FFCP PHASE1:Mm9::chr5:143732193..143732205,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=3512|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr5:143732193..143732205,+|id=chr5:143732193..143732205,+|ontology_enrichment_celltype=CL:0000055!1.95e-16!50;CL:0002319!6.68e-14!43;CL:0000221!1.11e-13!44;CL:0000133!1.11e-13!44;CL:0000393!1.75e-13!39;CL:0000211!1.75e-13!39;CL:0000540!2.55e-10!33;CL:0000047!2.55e-10!33;CL:0000031!2.55e-10!33;CL:0000404!2.55e-10!33;CL:0000117!1.72e-08!23;CL:0000337!1.72e-08!23;CL:0002321!1.54e-07!70;CL:0000220!1.54e-07!70|ontology_enrichment_celltype_v019_2=CL:0002319,6.53e-27,43;CL:0000221,3.70e-26,44;CL:0000133,3.70e-26,44;CL:0000393,5.68e-22,39;CL:0000211,5.68e-22,39;CL:0002321,2.35e-20,70;CL:0000540,3.24e-17,33;CL:0000047,3.24e-17,33;CL:0000031,3.24e-17,33;CL:0000404,3.24e-17,33;CL:0002453,5.49e-14,8;CL:0000117,1.84e-13,23;CL:0000337,1.84e-13,23;CL:0000333,5.99e-11,10;CL:0000095,5.99e-11,10;CL:0000243,5.99e-11,10;CL:0000123,5.99e-11,10;CL:0000125,5.99e-11,10;CL:0000030,5.99e-11,10;CL:0000339,5.99e-11,10;CL:0000723,2.49e-10,91;CL:0000048,2.49e-10,91;CL:0000034,2.96e-10,97;CL:0000128,3.11e-10,6;CL:0000126,3.11e-10,6;CL:0000127,3.11e-10,6;CL:0002613,2.87e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.58e-14!73;UBERON:0005743!2.58e-14!73;UBERON:0000073!2.75e-14!75;UBERON:0001016!2.75e-14!75;UBERON:0002020!2.06e-12!34;UBERON:0004121!2.47e-12!102;UBERON:0000924!2.47e-12!102;UBERON:0006601!2.47e-12!102;UBERON:0002346!2.58e-10!71;UBERON:0003075!2.58e-10!71;UBERON:0007284!2.58e-10!71;UBERON:0002791!4.47e-10!29;UBERON:0003528!4.47e-10!29;UBERON:0001893!4.47e-10!29;UBERON:0001049!5.76e-09!52;UBERON:0005068!5.76e-09!52;UBERON:0006241!5.76e-09!52;UBERON:0007135!5.76e-09!52;UBERON:0003056!7.94e-09!49;UBERON:0000956!1.33e-08!21;UBERON:0001869!1.33e-08!21;UBERON:0000203!1.33e-08!21;UBERON:0002780!1.33e-08!39;UBERON:0001890!1.33e-08!39;UBERON:0006240!1.33e-08!39;UBERON:0003080!4.68e-08!40;UBERON:0000033!4.41e-07!63;UBERON:0002619!6.41e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.48e-19,73;UBERON:0001016,1.25e-18,75;UBERON:0002020,4.85e-15,34;UBERON:0004121,3.00e-13,95;UBERON:0000924,3.00e-13,95;UBERON:0006601,3.00e-13,95;UBERON:0003528,3.77e-12,29;UBERON:0002791,3.77e-12,29;UBERON:0001893,3.77e-12,29;UBERON:0001049,8.57e-10,52;UBERON:0005068,8.57e-10,52;UBERON:0006241,8.57e-10,52;UBERON:0007135,8.57e-10,52;UBERON:0000073,2.84e-09,54;UBERON:0002346,3.03e-09,64;UBERON:0003075,3.03e-09,64;UBERON:0007284,3.03e-09,64;UBERON:0000956,4.45e-09,21;UBERON:0001869,4.45e-09,21;UBERON:0000203,4.45e-09,21;UBERON:0002780,3.28e-08,39;UBERON:0001890,3.28e-08,39;UBERON:0006240,3.28e-08,39;UBERON:0003080,6.30e-08,40;UBERON:0002616,1.00e-07,46;UBERON:0010371,1.56e-07,73;UBERON:0000955,1.73e-07,47;UBERON:0006238,1.73e-07,47|phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.88845226963366,1.72340783073175,0.917733760808408,0,5.23260375313072,2.41654801007919,2.52758868796568,2.2397827460058,8.62515386189829,0,0,0,2.57259436035947,1.14613375975503,0.515672092277442,1.61853168687678,3.1739458756322,0.633831403506179,2.37191172448392,3.55717918444456,0,0,0,1.19840044207362,3.07374644257244,2.28117147078651