FFCP PHASE1:Hg19::chr1:28261533..28261564,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=27293|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=21416|TSSclassifier=S|UniProt=Q5T0Y8,F8VXS3|association_with_transcript=0bp_to_ENST00000373888,ENST00000411604,ENST00000548116_5end|description=CAGE_peak_1_at_SMPDL3B_5end|id=chr1:28261533..28261564,+|ontology_enrichment_celltype=CL:0000066!8.31e-29!254;CL:0002076!3.97e-09!43;CL:0000223!9.18e-09!59|ontology_enrichment_celltype_v019=CL:1000507;1.03e-11;10!CL:1000494;1.03e-11;10!CL:1000497;7.41e-10;17!CL:0002518;7.41e-10;17!CL:1000449;1.57e-08;15!CL:0002322;1.20e-07;5!CL:0002076;1.44e-07;42|ontology_enrichment_celltype_v019_2=CL:0000066,1.71e-28,253;CL:1000507,1.20e-11,10;CL:1000494,1.20e-11,10;CL:1000497,7.59e-10,17;CL:0002518,7.59e-10,17;CL:0002076,1.06e-09,42;CL:1000449,1.73e-08,15;CL:0000223,6.34e-08,58;CL:0002322,1.24e-07,5|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:305!1.18e-32!106;DOID:0050687!5.74e-28!143;DOID:162!6.23e-24!235;DOID:14566!2.28e-22!239;DOID:299!1.13e-11!25;DOID:0050686!5.28e-08!137|ontology_enrichment_disease_v019=DOID:299;1.35e-16;25!DOID:305;9.63e-10;106|ontology_enrichment_disease_v019_2=DOID:305,6.22e-31,106;DOID:0050687,8.16e-23,143;DOID:299,9.10e-17,25;DOID:162,1.02e-16,235;DOID:14566,8.08e-16,239;DOID:0050686,1.71e-08,137;DOID:3119,8.95e-07,14|ontology_enrichment_uberon=UBERON:0004119!6.31e-15!169;UBERON:0000925!6.31e-15!169;UBERON:0006595!6.31e-15!169;UBERON:0001007!1.80e-14!155;UBERON:0001555!1.80e-14!155;UBERON:0007026!1.80e-14!155;UBERON:0004921!3.44e-14!129;UBERON:0004185!3.44e-14!129;UBERON:0000077!7.27e-11!130;UBERON:0000464!3.70e-10!104;UBERON:0008947!6.53e-10!38;UBERON:0003258!6.53e-10!38;UBERON:0005911!7.03e-10!82;UBERON:0001041!1.01e-09!98;UBERON:0005153!1.38e-09!37;UBERON:0000065!1.72e-09!53;UBERON:0000466!1.74e-09!126;UBERON:0001004!2.43e-09!72;UBERON:0005177!4.37e-09!107;UBERON:0002048!4.79e-08!22;UBERON:0000117!4.79e-08!22;UBERON:0000171!4.79e-08!22;UBERON:0000170!4.79e-08!22;UBERON:0005597!4.79e-08!22;UBERON:0000118!4.79e-08!22;UBERON:0005157!8.95e-08!51;UBERON:0005178!1.39e-07!34;UBERON:0002224!1.39e-07!34;UBERON:0000063!2.97e-07!97;UBERON:0000072!3.00e-07!46;UBERON:0009569!4.03e-07!113;UBERON:0005181!4.09e-07!35|ontology_enrichment_uberon_v019=UBERON:0005409;7.85e-13;22!UBERON:0004921;2.23e-12;33!UBERON:0004211;1.03e-11;10!UBERON:0009773;1.03e-11;10!UBERON:0001231;1.03e-11;10!UBERON:0004810;1.03e-11;10!UBERON:0006554;7.53e-11;30!UBERON:0001008;7.53e-11;30!UBERON:0002113;1.35e-10;24!UBERON:0011143;1.35e-10;24!UBERON:0000489;4.16e-09;29!UBERON:0000160;8.97e-09;17!UBERON:0006555;1.57e-08;15!UBERON:0004819;1.57e-08;15!UBERON:0001285;1.57e-08;15!UBERON:0007684;1.57e-08;15!UBERON:0002048;3.34e-08;22!UBERON:0000117;3.34e-08;22!UBERON:0000171;3.34e-08;22!UBERON:0000170;3.34e-08;22!UBERON:0005911;3.44e-07;36|ontology_enrichment_uberon_v019_2=UBERON:0005177,5.28e-13,101;UBERON:0004119,4.24e-12,160;UBERON:0000925,4.24e-