FFCP PHASE1:Mm9::chr3:156224914..156224957,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=320840|HGNC=|MCL_coexpression_id=39|UniProt=A0A4W9,D3Z4T6|association_with_transcript=0bp_to_ENSMUST00000041425,ENSMUST00000106065,NM_177274_5end|description=CAGE_peak_3_at_Negr1_5end|id=chr3:156224914..156224957,+|ontology_enrichment_celltype=CL:0000117!5.48e-11!23;CL:0000337!5.48e-11!23;CL:0000540!2.48e-10!33;CL:0000047!2.48e-10!33;CL:0000031!2.48e-10!33;CL:0000404!2.48e-10!33;CL:0000393!7.59e-10!39;CL:0000211!7.59e-10!39;CL:0000221!3.82e-08!44;CL:0000133!3.82e-08!44;CL:0002319!9.12e-08!43;CL:0000055!3.73e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,2.45e-12,23;CL:0000337,2.45e-12,23;CL:0000540,1.39e-11,33;CL:0000047,1.39e-11,33;CL:0000031,1.39e-11,33;CL:0000404,1.39e-11,33;CL:0000393,3.17e-10,39;CL:0000211,3.17e-10,39;CL:0000221,1.41e-07,44;CL:0000133,1.41e-07,44;CL:0002319,3.55e-07,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!6.16e-27!102;UBERON:0000924!6.16e-27!102;UBERON:0006601!6.16e-27!102;UBERON:0001017!1.62e-25!73;UBERON:0005743!1.62e-25!73;UBERON:0000033!6.25e-25!63;UBERON:0000073!9.55e-25!75;UBERON:0001016!9.55e-25!75;UBERON:0002346!3.21e-24!71;UBERON:0003075!3.21e-24!71;UBERON:0007284!3.21e-24!71;UBERON:0001049!5.66e-23!52;UBERON:0005068!5.66e-23!52;UBERON:0006241!5.66e-23!52;UBERON:0007135!5.66e-23!52;UBERON:0000955!5.51e-22!50;UBERON:0006238!5.51e-22!50;UBERON:0002616!3.08e-21!49;UBERON:0003056!5.19e-21!49;UBERON:0003080!3.23e-18!40;UBERON:0002780!1.55e-17!39;UBERON:0001890!1.55e-17!39;UBERON:0006240!1.55e-17!39;UBERON:0002020!1.99e-16!34;UBERON:0002791!1.21e-13!29;UBERON:0003528!1.21e-13!29;UBERON:0001893!1.21e-13!29;UBERON:0007811!3.59e-13!86;UBERON:0000153!7.19e-13!94;UBERON:0000956!1.85e-09!21;UBERON:0001869!1.85e-09!21;UBERON:0000203!1.85e-09!21;UBERON:0004111!1.16e-08!122;UBERON:0002619!1.42e-08!17;UBERON:0000025!1.63e-08!114;UBERON:0000468!2.36e-08!333;UBERON:0002021!7.69e-08!10;UBERON:0000411!7.69e-08!10;UBERON:0001950!7.69e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.63e-27,73;UBERON:0000073,6.29e-27,54;UBERON:0002346,1.83e-26,64;UBERON:0003075,1.83e-26,64;UBERON:0007284,1.83e-26,64;UBERON:0004121,3.43e-26,95;UBERON:0000924,3.43e-26,95;UBERON:0006601,3.43e-26,95;UBERON:0001016,9.39e-26,75;UBERON:0001049,1.83e-25,52;UBERON:0005068,1.83e-25,52;UBERON:0006241,1.83e-25,52;UBERON:0007135,1.83e-25,52;UBERON:0010371,1.18e-24,73;UBERON:0003056,1.05e-22,49;UBERON:0000955,3.33e-22,47;UBERON:0006238,3.33e-22,47;UBERON:0002616,2.25e-21,46;UBERON:0003080,4.11e-20,40;UBERON:0002780,2.46e-19,39;UBERON:0001890,2.46e-19,39;UBERON:0006240,2.46e-19,39;UBERON:0010314,1.58e-18,92;UBERON:0002020,4.68e-18,34;UBERON:0003528,6.93e-15,29;UBERON:0002791,6.93e-15,29;UBERON:0001893,6.93e-15,29;UBERON:0000956,3.90e-10,21;UBERON:0001869,3.90e-10,21;UBERON:0000203,3.90e-10,21;UBERON:0002619,4.19e-09,17;UBERON:0002021,9.64e-09,10;UBERON:0000411,9.64e-09,10;UBERON:0001950,9.64e-09,10;UBERON:0004111,2.66e-08,122;UBERON:0000025,5.49e-08,114|phase1_expression=2.7225304007815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202475267389826,0,0,0,0,5.78294373027274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.683045484958446,0,1.38486499773135,3.14268486780495,2.20256102594018,0,0.436050312760893,0.659058548203415,1.55543919259427,0.279972843250725,1.43752564364972,0,0,0,0.257259436035947,0.573066879877513,0.515672092277442,6.87875966922632,4.23192783417626,3.80298842103708