,2.97013064329719,1.68259969081106,0.856952953211411,1.76694832761291,0.61245399607477,0.670918297127655,1.83843757322004,0,0,0.307213066512487,1.05509030184155,1.9212405156506,3.64639359389732,0,1.12552522006336,0.61119299110724,1.47314292736834,1.28134512719193,0.372798891650601,0.302904773332736,0.0755715601067855,0,0,0,0,0,0,0,0.852151612890289,0.259786004602869,0.70667914902068,0.14084341977668,0,0,0,0.432982082022428,0.253359865475099,0,0,1.29468941823586,0.148442139064825,0,0.304465478312141,0,0.452167921657868,0.117588707135705,0.125666591329675,0.247194967734374,0.144599356919912,0,0.485300549842228,0,0,0,0,0,0,0,0,0,0,0,0.879580464790051,0.173824320192276,0.255715457330331,0.41557608911912,0,0.81471491080253,0.124406970610093,0,0,0.780722657776222,0.919608417733892,0.720248519221397,0.452114453507145,0.408218994907967,0.12811372028485,0.655912071918102,0,2.80238390812695,0.945530400839096,1.23165786914764,0.219195732427575,0.278047249225598,0,0,0.199034266818493,0,0,0,0.828503090142008,0.469052119962192,0.540186184383045,0,0,0,0,0.268273401399619,0,0,0.164167464079095,0.243206428637567,0.146199987425332,0,0.268412837520744,0.210289948564127,0.411618449517138,0,0,0.853153002140936,0.232236671860439,0,0.605050573870028,0.22237804384487,0.190225626112559,0,0,0,0,0,0,0,0,0.948339504765408,0.571242563048644,1.1270773567308,0.407302655690628,0.387904974335251,0.0701358198903186,0.0632365371242573,0,0.156998727841375,0,0,0.166845105716094,0,0.224862112384854,0,0.241177159752417,0,0,0,0.274561413188081,0,0,0.312037673114561,0,0.179397413521912,0,0,0.947457058852424,0.162964976442026,0.678980343100753,0,0.167506257441816,0,0.195133647857799,0.157635144106191,0.221464689648775,0.159454768657487,0,0,0.144649058581512,0,0,0,0,0,0.234423373184406,0.819674726883377,0.252470927204373,0.631016438832513,2.34263246577983,1.07711698866399,1.43381278771531,0.222798674082394,0,1.21443210502468,1.75353514746787,0,0.642642632843614,0.141940085208269,0,0.325773918707152,0.164970122972535,0,0.242780636154981,0,0,0,0.307435147943927,0,0.363533729477506,1.06949213515416,0,0,0,0,0,0.646793418913773,0.857348140126369,0.177340233642274,0.356737635204141,0.329098041204242,0,0.469343416127421,0.847328283455281,0,0.16488625294148,0,0.120625849856312,0.238744688006273,0,0,0.556275906031529,0,1.03193433981611,0,0,0,0,0,0,0,0,0.316335993581135,0.203319467126849,0.324016022465404,0,0.218362563746178,0,0.0826534557253359,0,0,0,0,0.299033092087958,0.165458490457098,0.388902376688095,0.645799117388655,0.337912250981556,0.117357238645754,0.13020438484395,0,0,0,0,0.405450430580328,0.308132871494482,0,0,0,0,0.147689527174577,0.100966449948148,0,0.100826185136841,0,0,0,0.226730383615211,0.221985953374065,0.358855426437903,1.17519231454855,0,0,0,0,0,0.564751842617067,1.38097570952153,0.572895513439397,0.68741272937475,0,2.2661816921691,3.37511250115903,0.45032120322422,0.453142408984205,1.55328093525546,0.726511433089237,0.399024873401031,0.682934423016537,0.972426868273176,0.628839487883947,0.183843508450014,0.44449345560323,0.412070114477788,0.64183841918363,0.252697211763798,0,0.188626341386076,0.749132059759059,0.448176066834085,0.287177344778066,0.476293691283074,0,0.38581844092741,0,0.441596760403192,0.342869252385415,0.177475806159338,0,0.290692833264657,0.470546902076653,0,0.365855945745545,0.263069711437843,0.543216455383447,0,0.237270036248348,0.197008964751127,0,0.154936841185966,0.385813221962283,0.749431733813838,0.467863216890817,0.214871054048298,0.382576664137687,0.441182838239031,0.231867835620421|short_description=p@chr5:143732193..143732205,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=3512 