12,160;UBERON:0006595,4.24e-12,160;UBERON:0001007,5.08e-12,145;UBERON:0001555,5.08e-12,145;UBERON:0007026,5.08e-12,145;UBERON:0004921,7.82e-12,118;UBERON:0004810,1.20e-11,10;UBERON:0005153,5.16e-11,37;UBERON:0005409,6.64e-11,25;UBERON:0006554,7.36e-11,47;UBERON:0002113,9.23e-11,26;UBERON:0003918,9.23e-11,26;UBERON:0011143,9.23e-11,26;UBERON:0005095,9.23e-11,26;UBERON:0007687,9.23e-11,26;UBERON:0001008,1.84e-10,48;UBERON:0009569,3.53e-10,112;UBERON:0005911,8.36e-10,82;UBERON:0000489,2.39e-09,31;UBERON:0006555,2.59e-09,16;UBERON:0004819,2.59e-09,16;UBERON:0000160,6.23e-09,17;UBERON:0005157,7.88e-09,47;UBERON:0004211,1.73e-08,15;UBERON:0009773,1.73e-08,15;UBERON:0001231,1.73e-08,15;UBERON:0001285,1.73e-08,15;UBERON:0007684,1.73e-08,15;UBERON:0004208,1.73e-08,15;UBERON:0002048,3.39e-08,22;UBERON:0000117,3.39e-08,22;UBERON:0000171,3.39e-08,22;UBERON:0000170,3.39e-08,22;UBERON:0005597,3.39e-08,22;UBERON:0000118,3.39e-08,22;UBERON:0005178,1.00e-07,34;UBERON:0002224,1.00e-07,34;UBERON:0005181,2.36e-07,35|phase1_expression=0,0,0,0,0,0,0,0,0,4.17747692052565,11.8626198555313,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0,0,0.152826811495903,0,0.0787107813136792,0.393364276848904,0,0,1.83884244895785,0.6024118375565,0,0.774672005803016,1.13735385989937,1.17440175733939,0,0,0,0.223915474239924,0,0,0.436194716338694,0,0,0,0,0,0.575384784644301,1.0246428261164,0.709446689665756,0.344745680736619,0,0,0,0,0,0,0,0,0.329851300186716,0.199463657621632,0.852449501065388,0,0,0,0.251248665256743,0,0,0,0,0.316462387440884,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0.665188192387692,0.263504357079378,1.76821751921912,2.18577172975525,2.22470665670658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0.535798369704479,0.44905874525234,0,0,0,0,1.31780417436063,0,2.61656431285521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773043412653187,1.36373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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=27293 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21416 | |||
|TSSclassifier=S | |||
|UniProt=Q5T0Y8,F8VXS3 | |||
|association_with_transcript=0bp_to_ENST00000373888,ENST00000411604,ENST00000548116_5end | |||
|description=CAGE_peak_1_at_SMPDL3B_5end | |||
|id=chr1:28261533..28261564,+ | |||
|ontology_enrichment_celltype=CL:0000066!8.31e-29!254;CL:0002076!3.97e-09!43;CL:0000223!9.18e-09!59 | |||
|ontology_enrichment_celltype_v019=CL:1000507;1.03e-11;10!CL:1000494;1.03e-11;10!CL:1000497;7.41e-10;17!CL:0002518;7.41e-10;17!CL:1000449;1.57e-08;15!CL:0002322;1.20e-07;5!CL:0002076;1.44e-07;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.71e-28,253;CL:1000507,1.20e-11,10;CL:1000494,1.20e-11,10;CL:1000497,7.59e-10,17;CL:0002518,7.59e-10,17;CL:0002076,1.06e-09,42;CL:1000449,1.73e-08,15;CL:0000223,6.34e-08,58;CL:0002322,1.24e-07,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!1.18e-32!106;DOID:0050687!5.74e-28!143;DOID:162!6.23e-24!235;DOID:14566!2.28e-22!239;DOID:299!1.13e-11!25;DOID:0050686!5.28e-08!137 | |||