,0,0,0,0,0,0.898800331555214,0.384218305321555,2.59224030771194,1.75507719831198,1.68259969081106,7.7125765789027,7.95126747425809,1.95985278743926,2.20444583341944,3.67687514644008,5.50579404996943,15.9609172606485,11.981309593987,4.74790635828698,8.41686321142169,9.37644067002168,10.6089539620525,11.8180148106653,13.2934475565825,9.1334861496837,14.8066548031067,6.15118171223492,0.37863096666592,0.68014404096107,0,0,0,0,0,0,1.12355536105401,0,0,0,4.50698943285378,3.84979432242953,7.64415719119937,7.11066703153331,0,0,0,1.1418387971906,1.03575153458869,2.82040064223167,1.21439728736295,0.608930956624282,0.230615497256059,1.50722640552623,1.64624189989987,2.63899841792318,0,8.82056077211461,0,0.808834249737046,1.10420759230197,0,0,37.475942017478,48.3821892739081,0,0,0,0,14.9790639404823,5.94750783664214,5.15182843662744,14.2535942557667,15.8543583544805,10.8049783170971,11.8436122039463,1.2220723662038,1.24406970610093,0.252722758433675,6.31325567659422,1.69156575851515,0.919608417733892,2.70093194708024,2.10986744970001,4.01415344992834,5.50888997224854,3.74806898238915,12.1590584247337,0.215567992932842,1.51284864134255,0.879755620819744,1.09597866213787,2.22437799380478,0.696504333044333,0.61734640922383,0.995171334092466,0,0,0,1.44988040774851,0.234526059981096,1.44049649168812,0.946978942340841,0.393528463494808,0,0.232533944750408,1.07309360559848,0.467061369468678,0.329119699826961,0.985004784474571,0.972825714550269,1.02339991197733,0.439100230582101,1.07365135008297,9.04246778825747,3.91037527041281,0,0,1.70630600428187,1.16118335930219,1.80414445850931,0.806734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| ||
|EntrezGene=320840 | |||
|HGNC= | |||
|MCL_coexpression_id=39 | |||
|UniProt=A0A4W9,D3Z4T6 | |||
|association_with_transcript=0bp_to_ENSMUST00000041425,ENSMUST00000106065,NM_177274_5end | |||
|description=CAGE_peak_3_at_Negr1_5end | |||
|id=chr3:156224914..156224957,+ | |||
|ontology_enrichment_celltype=CL:0000117!5.48e-11!23;CL:0000337!5.48e-11!23;CL:0000540!2.48e-10!33;CL:0000047!2.48e-10!33;CL:0000031!2.48e-10!33;CL:0000404!2.48e-10!33;CL:0000393!7.59e-10!39;CL:0000211!7.59e-10!39;CL:0000221!3.82e-08!44;CL:0000133!3.82e-08!44;CL:0002319!9.12e-08!43;CL:0000055!3.73e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.45e-12,23;CL:0000337,2.45e-12,23;CL:0000540,1.39e-11,33;CL:0000047,1.39e-11,33;CL:0000031,1.39e-11,33;CL:0000404,1.39e-11,33;CL:0000393,3.17e-10,39;CL:0000211,3.17e-10,39;CL:0000221,1.41e-07,44;CL:0000133,1.41e-07,44;CL:0002319,3.55e-07,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!6.16e-27!102;UBERON:0000924!6.16e-27!102;UBERON:0006601!6.16e-27!102;UBERON:0001017!1.62e-25!73;UBERON:0005743!1.62e-25!73;UBERON:0000033!6.25e-25!63;UBERON:0000073!9.55e-25!75;UBERON:0001016!9.55e-25!75;UBERON:0002346!3.21e-24!71;UBERON:0003075!3.21e-24!71;UBERON:0007284!3.21e-24!71;UBERON:0001049!5.66e-23!52;UBERON:0005068!5.66e-23!52;UBERON:0006241!5.66e-23!52;UBERON:0007135!5.66e-23!52;UBERON:0000955!5.51e-22!50;UBERON:0006238!5.51e-22!50;UBERON:0002616!3.08e-21!49;UBERON:0003056!5.19e-21!49;UBERON:0003080!3.23e-18!40;UBERON:0002780!1.55e-17!39;UBERON:0001890!1.55e-17!39;UBERON:0006240!1.55e-17!39;UBERON:0002020!1.99e-16!34;UBERON:0002791!1.21e-13!29;UBERON:0003528!1.21e-13!29;UBERON:0001893!1.21e-13!29;UBERON:0007811!3.59e-13!86;UBERON:0000153!7.19e-13!94;UBERON:0000956!1.85e-09!21;UBERON:0001869!1.85e-09!21;UBERON:0000203!1.85e-09!21;UBERON:0004111!1.16e-08!122