FFCP PHASE1:Hg19::chr20:1306354..1306367,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=27111|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=15756|TSSclassifier=S|UniProt=Q9H190|association_with_transcript=-3bp_to_ENST00000381812_5end|coexpression_cluster_id=C0|description=CAGE_peak_5_at_SDCBP2_5end|id=chr20:1306354..1306367,-|ontology_enrichment_celltype=CL:0002057!1.01e-43!42;CL:0000860!1.00e-39!45;CL:0000557!7.59e-28!71;CL:0000738!5.50e-27!140;CL:0000766!6.50e-27!76;CL:0002009!2.02e-26!65;CL:0002194!8.05e-25!63;CL:0000576!8.05e-25!63;CL:0000040!8.05e-25!63;CL:0000559!8.05e-25!63;CL:0000839!3.43e-24!70;CL:0002087!6.05e-24!119;CL:0002031!1.46e-23!124;CL:0000037!2.19e-19!172;CL:0000566!2.19e-19!172;CL:0000988!8.90e-18!182;CL:0002032!8.36e-17!165;CL:0000837!8.36e-17!165;CL:0000763!1.19e-15!112;CL:0000049!1.19e-15!112;CL:0000134!3.40e-11!358;CL:0002320!6.26e-11!365;CL:0000034!2.45e-10!444;CL:0000723!4.73e-10!436;CL:0000048!8.73e-10!430;CL:0000219!1.18e-08!390;CL:0000624!3.22e-08!6;CL:0002393!2.31e-07!9;CL:0002397!2.31e-07!9|ontology_enrichment_celltype_v019=CL:0000860;2.06e-47;33!CL:0002057;2.06e-47;33!CL:0000473;1.40e-33;39!CL:0000234;1.40e-33;39!CL:0000576;1.01e-25;48!CL:0000766;7.24e-17;69!CL:0002087;1.86e-15;104!CL:0000624;1.60e-12;6!CL:0000898;1.11e-09;3!CL:0000767;1.63e-09;3!CL:0000791;2.20e-09;18!CL:0000789;2.20e-09;18!CL:0002419;2.20e-09;18!CL:0000623;3.28e-09;3!CL:0000763;4.57e-09;100!CL:0000738;6.24e-09;136!CL:0000815;5.92e-07;2!CL:0000792;5.92e-07;2!CL:0002677;5.92e-07;2|ontology_enrichment_celltype_v019_2=CL:0000860,4.08e-51,42;CL:0002057,4.08e-51,42;CL:0000473,1.01e-43,48;CL:0000234,1.01e-43,48;CL:0000738,1.15e-43,136;CL:0002087,6.86e-40,115;CL:0000766,1.26e-37,72;CL:0002009,4.88e-37,61;CL:0000037,2.94e-36,168;CL:0002194,6.90e-36,59;CL:0000576,6.90e-36,59;CL:0000040,6.90e-36,59;CL:0000559,6.90e-36,59;CL:0002031,8.62e-36,120;CL:0000557,2.19e-35,67;CL:0000988,8.92e-34,177;CL:0002032,1.39e-31,161;CL:0000837,1.39e-31,161;CL:0000839,2.75e-31,66;CL:0000763,2.14e-25,108;CL:0000049,2.14e-25,108;CL:0000134,3.55e-18,354;CL:0002320,1.49e-17,361;CL:0000034,8.30e-16,441;CL:0000219,2.30e-15,386;CL:0000723,1.41e-14,433;CL:0000048,3.37e-14,427;CL:0000624,1.97e-12,6;CL:0000767,1.06e-09,3;CL:0000898,1.31e-09,3;CL:0000791,2.88e-09,18;CL:0000789,2.88e-09,18;CL:0002420,2.88e-09,18;CL:0002419,2.88e-09,18;CL:0000790,2.88e-09,18;CL:0000623,3.86e-09,3;CL:0000825,3.86e-09,3;CL:0000815,7.76e-07,2;CL:0000792,7.76e-07,2;CL:0002677,7.76e-07,2|ontology_enrichment_development_v019=CL:0002057;1.75e-37;42!CL:0000790;2.20e-09;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!3.10e-28!80;UBERON:0001474!2.11e-26!86;UBERON:0002390!6.32e-24!102;UBERON:0003061!6.32e-24!102;UBERON:0002193!4.36e-22!112;UBERON:0004765!6.40e-21!101;UBERON:0001434!6.40e-21!101;UBERON:0002405!2.28e-20!115;UBERON:0002204!4.94e-13!167;UBERON:0003081!7.72e-13!216;UBERON:0002384!2.77e-10!375|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.13e-34,76;UBERON:0001474,1.14e-33,82;UBERON:0002390,1.46e-30,98;UBERON:0003061,1.46e-30,98;UBERON:0004765,6.81e-30,90;UBERON:0002405,9.76e-29,93;UBERON:0002193,7.20e-27,108;UBERON:0001434,5.08e-26,100;UBERON:0002384,1.05e-16,371;UBERON:0002204,5.21e-14,167;UBERON:0003081,1.70e-13,203|phase1_expression=0.181678379270557,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0.662794751455832,0,0,0,0,0,0,0,0,0,0,0,0,0.0787107813136792,2.75354993794233,2.68680578668049,1.54816123316076,0,0,0,0,0,1.46800219667424,2.76997704265939,1.60435557976113,1.95309783644267,0,0,0,0.145398238779565,0.377875943688809,0.485168122375632,1.16214518452842,0.822335776043652,4.02618282163635,4.60307827715441,4.09857130446561,13.9524515634265,2.75796544589295,7.74581620300591,8.12558919566051,2.07066573496865,0.818718450173537,3.14612878223118,9.18251677112708,6.41858054152187,14.0654167675789,1.9791078011203,2.39356389145958,2.98357325372886,4.35313857942876,1.13477044938228,3.11411124497787,1.50749199154046,3.65038042894141,9.1219314776149,1.81619850790011,1.84138817993782,7.27863491114034,0.211255286311942,0.425208599930087,0.209658645508376,0.336985893439485,0.300353785683013,0.16072558669708,0.285012743741249,0.39783335439818,0,0,0,0,0,0,0,0,0,0,3.52342313622563,1.91136614062614,2.64342657158052,3.92355994087075,0,0.590129310341499,2.35806457649499,2.2616164889946,0.167186495390678,3.58514493296949,0,1.94826728407911,0,1.17842362989935,0.221533894583621,0,0.128091319725675,0,0,0,0,0.444859689486181,0.267540828089713,0,0,2.68254345521345,0,0.506039384039006,0,0,0,0,0,0,0,0,2.01606743224732,2.13952156626806,1.44824403882799,0,0,0.12786256184353,0.361439152384566,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,1.19245312152671,2.28797964312051,0,0,0,0,0,0.419499436209906,0,0.417989933073621,0.516833518338658,0,0,0,0.760272105718513,0,0,0.81014194788176,0,0,0,1.53316637465883,0,0,3.9534125230819,0,0,0,0,2.1185468930115,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14944868055180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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=27111 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15756 | |||
|TSSclassifier=S | |||
|UniProt=Q9H190 | |||
|association_with_transcript=-3bp_to_ENST00000381812_5end | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_5_at_SDCBP2_5end | |||
|id=chr20:1306354..1306367,- | |||
