,0,0.52091337055676,6.70039197603314,3.93933827022176,8.25110537994775,3.53554302568401,4.27115042397309,1.3047961207771,23.020762773288,15.1898835814639,0,0,0,0,1.29955283489534,0,0.421333260395256,0,0,0,12.3942209403479,0,0,0,0,0,0,0.11418387971906,0,0,0.173485326766136,0.608930956624282,0.230615497256059,0.301445281105245,0.352766121407114,0,0,0.144599356919912,0,1.29413479957927,0.220841518460394,0,0,0.878342391034642,3.14170060220183,0,0,0,0,9.43681028250383,10.980014467647,0,3.30266208365325,2.55715457330331,8.10373373782284,7.94982189032012,0.305518091550949,0,0,0.631325567659422,0.780722657776222,0.459804208866946,0.360124259610698,0.60281927134286,0.272145996605311,1.0249097622788,0.281105173679186,1.03481348295606,3.44908788692548,1.89106080167819,3.16712023495108,3.5071317188412,3.61461423993277,2.089512999133,1.4404749548556,0.199034266818493,0,0,0,0.414251545071004,0.469052119962192,0.720248245844059,0,0.393528463494808,0.154267112887378,0.697601834251224,0.536546802799238,0.350296027101508,0,0.32833492815819,0.405344047729279,0.146199987425332,0,0,3.57492912559016,0,0,0,1.2797295032114,1.16118335930219,0.515469845288373,0.403367049246685,0.22237804384487,0,0.474529061544512,0,0,0,0,0,0.216138049874694,0,0.379335801906163,0.228497025219458,0,0,0,0.0701358198903186,0.189709611372772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,1.51593129416388,0.651859905768103,0.509235257325564,0.704070744865506,0.167506257441816,0.714130922658041,0,0.315270288212382,0,0.159454768657487,0.491589944147214,0.172684981865896,0,0,0,0,0.551873492609465,12.0412942490844,12.3072270921813,0.163934945376675,0.252470927204373,4.41711507182759,2.73307121007647,6.24727853425117,9.55875191810208,12.0311284004493,10.190755108398,4.85772842009873,3.21481443702443,3.55759000151871,0.963963949265421,0,0.178065603667255,0.162886959353576,0,0,1.21390318077491,1.209294227859,0.188605079755898,0.295301892880773,0.307435147943927,0.258428293168221,0,0,0,1.05418608574999,0,0.340439605753788,1.26042765821917,0.646793418913773,0.214337035031592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| ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=1663 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr6:83087844..83087860,+ | |||
|id=chr6:83087844..83087860,+ | |||
|ontology_enrichment_celltype=CL:0000221!1.19e-11!44;CL:0000133!1.19e-11!44;CL:0002319!5.26e-11!43;CL:0000055!7.17e-10!50;CL:0000540!1.53e-09!33;CL:0000047!1.53e-09!33;CL:0000031!1.53e-09!33;CL:0000404!1.53e-09!33;CL:0000393!7.07e-09!39;CL:0000211!7.07e-09!39;CL:0000107!4.85e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.36e-16,44;CL:0000133,1.36e-16,44;CL:0002319,1.76e-15,43;CL:0000540,1.14e-13,33;CL:0000047,1.14e-13,33;CL:0000031,1.14e-13,33;CL:0000404,1.14e-13,33;CL:0000107,7.65e-12,9;CL:0000393,1.24e-11,39;CL:0000211,1.24e-11,39;CL:0002321,8.24e-09,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.85e-20!75;UBERON:0001016!1.85e-20!75;UBERON:0004121!2.60e-20!102;UBERON:0000924!2.60e-20!102;UBERON:0006601!2.60e-20!102;UBERON:0001017!5.46e-19!73;UBERON:0005743!5.46e-19!73;UBERON:0002346!1.37e-13!71;UBERON:0003075!1.37e-13!71;UBERON:0007284!1.37e-13!71;UBERON:0000033!3.08e-13!63;UBERON:0001049!9.49e-12!52;UBERON:0005068!9.49e-12!52;UBERON:0006241!9.49e-12!52;UBERON:0007135!9.49e-12!52;UBERON:0000955!1.32e-10!50;UBERON:0006238!1.32e-10!50;UBERON:0002616!2.64e-10!49;UBERON:0000010!1.51e-08!11;UBERON:0000153!5.59e-08!94;UBERON:0003056!6.77e-08!49;UBERON:0003076!3.61e-07!12;UBERON:0003057!3.61e-07!12;UBERON:0002410!4.85e-07!