;UBERON:0002619!1.42e-08!17;UBERON:0000025!1.63e-08!114;UBERON:0000468!2.36e-08!333;UBERON:0002021!7.69e-08!10;UBERON:0000411!7.69e-08!10;UBERON:0001950!7.69e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.63e-27,73;UBERON:0000073,6.29e-27,54;UBERON:0002346,1.83e-26,64;UBERON:0003075,1.83e-26,64;UBERON:0007284,1.83e-26,64;UBERON:0004121,3.43e-26,95;UBERON:0000924,3.43e-26,95;UBERON:0006601,3.43e-26,95;UBERON:0001016,9.39e-26,75;UBERON:0001049,1.83e-25,52;UBERON:0005068,1.83e-25,52;UBERON:0006241,1.83e-25,52;UBERON:0007135,1.83e-25,52;UBERON:0010371,1.18e-24,73;UBERON:0003056,1.05e-22,49;UBERON:0000955,3.33e-22,47;UBERON:0006238,3.33e-22,47;UBERON:0002616,2.25e-21,46;UBERON:0003080,4.11e-20,40;UBERON:0002780,2.46e-19,39;UBERON:0001890,2.46e-19,39;UBERON:0006240,2.46e-19,39;UBERON:0010314,1.58e-18,92;UBERON:0002020,4.68e-18,34;UBERON:0003528,6.93e-15,29;UBERON:0002791,6.93e-15,29;UBERON:0001893,6.93e-15,29;UBERON:0000956,3.90e-10,21;UBERON:0001869,3.90e-10,21;UBERON:0000203,3.90e-10,21;UBERON:0002619,4.19e-09,17;UBERON:0002021,9.64e-09,10;UBERON:0000411,9.64e-09,10;UBERON:0001950,9.64e-09,10;UBERON:0004111,2.66e-08,122;UBERON:0000025,5.49e-08,114 | |||
|phase1_expression=2.7225304007815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202475267389826,0,0,0,0,5.78294373027274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.683045484958446,0,1.38486499773135,3.14268486780495,2.20256102594018,0,0.436050312760893,0.659058548203415,1.55543919259427,0.279972843250725,1.43752564364972,0,0,0,0.257259436035947,0.573066879877513,0.515672092277442,6.87875966922632,4.23192783417626,3.80298842103708,0,0,0,0,0,0.898800331555214,0.384218305321555,2.59224030771194,1.75507719831198,1.68259969081106,7.7125765789027,7.95126747425809,1.95985278743926,2.20444583341944,3.67687514644008,5.50579404996943,15.9609172606485,11.981309593987,4.74790635828698,8.41686321142169,9.37644067002168,10.6089539620525,11.8180148106653,13.2934475565825,9.1334861496837,14.8066548031067,6.15118171223492,0.37863096666592,0.68014404096107,0,0,0,0,0,0,1.12355536105401,0,0,0,4.50698943285378,3.84979432242953,7.64415719119937,7.11066703153331,0,0,0,1.1418387971906,1.03575153458869,2.82040064223167,1.21439728736295,0.608930956624282,0.230615497256059,1.50722640552623,1.64624189989987,2.63899841792318,0,8.82056077211461,0,0.808834249737046,1.10420759230197,0,0,37.475942017478,48.3821892739081,0,0,0,0,14.9790639404823,5.94750783664214,5.15182843662744,14.2535942557667,15.8543583544805,10.8049783170971,11.8436122039463,1.2220723662038,1.24406970610093,0.252722758433675,6.31325567659422,1.69156575851515,0.919608417733892,2.70093194708024,2.10986744970001,4.01415344992834,5.50888997224854,3.74806898238915,12.1590584247337,0.215567992932842,1.51284864134255,0.879755620819744,1.09597866213787,2.22437799380478,0.696504333044333,0.61734640922383,0.995171334092466,0,0,0,1.44988040774851,0.234526059981096,1.44049649168812,0.946978942340841,0.393528463494808,0,0.232533944750408,1.07309360559848,0.467061369468678,0.329119699826961,0.985004784474571,0.972825714550269,1.02339991197733,0.439100230582101,1.07365135008297,9.04246778825747,3.91037527041281,0,0,1.70630600428187,1.16118335930219,1.80414445850931,0.80673409849337,0.889512175379481,0.951128130562796,0.474529061544512,0.329397909448022,1.25667604400135,1.39269530428806,0.58489226135736,0.898819408654221,0.432276099749388,0.398282546508734,0.379335801906163,2.05647322697512,2.25415471