FFCP PHASE1:Mm9::chr3:34552508..34552515,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=1027|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr3:34552508..34552515,+|id=chr3:34552508..34552515,+|ontology_enrichment_celltype=CL:0000221!2.72e-21!44;CL:0000133!2.72e-21!44;CL:0002319!8.51e-21!43;CL:0000540!4.34e-20!33;CL:0000047!4.34e-20!33;CL:0000031!4.34e-20!33;CL:0000404!4.34e-20!33;CL:0000055!1.46e-15!50;CL:0000393!7.78e-15!39;CL:0000211!7.78e-15!39;CL:0000117!2.15e-14!23;CL:0000337!2.15e-14!23;CL:0002321!9.62e-10!70;CL:0000220!9.62e-10!70|ontology_enrichment_celltype_v019_2=CL:0002319,2.13e-20,43;CL:0000221,9.06e-20,44;CL:0000133,9.06e-20,44;CL:0000540,1.26e-19,33;CL:0000047,1.26e-19,33;CL:0000031,1.26e-19,33;CL:0000404,1.26e-19,33;CL:0000393,1.14e-15,39;CL:0000211,1.14e-15,39;CL:0000117,1.53e-13,23;CL:0000337,1.53e-13,23;CL:0002321,6.34e-11,70;CL:0002609,7.20e-10,6;CL:0000107,4.32e-08,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.49e-30!75;UBERON:0001016!1.49e-30!75;UBERON:0001017!8.35e-29!73;UBERON:0005743!8.35e-29!73;UBERON:0004121!3.63e-27!102;UBERON:0000924!3.63e-27!102;UBERON:0006601!3.63e-27!102;UBERON:0002346!8.43e-23!71;UBERON:0003075!8.43e-23!71;UBERON:0007284!8.43e-23!71;UBERON:0000033!1.94e-22!63;UBERON:0001049!1.79e-19!52;UBERON:0005068!1.79e-19!52;UBERON:0006241!1.79e-19!52;UBERON:0007135!1.79e-19!52;UBERON:0003056!1.22e-18!49;UBERON:0000955!4.51e-18!50;UBERON:0006238!4.51e-18!50;UBERON:0002616!2.90e-17!49;UBERON:0003080!7.37e-14!40;UBERON:0002780!2.26e-13!39;UBERON:0001890!2.26e-13!39;UBERON:0006240!2.26e-13!39;UBERON:0002020!1.26e-11!34;UBERON:0007811!1.75e-11!86;UBERON:0000153!2.13e-09!94;UBERON:0002791!5.05e-09!29;UBERON:0003528!5.05e-09!29;UBERON:0001893!5.05e-09!29;UBERON:0000010!3.36e-08!11|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.87e-29,75;UBERON:0004121,1.69e-28,95;UBERON:0000924,1.69e-28,95;UBERON:0006601,1.69e-28,95;UBERON:0002346,3.60e-28,64;UBERON:0003075,3.60e-28,64;UBERON:0007284,3.60e-28,64;UBERON:0001017,2.71e-26,73;UBERON:0010371,1.81e-23,73;UBERON:0001049,4.25e-20,52;UBERON:0005068,4.25e-20,52;UBERON:0006241,4.25e-20,52;UBERON:0007135,4.25e-20,52;UBERON:0000073,5.31e-19,54;UBERON:0003056,1.23e-18,49;UBERON:0000955,7.51e-18,47;UBERON:0006238,7.51e-18,47;UBERON:0010314,1.37e-16,92;UBERON:0002616,1.43e-16,46;UBERON:0002020,1.62e-16,34;UBERON:0002780,3.16e-15,39;UBERON:0001890,3.16e-15,39;UBERON:0006240,3.16e-15,39;UBERON:0003080,1.07e-14,40;UBERON:0003528,2.05e-14,29;UBERON:0002791,2.05e-14,29;UBERON:0001893,2.05e-14,29;UBERON:0000010,5.59e-11,11;UBERON:0011216,1.75e-08,194;UBERON:0000956,1.80e-08,21;UBERON:0001869,1.80e-08,21;UBERON:0000203,1.80e-08,21;UBERON:0002410,4.32e-08,9;UBERON:0001954,5.50e-08,7;UBERON:0003022,5.50e-08,7;UBERON:0002421,5.50e-08,7;UBERON:0000349,5.50e-08,7;UBERON:0002600,5.50e-08,7;UBERON:0002420,9.33e-08,8;UBERON:0007245,9.33e-08,8;UBERON:0010009,9.33e-08,8;UBERON:0010011,9.33e-08,8;UBERON:0000454,9.33e-08,8|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137114433605739,0,1.02051948181284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436050312760893,1.09843091367236,0.194429899074283,0.419959264876088,0,0,0,0,0,0,0,0.202316460859598,0.528990979272033,0.633831403506179,0,0,0,0,0,0,1.92109152660777,1.8664