|ontology_enrichment_disease_v019=DOID:299;1.35e-16;25!DOID:305;9.63e-10;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,6.22e-31,106;DOID:0050687,8.16e-23,143;DOID:299,9.10e-17,25;DOID:162,1.02e-16,235;DOID:14566,8.08e-16,239;DOID:0050686,1.71e-08,137;DOID:3119,8.95e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!6.31e-15!169;UBERON:0000925!6.31e-15!169;UBERON:0006595!6.31e-15!169;UBERON:0001007!1.80e-14!155;UBERON:0001555!1.80e-14!155;UBERON:0007026!1.80e-14!155;UBERON:0004921!3.44e-14!129;UBERON:0004185!3.44e-14!129;UBERON:0000077!7.27e-11!130;UBERON:0000464!3.70e-10!104;UBERON:0008947!6.53e-10!38;UBERON:0003258!6.53e-10!38;UBERON:0005911!7.03e-10!82;UBERON:0001041!1.01e-09!98;UBERON:0005153!1.38e-09!37;UBERON:0000065!1.72e-09!53;UBERON:0000466!1.74e-09!126;UBERON:0001004!2.43e-09!72;UBERON:0005177!4.37e-09!107;UBERON:0002048!4.79e-08!22;UBERON:0000117!4.79e-08!22;UBERON:0000171!4.79e-08!22;UBERON:0000170!4.79e-08!22;UBERON:0005597!4.79e-08!22;UBERON:0000118!4.79e-08!22;UBERON:0005157!8.95e-08!51;UBERON:0005178!1.39e-07!34;UBERON:0002224!1.39e-07!34;UBERON:0000063!2.97e-07!97;UBERON:0000072!3.00e-07!46;UBERON:0009569!4.03e-07!113;UBERON:0005181!4.09e-07!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;7.85e-13;22!UBERON:0004921;2.23e-12;33!UBERON:0004211;1.03e-11;10!UBERON:0009773;1.03e-11;10!UBERON:0001231;1.03e-11;10!UBERON:0004810;1.03e-11;10!UBERON:0006554;7.53e-11;30!UBERON:0001008;7.53e-11;30!UBERON:0002113;1.35e-10;24!UBERON:0011143;1.35e-10;24!UBERON:0000489;4.16e-09;29!UBERON:0000160;8.97e-09;17!UBERON:0006555;1.57e-08;15!UBERON:0004819;1.57e-08;15!UBERON:0001285;1.57e-08;15!UBERON:0007684;1.57e-08;15!UBERON:0002048;3.34e-08;22!UBERON:0000117;3.34e-08;22!UBERON:0000171;3.34e-08;22!UBERON:0000170;3.34e-08;22!UBERON:0005911;3.44e-07;36 | |||
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| |||
|short_description=p1@SMPDL3B | |||
}} |
Revision as of 05:06, 12 September 2013
Short description: | p1@SMPDL3B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_SMPDL3B_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000373888, ENST00000411604, ENST00000548116_5end |
EntrezGene: | SMPDL3B |
HGNC: | 21416 |
UniProt: | Q5T0Y8F8VXS3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.71e-28 | 253 |
kidney tubule cell | 1.20e-11 | 10 |
nephron tubule epithelial cell | 1.20e-11 | 10 |
kidney cell | 7.59e-10 | 17 |
kidney epithelial cell | 7.59e-10 | 17 |
endo-epithelial cell | 1.06e-09 | 42 |
epithelial cell of nephron | 1.73e-08 | 15 |
endodermal cell | 6.34e-08 | 58 |
embryonic stem cell | 1.24e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 6.22e-31 | 106 |
cell type cancer | 8.16e-23 | 143 |
adenocarcinoma | 9.10e-17 | 25 |
cancer | 1.02e-16 | 235 |
disease of cellular proliferation | 8.08e-16 | 239 |
organ system cancer | 1.71e-08 | 137 |
gastrointestinal system cancer | 8.95e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.