346161,2.03651327845314,2.71533482034676,2.80543279561274,3.73095569033118,1.32849133181642,0.941992367048249,1.1105744752962,0,0.166845105716094,0.393117990226406,0,0,0.241177159752417,0,0,0,0,0,0,0,0,0,0,0.923765950833023,2.65287976478679,1.79261474086228,1.18821560042632,1.64283173801951,1.17254380209271,0.476087281772027,0.780534591431195,0.788175720530955,2.21464689648775,1.91345722388985,1.63863314715738,1.89953480052485,0.867894351489069,0,0,1.96705709207614,1.65562047782839,12.36239542906,12.7760738385501,0.655739781506702,1.26235463602186,0.315508219416257,0,1.29254038639679,1.19484398976276,2.00518806674155,2.83076530788832,1.61924280669958,2.04579100537918,1.97643888973262,17.6726724031994,1.98716119291576,1.06839362200353,1.30309567482861,2.47455184458803,0,0,0,0.188605079755898,0,0.614870295887855,0.258428293168221,0,0,0,1.05418608574999,0,21.4476951624886,3.06103859853227,1.03486947026204,3.42939256050548,5.85222771019503,4.10248280484762,4.11372551505302,2.13125464380219,0,0,0.220528398054962,1.48397627647332,0.807322133479528,0.603129249281559,0.835606408021955,0.492422699235184,0,11.4963687246516,0.170870880797853,0,0,0,0,0,0,0,0,0,0.474503990371703,1.62655573701479,1.72808545314882,1.46361807210128,0.436725127492355,1.21377911746339,0.991841468704031,1.04702376793612,1.03691978633434,0,0,0.299033092087958,0.165458490457098,1.16670713006429,0.129159823477731,0.506868376472335,0.352071715937262,0.781226309063701,0.734015410979976,0.483168241652012,0.576060012515731,0,0,0.102710957164827,0.129920822977795,0.179026695667481,0,0,0,0,0.0762068066549998,0.100826185136841,0.194915761479505,0.0962118416403295,0,1.81384306892169,0,0,0,2.12508553435409,1.31377732815827,4.02933573387983,1.50057865355346,0,14.6835479080437,12.4287813856938,17.7597609166213,12.3734291287455,10.9613203163303,15.8632718451837,12.1504050041725,15.7612421128477,16.3131267234314,16.0505696643064,0.103787347584177,2.39414924040619,0.853668028770671,0.729320151204882,0.419226325255965,0.919217542250071,1.77797382241292,1.23621034343337,1.92551525755089,2.27427490587418,2.02783439912192,3.77252682772152,2.62196220915671,2.36893063898016,3.15895079255873,0.476293691283074,3.24476112645595,3.6652751888104,3.29668720642645,3.67997300335993,3.08582327146874,2.30718548007139,2.38436189947321,1.88950341622027,3.01150017329058,2.36920902096694,1.82927972872773,2.36762740294059,1.62964936615034,1.68342681497322,2.13543032623513,2.06859412988683,1.22769312950907,2.16911577660352,1.54325288784913,2.49810577937946,1.87145286756327,2.14871054048298,2.86932498103265,1.54413993383661,1.15933917810211 | |||
|short_description=p3@Negr1 | |||
}} |
Revision as of 01:54, 14 September 2013
Short description: | p3@Negr1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Negr1_5end |
Coexpression cluster: | MCL_coexpression_mm9:39 |
Association with transcript: | 0bp_to_ENSMUST00000041425, ENSMUST00000106065, NM_177274_5end |
EntrezGene: | Negr1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.45e-12 | 23 |
neuroblast (sensu Vertebrata) | 2.45e-12 | 23 |
neuron | 1.39e-11 | 33 |
neuronal stem cell | 1.39e-11 | 33 |
neuroblast | 1.39e-11 | 33 |
electrically signaling cell | 1.39e-11 | 33 |
electrically responsive cell | 3.17e-10 | 39 |
electrically active cell | 3.17e-10 | 39 |
ectodermal cell | 1.41e-07 | 44 |
neurectodermal cell | 1.41e-07 | 44 |
neural cell | 3.55e-07 | 43 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.