FFCP PHASE1:Mm9::chr1:5009423..5009478,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=58175|HGNC=|MCL_coexpression_id=2|UniProt=E9Q1A3|association_with_transcript=0bp_to_ENSMUST00000156289,ENSMUST00000170566_5end|description=CAGE_peak_1_at_Rgs20_5end|id=chr1:5009423..5009478,-|ontology_enrichment_celltype=CL:0002319!6.00e-15!43;CL:0000221!1.05e-14!44;CL:0000133!1.05e-14!44;CL:0000055!2.20e-14!50;CL:0000117!1.05e-11!23;CL:0000337!1.05e-11!23;CL:0000393!2.05e-10!39;CL:0000211!2.05e-10!39;CL:0000540!3.60e-10!33;CL:0000047!3.60e-10!33;CL:0000031!3.60e-10!33;CL:0000404!3.60e-10!33;CL:0002321!4.87e-08!70;CL:0000220!4.87e-08!70|ontology_enrichment_celltype_v019_2=CL:0000117,1.84e-14,23;CL:0000337,1.84e-14,23;CL:0002319,1.43e-13,43;CL:0000221,5.66e-13,44;CL:0000133,5.66e-13,44;CL:0000540,4.04e-08,33;CL:0000047,4.04e-08,33;CL:0000031,4.04e-08,33;CL:0000404,4.04e-08,33;CL:0002321,1.09e-07,70;CL:0000333,2.62e-07,10;CL:0000095,2.62e-07,10;CL:0000243,2.62e-07,10;CL:0000123,2.62e-07,10;CL:0000125,2.62e-07,10;CL:0000030,2.62e-07,10;CL:0000339,2.62e-07,10;CL:0000393,2.72e-07,39;CL:0000211,2.72e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!8.18e-34!102;UBERON:0000924!8.18e-34!102;UBERON:0006601!8.18e-34!102;UBERON:0000073!3.46e-31!75;UBERON:0001016!3.46e-31!75;UBERON:0001017!2.00e-30!73;UBERON:0005743!2.00e-30!73;UBERON:0001049!3.86e-25!52;UBERON:0005068!3.86e-25!52;UBERON:0006241!3.86e-25!52;UBERON:0007135!3.86e-25!52;UBERON:0000955!3.90e-24!50;UBERON:0006238!3.90e-24!50;UBERON:0002616!1.95e-23!49;UBERON:0000033!2.96e-23!63;UBERON:0002346!5.70e-23!71;UBERON:0003075!5.70e-23!71;UBERON:0007284!5.70e-23!71;UBERON:0002020!1.39e-20!34;UBERON:0003080!6.94e-19!40;UBERON:0002780!2.98e-18!39;UBERON:0001890!2.98e-18!39;UBERON:0006240!2.98e-18!39;UBERON:0003056!4.91e-18!49;UBERON:0002791!6.90e-18!29;UBERON:0003528!6.90e-18!29;UBERON:0001893!6.90e-18!29;UBERON:0007811!2.34e-14!86;UBERON:0000956!7.10e-14!21;UBERON:0001869!7.10e-14!21;UBERON:0000203!7.10e-14!21;UBERON:0000153!2.66e-13!94;UBERON:0002619!8.55e-12!17;UBERON:0002021!1.70e-08!10;UBERON:0000411!1.70e-08!10;UBERON:0001950!1.70e-08!10;UBERON:0003076!8.02e-07!12;UBERON:0003057!8.02e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.00e-30,95;UBERON:0000924,1.00e-30,95;UBERON:0006601,1.00e-30,95;UBERON:0001016,1.77e-29,75;UBERON:0000073,5.34e-29,54;UBERON:0001017,1.50e-28,73;UBERON:0001049,1.75e-27,52;UBERON:0005068,1.75e-27,52;UBERON:0006241,1.75e-27,52;UBERON:0007135,1.75e-27,52;UBERON:0002020,9.00e-26,34;UBERON:0010371,2.10e-24,73;UBERON:0000955,4.62e-24,47;UBERON:0006238,4.62e-24,47;UBERON:0002616,3.20e-23,46;UBERON:0003528,2.46e-22,29;UBERON:0002791,2.46e-22,29;UBERON:0001893,2.46e-22,29;UBERON:0002346,5.51e-22,64;UBERON:0003075,5.51e-22,64;UBERON:0007284,5.51e-22,64;UBERON:0003080,1.02e-19,40;UBERON:0002780,6.08e-19,39;UBERON:0001890,6.08e-19,39;UBERON:0006240,6.08e-19,39;UBERON:0000956,3.17e-17,21;UBERON:0001869,3.17e-17,21;UBERON:0000203,3.17e-17,21;UBERON:0003056,1.31e-16,49;UBERON:0002619,1.41e-14,17;UBERON:0010314,8.95e-11,92;UBERON:0002021,2.20e-10,10;UBERON:0000411,2.20e-10,10;UBERON:0001950,2.20e-10,10;UBERON