130215526,1.35005938331691,1.26194976810829,0.856952953211411,1.54607978666129,1.5923803897944,3.35459148563827,2.75765635983006,2.20231761998777,0.638436690425939,0.46081959976873,0.791317726381163,2.19570344645783,3.64639359389732,1.67509799400829,2.25105044012672,1.5279824777681,2.06240009831567,1.42371680799103,0.559198337475902,1.74170244666323,3.55186332501892,0,0,0,0,0,0,0,0,0,0,0.845060518660083,0,0,0,0.649473123033642,2.02687892380079,0.505524445014783,0.11418387971906,0,0,0.173485326766136,0,0,0,0,0,0,0,0,0,0,0,0,0.292780797011547,1.46612694769419,0,0,0,0,0.898743836428936,0,2.51308704225729,0.695297280769106,1.02286182932132,1.66230435647648,2.43361894601636,0,0,0,0.210441855886474,1.30120442962704,0.689706313300419,0.180062129805349,1.65775299619287,3.94611695077702,6.91814089538189,7.40243624021858,0.517406741478031,0,0,0.175951124163949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164167464079095,0.0810688095458557,0,0,0,1.26173969138476,1.44066457330998,0,0,0.213288250535234,0,0.128867461322093,0,0,0,0,0,0,0,0.19496408711912,0,0,0,0,0.114248512609729,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0.25462585178142,0,0,0,0,0,0,0,0,0,0,0,0.162964976442026,0.169745085775188,0,0,0.476087281772027,0,0,0,0.318909537314974,0,0.172684981865896,0,0,0,0,0,2.0871576698413,2.46144541843627,0,0.252470927204373,3.15508219416257,1.56175497718655,1.72338718186239,1.19484398976276,1.78238939265915,0.849229592366497,0.404810701674894,1.75353514746787,1.18586333383957,2.89189184779626,0,0,0,0,0,0,0,0,0,0.614870295887855,0,0,0,0,0,0,0.680879211507576,0.18006109403131,0.388076051348264,1.50035924522115,0.354680467284547,0.891844088010353,0.987294123612726,1.2178597964584,0,0,0.220528398054962,0,0.161464426695906,0,0,0,0,2.78137953015765,0,0,0,0,0,0,0,0,0,1.90934123603023,0.158167996790568,0.609958401380546,1.08005340821801,1.67270636811575,1.09181281873089,1.75323650300267,0.661227645802687,0,0,0,0,0,0.165458490457098,0,0,0,0.117357238645754,0,0,0.724752362478018,0.288030006257865,0,0,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0.221985953374065,0.269141569828427,0,0,0,0,0,0.501572104035363,0,0,0.572895513439397,1.20297227640581,0,2.2661816921691,0,1.35096360967266,0,0,0,0.399024873401031,0.853668028770671,0.729320151204882,0,0,0.44449345560323,0.206035057238894,0,0.252697211763798,0,0,0,0.576226371643824,0.402048282689293,1.42888107384922,0.927074607558844,0.578727661391115,1.23625770240992,0.588795680537589,0.685738504770831,0.354951612318675,0.238436189947321,0.436039249896986,0.376437521661322,0.338458431566706,0.73171189149109,0.789209134313529,0.135804113845862,0,0.474540072496697,0.492522411877817,0.409231043169689,0.154936841185966,0.385813221962283,0.249810577937946,0.233931608445408,0.214871054048298,0.191288332068843,0,0|short_description=p@chr3:34552508..34552515,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=1027 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr3:34552508..34552515,+ | |||
|id=chr3:34552508..34552515,+ | |||