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr5:143732193..143732205,+ | |||
|id=chr5:143732193..143732205,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.95e-16!50;CL:0002319!6.68e-14!43;CL:0000221!1.11e-13!44;CL:0000133!1.11e-13!44;CL:0000393!1.75e-13!39;CL:0000211!1.75e-13!39;CL:0000540!2.55e-10!33;CL:0000047!2.55e-10!33;CL:0000031!2.55e-10!33;CL:0000404!2.55e-10!33;CL:0000117!1.72e-08!23;CL:0000337!1.72e-08!23;CL:0002321!1.54e-07!70;CL:0000220!1.54e-07!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,6.53e-27,43;CL:0000221,3.70e-26,44;CL:0000133,3.70e-26,44;CL:0000393,5.68e-22,39;CL:0000211,5.68e-22,39;CL:0002321,2.35e-20,70;CL:0000540,3.24e-17,33;CL:0000047,3.24e-17,33;CL:0000031,3.24e-17,33;CL:0000404,3.24e-17,33;CL:0002453,5.49e-14,8;CL:0000117,1.84e-13,23;CL:0000337,1.84e-13,23;CL:0000333,5.99e-11,10;CL:0000095,5.99e-11,10;CL:0000243,5.99e-11,10;CL:0000123,5.99e-11,10;CL:0000125,5.99e-11,10;CL:0000030,5.99e-11,10;CL:0000339,5.99e-11,10;CL:0000723,2.49e-10,91;CL:0000048,2.49e-10,91;CL:0000034,2.96e-10,97;CL:0000128,3.11e-10,6;CL:0000126,3.11e-10,6;CL:0000127,3.11e-10,6;CL:0002613,2.87e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.58e-14!73;UBERON:0005743!2.58e-14!73;UBERON:0000073!2.75e-14!75;UBERON:0001016!2.75e-14!75;UBERON:0002020!2.06e-12!34;UBERON:0004121!2.47e-12!102;UBERON:0000924!2.47e-12!102;UBERON:0006601!2.47e-12!102;UBERON:0002346!2.58e-10!71;UBERON:0003075!2.58e-10!71;UBERON:0007284!2.58e-10!71;UBERON:0002791!4.47e-10!29;UBERON:0003528!4.47e-10!29;UBERON:0001893!4.47e-10!29;UBERON:0001049!5.76e-09!52;UBERON:0005068!5.76e-09!52;UBERON:0006241!5.76e-09!52;UBERON:0007135!5.76e-09!52;UBERON:0003056!7.94e-09!49;UBERON:0000956!1.33e-08!21;UBERON:0001869!1.33e-08!21;UBERON:0000203!1.33e-08!21;UBERON:0002780!1.33e-08!39;UBERON:0001890!1.33e-08!39;UBERON:0006240!1.33e-08!39;UBERON:0003080!4.68e-08!40;UBERON:0000033!4.41e-07!63;UBERON:0002619!6.41e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.48e-19,73;UBERON:0001016,1.25e-18,75;UBERON:0002020,4.85e-15,34;UBERON:0004121,3.00e-13,95;UBERON:0000924,3.00e-13,95;UBERON:0006601,3.00e-13,95;UBERON:0003528,3.77e-12,29;UBERON:0002791,3.77e-12,29;UBERON:0001893,3.77e-12,29;UBERON:0001049,8.57e-10,52;UBERON:0005068,8.57e-10,52;UBERON:0006241,8.57e-10,52;UBERON:0007135,8.57e-10,52;UBERON:0000073,2.84e-09,54;UBERON:0002346,3.03e-09,64;UBERON:0003075,3.03e-09,64;UBERON:0007284,3.03e-09,64;UBERON:0000956,4.45e-09,21;UBERON:0001869,4.45e-09,21;UBERON:0000203,4.45e-09,21;UBERON:0002780,3.28e-08,39;UBERON:0001890,3.28e-08,39;UBERON:0006240,3.28e-08,39;UBERON:0003080,6.30e-08,40;UBERON:0002616,1.00e-07,46;UBERON:0010371,1.56e-07,73;UBERON:0000955,1.73e-07,47;UBERON:0006238,1.73e-07,47 | |||
|phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.88845226963366,1.72340783073175,0.917733760808408,0,5.23260375313072,2.41654801007919,2.52758868796568,2.2397827460058,8.62515386189829,0,0,0,2.57259436035947,1.14613375975503,0.515672092277442,1.61853168687678,3.1739458756322,0.633831403506179,2.37191172448392,3.55717918444456,0,0,0,1.19840044207362,3.07374644257244,2.28117147078651,2.97013064329719,1.68259969081106,0.856952953211411,1.76694832761291,0.61245399607477,0.670918297127655,1.83843757322004,0,0,0.307213066512487,1.05509030184155,1.9212405156506,3.64639359389732,0,1.12552522006336,0.61119299110724,1.47314292736834,1.28134512719193,0.372798891650601,0.302904773332736,0.0755715601067855,0,0,0,0,0,0,0,0.852151612890289,0.259786004602869,0.70667914902068,0.14084341977668,0,0,0,0.432982082022428,0.253359865475099,0,0,1.29468941823586,0.148442139064825,0,0.304465478312141,0,0.452167921657868,0.117588707135705,0.125666591329675,0.247194967734374,0.144599356919912,0,0.485300549842228,0,0,0,0,0,0,0,0,0,0,0,0.879580464790051,0.173824320192276,0.255715457330331,0.41557608911912,0,0.81471491080253,0.124406970610093,0,0,0.780722657776222,0.919608417733892,0.720248519221397,0.452114453507145,0.408218994907967,0.12811372028485,0.655912071918102,0,2.80238390812695,0.945530400839096,1.23165786914764,0.219195732427575,0.278047249225598,0,0,0.199034266818493,0,0,0,0.828503090142008,0.469052119962192,0.540186184383045,0,0,0,0,0.268273401399619,0,0,0.164167464079095,0.243206428637567,0.146199987425332,0,0.268412837520744,0.210289948564127,0.411618449517138,0,0,0.853153002140936,0.232236671860439,0,0.605050573870028,0.22237804384487,0.190225626112559,0,0,0,0,0,0,0,0,0.948339504765408,0.571242563048644,1.1270773567308,0.407302655690628,0.387904974335251,0.0701358198903186,0.0632365371242573,0,0.156998727841375,0,0,0.166845105716094,0,0.224862112384854,0,0.241177159752417,0,0,0,0.274561413188081,0,0,0.312037673114561,0,0.179397413521912,0,0,0.947457058852424,0.162964976442026,0.678980343100753,0,0.167506257441816,0,0.195133647857799,0.157635144106191,0.221464689648775,0.159454768657487,0,0,0.144649058581512,0,0,0,0,0,0.234423373184406,0.819674726883377,0.252470927204373,0.631016438832513,2.34263246577983,1.07711698866399,1.43381278771531,0.222798674082394,0,1.21443210502468,1.75353514746787,0,0.642642632843614,0.141940085208269,0,0.325773918707152,0.164970122972535,0,0.242780636154981,0,0,0,0.307435147943927,0,0.363533729477506,1.06949213515416,0,0,0,0,0,0.646793418913773,0.857348140126369,0.177340233642274,0.356737635204141,0.329098041204242,0,0.469343416127421,0.847328283455281,0,0.16488625294148,0,0.120625849856312,0.238744688006273,0,0,0.556275906031529,0,1.03193433981611,0,0,0,0,0,0,0,0,0.316335993581135,0.203319467126849,0.324016022465404,0,0.218362563746178,0,0.0826534557253359,0,0,0,0,0.299033092087958,0.165458490457098,0.388902376688095,0.645799117388655,0.337912250981556,0.117357238645754,0.13020438484395,0,0,0,0,0.405450430580328,0.308132871494482,0,0,0,0,0.147689527174577,0.100966449948148,0,0.100826185136841,0,0,0,0.226730383615211,0.221985953374065,0.358855426437903,1.17519231454855,0,0,0,0,0,0.564751842617067