:0003076,2.92e-08,12;UBERON:0003057,2.92e-08,12|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.10259740906419,0.0992909512008853,0,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.14024590558481,2.43304634926835,1.10128051297009,2.34717403304412,16.7879370412944,14.7189742432096,12.2490836416799,12.3188051030319,21.5628846547457,0,0,0,0.771778308107841,0.85960031981627,0.515672092277442,7.89034197352431,8.46385566835253,7.60597684207415,4.40497891689872,6.22506357277798,0.449949858640699,0,0,17.9760066311043,24.5899715405795,10.2652716185393,10.6654691282036,9.25429829946081,11.9973413449598,11.2642955885323,8.69684674426174,8.62609239164127,3.67687514644008,11.0115880999389,12.1302971180928,11.366883460962,12.3973110466382,9.88066550906024,8.85552729946492,7.81712397203867,11.2552522006336,10.0846843532695,13.8475435172624,11.6744778255264,8.01517617048792,3.63485727999283,4.23200736597999,0,0,0,0,0,0,1.68533304158102,7.15807354827843,6.49465011507172,8.48014978824817,0.281686839553361,11.5493829672886,38.2207859559969,28.4426681261332,0.216491041011214,0,1.01104889002957,0.68510327831436,0.517875767294343,0.445326417194474,0.346970653532272,1.21786191324856,0.691846491768175,0.452167921657868,0.940709657085638,0,0.247194967734374,0.433798070759735,0,0.161766849947409,0,0,0,11.1256702864388,9.63454851341893,0.255457055208591,0,0,0,15.5782264981016,45.292559679044,8.54449594367478,41.0225395653772,42.9601968314955,18.0775598766817,26.9320496692478,0.203678727700633,0,0,2.31486041475121,0,0.689706313300419,0.540186389416048,1.20563854268572,0.95251098811859,0.896796041993948,1.3118241438362,2.84573707812917,0,0,0,0,1.39023624612799,7.3132954969655,9.67176041117334,0.398068533636986,0,0,0,0.207125772535502,0.234526059981096,0.180062061461015,0,0,0,0,0,0,0,0,0.0810688095458557,0.146199987425332,0,0.134206418760372,22.921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| ||
|EntrezGene=58175 | |||
|HGNC= | |||
|MCL_coexpression_id=2 | |||
|UniProt=E9Q1A3 | |||
|association_with_transcript=0bp_to_ENSMUST00000156289,ENSMUST00000170566_5end | |||
|description=CAGE_peak_1_at_Rgs20_5end | |||
|id=chr1:5009423..5009478,- | |||
|ontology_enrichment_celltype=CL:0002319!6.00e-15!43;CL:0000221!1.05e-14!44;CL:0000133!1.05e-14!44;CL:0000055!2.20e-14!50;CL:0000117!1.05e-11!23;CL:0000337!1.05e-11!23;CL:0000393!2.05e-10!39;CL:0000211!2.05e-10!39;CL:0000540!3.60e-10!33;CL:0000047!3.60e-10!33;CL:0000031!3.60e-10!33;CL:0000404!3.60e-10!33;CL:0002321!4.87e-08!70;CL:0000220!4.87e-08!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.84e-14,23;CL:0000337,1.84e-14,23;CL:0002319,1.43e-13,43;CL:0000221,5.66e-13,44;CL:0000133,5.66e-13,44;CL:0000540,4.04e-08,33;CL:0000047,4.04e-08,33;CL:0000031,4.04e-08,33;CL:0000404,4.04e-08,33;CL:0002321,1.09e-07,70;CL:0000333,2.62e-07,10;CL:0000095,2.62e-07,10;CL:0000243,2.62e-07,10;CL:0000123,2.62e-07,10;CL:0000125,2.62e-07,10;CL:0000030,2.62e-07,10;CL:0000339,2.62e-07,10;CL:0000393,2.72e-07,39;CL:0000211,2.72e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!8.18e-34!102;UBERON:0000924!8.18e-34!102;UBERON:0006601!8.18e-34!102;UBERON:0