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.04e-25,75;UBERON:0001017,2.47e-23,73;UBERON:0004121,1.41e-20,95;UBERON:0000924,1.41e-20,95;UBERON:0006601,1.41e-20,95;UBERON:0000010,1.17e-14,11;UBERON:0000073,6.82e-14,54;UBERON:0002346,5.52e-13,64;UBERON:0003075,5.52e-13,64;UBERON:0007284,5.52e-13,64;UBERON:0010371,2.70e-12,73;UBERON:0001049,3.55e-12,52;UBERON:0005068,3.55e-12,52;UBERON:0006241,3.55e-12,52;UBERON:0007135,3.55e-12,52;UBERON:0002410,7.65e-12,9;UBERON:0002020,2.02e-08,34;UBERON:0010314,2.10e-08,92;UBERON:0002102,3.43e-08,7;UBERON:0004710,3.43e-08,7;UBERON:0005419,3.43e-08,7;UBERON:0005417,3.43e-08,7;UBERON:0005729,3.43e-08,7;UBERON:0003076,3.74e-08,12;UBERON:0003057,3.74e-08,12;UBERON:0002240,5.19e-08,6;UBERON:0005174,5.19e-08,6;UBERON:0001137,5.19e-08,6;UBERON:0002616,1.03e-07,46;UBERON:0000955,2.00e-07,47;UBERON:0006238,2.00e-07,47;UBERON:0010708,5.38e-07,8 | |||
|phase1_expression=3.20297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10556277196391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.503587271902309,0.405507724878058,0,0.782391344348039,0.436050312760893,1.31811709640683,0.194429899074283,0,0,0,0,0,1.28629718017973,0,0.515672092277442,0.202316460859598,0,0.633831403506179,1.35537812827653,0,0,0,0,2.39680088414724,3.84218305321555,0.103689612308478,0,0,6.85562362569129,4.63823935998388,0.367472397644862,0.191690942036473,0.919218786610021,7.70811166995721,7.91661496128164,6.75868746327471,0.263772575460388,0,0.52091337055676,6.70039197603314,3.93933827022176,8.25110537994775,3.53554302568401,4.27115042397309,1.3047961207771,23.020762773288,15.1898835814639,0,0,0,0,1.29955283489534,0,0.421333260395256,0,0,0,12.3942209403479,0,0,0,0,0,0,0.11418387971906,0,0,0.173485326766136,0.608930956624282,0.230615497256059,0.301445281105245,0.352766121407114,0,0,0.144599356919912,0,1.29413479957927,0.220841518460394,0,0,0.878342391034642,3.14170060220183,0,0,0,0,9.43681028250383,10.980014467647,0,3.30266208365325,2.55715457330331,8.10373373782284,7.94982189032012,0.305518091550949,0,0,0.631325567659422,0.780722657776222,0.459804208866946,0.360124259610698,0.60281927134286,0.272145996605311,1.0249097622788,0.281105173679186,1.03481348295606,3.44908788692548,1.89106080167819,3.16712023495108,3.5071317188412,3.61461423993277,2.089512999133,1.4404749548556,0.199034266818493,0,0,0,0.414251545071004,0.469052119962192,0.720248245844059,0,0.393528463494808,0.154267112887378,0.697601834251224,0.536546802799238,0.350296027101508,0,0.32833492815819,0.405344047729279,0.146199987425332,0,0,3.57492912559016,0,0,0,1.2797295032114,1.16118335930219,0.515469845288373,0.403367049246685,0.22237804384487,0,0.474529061544512,0,0,0,0,0,0.216138049874694,0,0.379335801906163,0.228497025219458,0,0,0,0.0701358198903186,0.189709611372772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,1.51593129416388,0.651859905768103,0.509235257325564,0.704070744865506,0.167506257441816,0.714130922658041,0,0.315270288212382,0,0.159454768657487,0.491589944147214,0.172684981865896,0,0,0,0,0.551873492609465,12.0412942490844,12.3072270921813,0.163934945376675,0.252470927204373,4.41711507182759,2.73307121007647,6.24727853425117,9.55875191810208,12.0311284004493,10.190755108398,4.85772842009873,3.21481443702443,3.55759000151871,0.963963949265421,0,0.178065603667255,0.162886959353576,0,0,1.21390318077491,1.209294227859,0.188605079755898,0.295301892880773,0.307435147943927,0.258428293168221,0,0,0,1.05418608574999,0,0.340439605753788,1.26042765821917,0.646793418913773,0.214337035031592,0.177340233