|ontology_enrichment_celltype=CL:0000221!2.72e-21!44;CL:0000133!2.72e-21!44;CL:0002319!8.51e-21!43;CL:0000540!4.34e-20!33;CL:0000047!4.34e-20!33;CL:0000031!4.34e-20!33;CL:0000404!4.34e-20!33;CL:0000055!1.46e-15!50;CL:0000393!7.78e-15!39;CL:0000211!7.78e-15!39;CL:0000117!2.15e-14!23;CL:0000337!2.15e-14!23;CL:0002321!9.62e-10!70;CL:0000220!9.62e-10!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,2.13e-20,43;CL:0000221,9.06e-20,44;CL:0000133,9.06e-20,44;CL:0000540,1.26e-19,33;CL:0000047,1.26e-19,33;CL:0000031,1.26e-19,33;CL:0000404,1.26e-19,33;CL:0000393,1.14e-15,39;CL:0000211,1.14e-15,39;CL:0000117,1.53e-13,23;CL:0000337,1.53e-13,23;CL:0002321,6.34e-11,70;CL:0002609,7.20e-10,6;CL:0000107,4.32e-08,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.49e-30!75;UBERON:0001016!1.49e-30!75;UBERON:0001017!8.35e-29!73;UBERON:0005743!8.35e-29!73;UBERON:0004121!3.63e-27!102;UBERON:0000924!3.63e-27!102;UBERON:0006601!3.63e-27!102;UBERON:0002346!8.43e-23!71;UBERON:0003075!8.43e-23!71;UBERON:0007284!8.43e-23!71;UBERON:0000033!1.94e-22!63;UBERON:0001049!1.79e-19!52;UBERON:0005068!1.79e-19!52;UBERON:0006241!1.79e-19!52;UBERON:0007135!1.79e-19!52;UBERON:0003056!1.22e-18!49;UBERON:0000955!4.51e-18!50;UBERON:0006238!4.51e-18!50;UBERON:0002616!2.90e-17!49;UBERON:0003080!7.37e-14!40;UBERON:0002780!2.26e-13!39;UBERON:0001890!2.26e-13!39;UBERON:0006240!2.26e-13!39;UBERON:0002020!1.26e-11!34;UBERON:0007811!1.75e-11!86;UBERON:0000153!2.13e-09!94;UBERON:0002791!5.05e-09!29;UBERON:0003528!5.05e-09!29;UBERON:0001893!5.05e-09!29;UBERON:0000010!3.36e-08!11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.87e-29,75;UBERON:0004121,1.69e-28,95;UBERON:0000924,1.69e-28,95;UBERON:0006601,1.69e-28,95;UBERON:0002346,3.60e-28,64;UBERON:0003075,3.60e-28,64;UBERON:0007284,3.60e-28,64;UBERON:0001017,2.71e-26,73;UBERON:0010371,1.81e-23,73;UBERON:0001049,4.25e-20,52;UBERON:0005068,4.25e-20,52;UBERON:0006241,4.25e-20,52;UBERON:0007135,4.25e-20,52;UBERON:0000073,5.31e-19,54;UBERON:0003056,1.23e-18,49;UBERON:0000955,7.51e-18,47;UBERON:0006238,7.51e-18,47;UBERON:0010314,1.37e-16,92;UBERON:0002616,1.43e-16,46;UBERON:0002020,1.62e-16,34;UBERON:0002780,3.16e-15,39;UBERON:0001890,3.16e-15,39;UBERON:0006240,3.16e-15,39;UBERON:0003080,1.07e-14,40;UBERON:0003528,2.05e-14,29;UBERON:0002791,2.05e-14,29;UBERON:0001893,2.05e-14,29;UBERON:0000010,5.59e-11,11;UBERON:0011216,1.75e-08,194;UBERON:0000956,1.80e-08,21;UBERON:0001869,1.80e-08,21;UBERON:0000203,1.80e-08,21;UBERON:0002410,4.32e-08,9;UBERON:0001954,5.50e-08,7;UBERON:0003022,5.50e-08,7;UBERON:0002421,5.50e-08,7;UBERON:0000349,5.50e-08,7;UBERON:0002600,5.50e-08,7;UBERON:0002420,9.33e-08,8;UBERON:0007245,9.33e-08,8;UBERON:0010009,9.33e-08,8;UBERON:0010011,9.33e-08,8;UBERON:0000454,9.33e-08,8 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137114433605739,0,1.02051948181284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436050312760893,1.09843091367236,0.194429899074283,0.419959264876088,0,0,0,0,0,0,0,0.202316460859598,0.528990979272033,0.633831403506179,0,0,0,0,0,0,1.92109152660777,1.8664130215526,1.35005938331691,1.26194976810829,0.856952953211411,1.54607978666129,1.5923803897944,3.35459148563827,2.75765635983006,2.20231761998777,0.638436690425939,0.46081959976873,0.791317726381163,2.19570344645783,3.64639359389732,1.67509799400829,2.25105044012672,1.5279824777681,2.06240009831567,1.42371680799103,0.559198337475902,1.74170244666323,3.55186332501892,0,0,0,0,0,0,0,0,0,0,0.845060518660083,0,0,0,0.649473123033642,2.02687892380