000073!3.46e-31!75;UBERON:0001016!3.46e-31!75;UBERON:0001017!2.00e-30!73;UBERON:0005743!2.00e-30!73;UBERON:0001049!3.86e-25!52;UBERON:0005068!3.86e-25!52;UBERON:0006241!3.86e-25!52;UBERON:0007135!3.86e-25!52;UBERON:0000955!3.90e-24!50;UBERON:0006238!3.90e-24!50;UBERON:0002616!1.95e-23!49;UBERON:0000033!2.96e-23!63;UBERON:0002346!5.70e-23!71;UBERON:0003075!5.70e-23!71;UBERON:0007284!5.70e-23!71;UBERON:0002020!1.39e-20!34;UBERON:0003080!6.94e-19!40;UBERON:0002780!2.98e-18!39;UBERON:0001890!2.98e-18!39;UBERON:0006240!2.98e-18!39;UBERON:0003056!4.91e-18!49;UBERON:0002791!6.90e-18!29;UBERON:0003528!6.90e-18!29;UBERON:0001893!6.90e-18!29;UBERON:0007811!2.34e-14!86;UBERON:0000956!7.10e-14!21;UBERON:0001869!7.10e-14!21;UBERON:0000203!7.10e-14!21;UBERON:0000153!2.66e-13!94;UBERON:0002619!8.55e-12!17;UBERON:0002021!1.70e-08!10;UBERON:0000411!1.70e-08!10;UBERON:0001950!1.70e-08!10;UBERON:0003076!8.02e-07!12;UBERON:0003057!8.02e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.00e-30,95;UBERON:0000924,1.00e-30,95;UBERON:0006601,1.00e-30,95;UBERON:0001016,1.77e-29,75;UBERON:0000073,5.34e-29,54;UBERON:0001017,1.50e-28,73;UBERON:0001049,1.75e-27,52;UBERON:0005068,1.75e-27,52;UBERON:0006241,1.75e-27,52;UBERON:0007135,1.75e-27,52;UBERON:0002020,9.00e-26,34;UBERON:0010371,2.10e-24,73;UBERON:0000955,4.62e-24,47;UBERON:0006238,4.62e-24,47;UBERON:0002616,3.20e-23,46;UBERON:0003528,2.46e-22,29;UBERON:0002791,2.46e-22,29;UBERON:0001893,2.46e-22,29;UBERON:0002346,5.51e-22,64;UBERON:0003075,5.51e-22,64;UBERON:0007284,5.51e-22,64;UBERON:0003080,1.02e-19,40;UBERON:0002780,6.08e-19,39;UBERON:0001890,6.08e-19,39;UBERON:0006240,6.08e-19,39;UBERON:0000956,3.17e-17,21;UBERON:0001869,3.17e-17,21;UBERON:0000203,3.17e-17,21;UBERON:0003056,1.31e-16,49;UBERON:0002619,1.41e-14,17;UBERON:0010314,8.95e-11,92;UBERON:0002021,2.20e-10,10;UBERON:0000411,2.20e-10,10;UBERON:0001950,2.20e-10,10;UBERON:0003076,2.92e-08,12;UBERON:0003057,2.92e-08,12 | |||
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|short_description=p1@Rgs20 | |||
}} |
Revision as of 20:28, 13 September 2013
Short description: | p1@Rgs20 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rgs20_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | 0bp_to_ENSMUST00000156289, ENSMUST00000170566_5end |
EntrezGene: | Rgs20 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.84e-14 | 23 |
neuroblast (sensu Vertebrata) | 1.84e-14 | 23 |
neural cell | 1.43e-13 | 43 |
ectodermal cell | 5.66e-13 | 44 |
neurectodermal cell | 5.66e-13 | 44 |
neuron | 4.04e-08 | 33 |
neuronal stem cell | 4.04e-08 | 33 |
neuroblast | 4.04e-08 | 33 |
electrically signaling cell | 4.04e-08 | 33 |
embryonic cell | 1.09e-07 | 70 |
migratory neural crest cell | 2.62e-07 | 10 |
neuron associated cell | 2.62e-07 | 10 |
glial cell (sensu Vertebrata) | 2.62e-07 | 10 |
neuron associated cell (sensu Vertebrata) | 2.62e-07 | 10 |
glial cell | 2.62e-07 | 10 |
glioblast | 2.62e-07 | 10 |
glioblast (sensu Vertebrata) | 2.62e-07 | 10 |
electrically responsive cell | 2.72e-07 | 39 |
electrically active cell | 2.72e-07 | 39 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.