642274,0.356737635204141,0.987294123612726,1.8267896946876,0,0,0.220528398054962,0.16488625294148,0.322928853391811,0.241251699712623,0.238744688006273,0.164140899745061,0,11.1255181206306,0,0.206386867963223,0,0.188368457004691,0,0.228778173206523,0,0,0,0,1.26534397432454,0.406638934253697,0.216010681643603,0.418176592028937,0.218362563746178,0.539457385539283,0.165306911450672,0,0.129614973291793,0.621339313086926,0,0.448549638131936,0.330916980914195,0,0.258319646955462,0.506868376472335,0.234714477291508,0,0,0.483168241652012,0,0,0.608175645870493,0.308132871494482,0,0,0.198681354781265,0,0.147689527174577,0,0.15241361331,0.100826185136841,0,0,0,0.226730383615211,0,0,0,0,0.375364950902364,0.183151624267265,0,0,1.12950368523413,1.38097570952153,1.14579102687879,1.3748254587495,1.37016503954128,0,1.35004500046361,1.35096360967266,0.906284817968409,0.51776031175182,1.3492355185943,0.798049746802062,1.19513524027894,1.94485373654635,0.419226325255965,0.551530525350042,0.44449345560323,0.618105171716683,0.64183841918363,0.758091635291392,1.2673964994512,1.13175804831646,0.561849044819294,0.256100609619477,0.229741875822453,0.476293691283074,0.927074607558844,1.35036454324594,0.824171801606613,0.883193520806384,0.342869252385415,0.887379030796687,0,0.726732083161643,0.564656282491984,0.930760686808441,1.28049581010941,0.263069711437843,0.950628796921032,0.561142271657738,0.593175090620871,0.591026894253381,0.409231043169689,0.464810523557898,0.771626443924566,0.999242311751784,0.467863216890817,0.214871054048298,0,1.54413993383661,1.62307484934295 | |||
|short_description=p@chr6:83087844..83087860,+ | |||
}} |
Revision as of 10:43, 14 September 2013
Short description: | p@chr6:83087844..83087860, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr6:83087844..83087860, + |
Coexpression cluster: | MCL_coexpression_mm9:1663 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.36e-16 | 44 |
neurectodermal cell | 1.36e-16 | 44 |
neural cell | 1.76e-15 | 43 |
neuron | 1.14e-13 | 33 |
neuronal stem cell | 1.14e-13 | 33 |
neuroblast | 1.14e-13 | 33 |
electrically signaling cell | 1.14e-13 | 33 |
autonomic neuron | 7.65e-12 | 9 |
electrically responsive cell | 1.24e-11 | 39 |
electrically active cell | 1.24e-11 | 39 |
embryonic cell | 8.24e-09 | 70 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.04e-25 | 75 |
central nervous system | 2.47e-23 | 73 |
ectoderm-derived structure | 1.41e-20 | 95 |
ectoderm | 1.41e-20 | 95 |
presumptive ectoderm | 1.41e-20 | 95 |
peripheral nervous system | 1.17e-14 | 11 |
regional part of nervous system | 6.82e-14 | 54 |
neurectoderm | 5.52e-13 | 64 |
neural plate | 5.52e-13 | 64 |
presumptive neural plate | 5.52e-13 | 64 |
ecto-epithelium | 2.70e-12 | 73 |
neural tube | 3.55e-12 | 52 |
neural rod | 3.55e-12 | 52 |
future spinal cord | 3.55e-12 | 52 |
neural keel | 3.55e-12 | 52 |
autonomic nervous system | 7.65e-12 | 9 |
gray matter | 2.02e-08 | 34 |
structure with developmental contribution from neural crest | 2.10e-08 | 92 |
forelimb | 3.43e-08 | 7 |
pectoral appendage | 3.43e-08 | 7 |
pectoral appendage bud | 3.43e-08 | 7 |
forelimb bud | 3.43e-08 | 7 |
forelimb/pectoral fin field | 3.43e-08 | 7 |
posterior neural tube | 3.74e-08 | 12 |
chordal neural plate | 3.74e-08 | 12 |
spinal cord | 5.19e-08 | 6 |
dorsal region element | 5.19e-08 | 6 |
dorsum | 5.19e-08 | 6 |
regional part of brain | 1.03e-07 | 46 |
brain | 2.00e-07 | 47 |
future brain | 2.00e-07 | 47 |
pectoral complex | 5.38e-07 | 8 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.