,1.38097570952153,0.572895513439397,0.68741272937475,0,2.2661816921691,3.37511250115903,0.45032120322422,0.453142408984205,1.55328093525546,0.726511433089237,0.399024873401031,0.682934423016537,0.972426868273176,0.628839487883947,0.183843508450014,0.44449345560323,0.412070114477788,0.64183841918363,0.252697211763798,0,0.188626341386076,0.749132059759059,0.448176066834085,0.287177344778066,0.476293691283074,0,0.38581844092741,0,0.441596760403192,0.342869252385415,0.177475806159338,0,0.290692833264657,0.470546902076653,0,0.365855945745545,0.263069711437843,0.543216455383447,0,0.237270036248348,0.197008964751127,0,0.154936841185966,0.385813221962283,0.749431733813838,0.467863216890817,0.214871054048298,0.382576664137687,0.441182838239031,0.231867835620421 | |||
|short_description=p@chr5:143732193..143732205,+ | |||
}} |
Revision as of 06:57, 14 September 2013
Short description: | p@chr5:143732193..143732205, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr5:143732193..143732205, + |
Coexpression cluster: | MCL_coexpression_mm9:3512 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 6.53e-27 | 43 |
ectodermal cell | 3.70e-26 | 44 |
neurectodermal cell | 3.70e-26 | 44 |
electrically responsive cell | 5.68e-22 | 39 |
electrically active cell | 5.68e-22 | 39 |
embryonic cell | 2.35e-20 | 70 |
neuron | 3.24e-17 | 33 |
neuronal stem cell | 3.24e-17 | 33 |
neuroblast | 3.24e-17 | 33 |
electrically signaling cell | 3.24e-17 | 33 |
oligodendrocyte precursor cell | 5.49e-14 | 8 |
CNS neuron (sensu Vertebrata) | 1.84e-13 | 23 |
neuroblast (sensu Vertebrata) | 1.84e-13 | 23 |
migratory neural crest cell | 5.99e-11 | 10 |
neuron associated cell | 5.99e-11 | 10 |
glial cell (sensu Vertebrata) | 5.99e-11 | 10 |
neuron associated cell (sensu Vertebrata) | 5.99e-11 | 10 |
glial cell | 5.99e-11 | 10 |
glioblast | 5.99e-11 | 10 |
glioblast (sensu Vertebrata) | 5.99e-11 | 10 |
somatic stem cell | 2.49e-10 | 91 |
multi fate stem cell | 2.49e-10 | 91 |
stem cell | 2.96e-10 | 97 |
oligodendrocyte | 3.11e-10 | 6 |
macroglial cell | 3.11e-10 | 6 |
astrocyte | 3.11e-10 | 6 |
striatum neuron | 2.87e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.48e-19 | 73 |
nervous system | 1.25e-18 | 75 |
gray matter | 4.85e-15 | 34 |
ectoderm-derived structure | 3.00e-13 | 95 |
ectoderm | 3.00e-13 | 95 |
presumptive ectoderm | 3.00e-13 | 95 |
brain grey matter | 3.77e-12 | 29 |
regional part of telencephalon | 3.77e-12 | 29 |
telencephalon | 3.77e-12 | 29 |
neural tube | 8.57e-10 | 52 |
neural rod | 8.57e-10 | 52 |
future spinal cord | 8.57e-10 | 52 |
neural keel | 8.57e-10 | 52 |
regional part of nervous system | 2.84e-09 | 54 |
neurectoderm | 3.03e-09 | 64 |
neural plate | 3.03e-09 | 64 |
presumptive neural plate | 3.03e-09 | 64 |
cerebral cortex | 4.45e-09 | 21 |
cerebral hemisphere | 4.45e-09 | 21 |
pallium | 4.45e-09 | 21 |
regional part of forebrain | 3.28e-08 | 39 |
forebrain | 3.28e-08 | 39 |
future forebrain | 3.28e-08 | 39 |
anterior neural tube | 6.30e-08 | 40 |
regional part of brain | 1.00e-07 | 46 |
ecto-epithelium | 1.56e-07 | 73 |
brain | 1.73e-07 | 47 |
future brain | 1.73e-07 | 47 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.