079,0.505524445014783,0.11418387971906,0,0,0.173485326766136,0,0,0,0,0,0,0,0,0,0,0,0,0.292780797011547,1.46612694769419,0,0,0,0,0.898743836428936,0,2.51308704225729,0.695297280769106,1.02286182932132,1.66230435647648,2.43361894601636,0,0,0,0.210441855886474,1.30120442962704,0.689706313300419,0.180062129805349,1.65775299619287,3.94611695077702,6.91814089538189,7.40243624021858,0.517406741478031,0,0,0.175951124163949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164167464079095,0.0810688095458557,0,0,0,1.26173969138476,1.44066457330998,0,0,0.213288250535234,0,0.128867461322093,0,0,0,0,0,0,0,0.19496408711912,0,0,0,0,0.114248512609729,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0.25462585178142,0,0,0,0,0,0,0,0,0,0,0,0.162964976442026,0.169745085775188,0,0,0.476087281772027,0,0,0,0.318909537314974,0,0.172684981865896,0,0,0,0,0,2.0871576698413,2.46144541843627,0,0.252470927204373,3.15508219416257,1.56175497718655,1.72338718186239,1.19484398976276,1.78238939265915,0.849229592366497,0.404810701674894,1.75353514746787,1.18586333383957,2.89189184779626,0,0,0,0,0,0,0,0,0,0.614870295887855,0,0,0,0,0,0,0.680879211507576,0.18006109403131,0.388076051348264,1.50035924522115,0.354680467284547,0.891844088010353,0.987294123612726,1.2178597964584,0,0,0.220528398054962,0,0.161464426695906,0,0,0,0,2.78137953015765,0,0,0,0,0,0,0,0,0,1.90934123603023,0.158167996790568,0.609958401380546,1.08005340821801,1.67270636811575,1.09181281873089,1.75323650300267,0.661227645802687,0,0,0,0,0,0.165458490457098,0,0,0,0.117357238645754,0,0,0.724752362478018,0.288030006257865,0,0,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0.221985953374065,0.269141569828427,0,0,0,0,0,0.501572104035363,0,0,0.572895513439397,1.20297227640581,0,2.2661816921691,0,1.35096360967266,0,0,0,0.399024873401031,0.853668028770671,0.729320151204882,0,0,0.44449345560323,0.206035057238894,0,0.252697211763798,0,0,0,0.576226371643824,0.402048282689293,1.42888107384922,0.927074607558844,0.578727661391115,1.23625770240992,0.588795680537589,0.685738504770831,0.354951612318675,0.238436189947321,0.436039249896986,0.376437521661322,0.338458431566706,0.73171189149109,0.789209134313529,0.135804113845862,0,0.474540072496697,0.492522411877817,0.409231043169689,0.154936841185966,0.385813221962283,0.249810577937946,0.233931608445408,0.214871054048298,0.191288332068843,0,0 | |||
|short_description=p@chr3:34552508..34552515,+ | |||
}} |
Revision as of 02:09, 14 September 2013
Short description: | p@chr3:34552508..34552515, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:34552508..34552515, + |
Coexpression cluster: | MCL_coexpression_mm9:1027 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 2.13e-20 | 43 |
ectodermal cell | 9.06e-20 | 44 |
neurectodermal cell | 9.06e-20 | 44 |
neuron | 1.26e-19 | 33 |
neuronal stem cell | 1.26e-19 | 33 |
neuroblast | 1.26e-19 | 33 |
electrically signaling cell | 1.26e-19 | 33 |
electrically responsive cell | 1.14e-15 | 39 |
electrically active cell | 1.14e-15 | 39 |
CNS neuron (sensu Vertebrata) | 1.53e-13 | 23 |
neuroblast (sensu Vertebrata) | 1.53e-13 | 23 |
embryonic cell | 6.34e-11 | 70 |
neuron of cerebral cortex | 7.20e-10 | 6 |
autonomic neuron | 4.32e-08 | 9 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.