|ontology_enrichment_celltype=CL:0002057!1.01e-43!42;CL:0000860!1.00e-39!45;CL:0000557!7.59e-28!71;CL:0000738!5.50e-27!140;CL:0000766!6.50e-27!76;CL:0002009!2.02e-26!65;CL:0002194!8.05e-25!63;CL:0000576!8.05e-25!63;CL:0000040!8.05e-25!63;CL:0000559!8.05e-25!63;CL:0000839!3.43e-24!70;CL:0002087!6.05e-24!119;CL:0002031!1.46e-23!124;CL:0000037!2.19e-19!172;CL:0000566!2.19e-19!172;CL:0000988!8.90e-18!182;CL:0002032!8.36e-17!165;CL:0000837!8.36e-17!165;CL:0000763!1.19e-15!112;CL:0000049!1.19e-15!112;CL:0000134!3.40e-11!358;CL:0002320!6.26e-11!365;CL:0000034!2.45e-10!444;CL:0000723!4.73e-10!436;CL:0000048!8.73e-10!430;CL:0000219!1.18e-08!390;CL:0000624!3.22e-08!6;CL:0002393!2.31e-07!9;CL:0002397!2.31e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.06e-47;33!CL:0002057;2.06e-47;33!CL:0000473;1.40e-33;39!CL:0000234;1.40e-33;39!CL:0000576;1.01e-25;48!CL:0000766;7.24e-17;69!CL:0002087;1.86e-15;104!CL:0000624;1.60e-12;6!CL:0000898;1.11e-09;3!CL:0000767;1.63e-09;3!CL:0000791;2.20e-09;18!CL:0000789;2.20e-09;18!CL:0002419;2.20e-09;18!CL:0000623;3.28e-09;3!CL:0000763;4.57e-09;100!CL:0000738;6.24e-09;136!CL:0000815;5.92e-07;2!CL:0000792;5.92e-07;2!CL:0002677;5.92e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.08e-51,42;CL:0002057,4.08e-51,42;CL:0000473,1.01e-43,48;CL:0000234,1.01e-43,48;CL:0000738,1.15e-43,136;CL:0002087,6.86e-40,115;CL:0000766,1.26e-37,72;CL:0002009,4.88e-37,61;CL:0000037,2.94e-36,168;CL:0002194,6.90e-36,59;CL:0000576,6.90e-36,59;CL:0000040,6.90e-36,59;CL:0000559,6.90e-36,59;CL:0002031,8.62e-36,120;CL:0000557,2.19e-35,67;CL:0000988,8.92e-34,177;CL:0002032,1.39e-31,161;CL:0000837,1.39e-31,161;CL:0000839,2.75e-31,66;CL:0000763,2.14e-25,108;CL:0000049,2.14e-25,108;CL:0000134,3.55e-18,354;CL:0002320,1.49e-17,361;CL:0000034,8.30e-16,441;CL:0000219,2.30e-15,386;CL:0000723,1.41e-14,433;CL:0000048,3.37e-14,427;CL:0000624,1.97e-12,6;CL:0000767,1.06e-09,3;CL:0000898,1.31e-09,3;CL:0000791,2.88e-09,18;CL:0000789,2.88e-09,18;CL:0002420,2.88e-09,18;CL:0002419,2.88e-09,18;CL:0000790,2.88e-09,18;CL:0000623,3.86e-09,3;CL:0000825,3.86e-09,3;CL:0000815,7.76e-07,2;CL:0000792,7.76e-07,2;CL:0002677,7.76e-07,2 | |||
|ontology_enrichment_development_v019=CL:0002057;1.75e-37;42!CL:0000790;2.20e-09;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!3.10e-28!80;UBERON:0001474!2.11e-26!86;UBERON:0002390!6.32e-24!102;UBERON:0003061!6.32e-24!102;UBERON:0002193!4.36e-22!112;UBERON:0004765!6.40e-21!101;UBERON:0001434!6.40e-21!101;UBERON:0002405!2.28e-20!115;UBERON:0002204!4.94e-13!167;UBERON:0003081!7.72e-13!216;UBERON:0002384!2.77e-10!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.13e-34,76;UBERON:0001474,1.14e-33,82;UBERON:0002390,1.46e-30,98;UBERON:0003061,1.46e-30,98;UBERON:0004765,6.81e-30,90;UBERON:0002405,9.76e-29,93;UBERON:0002193,7.20e-27,108;UBERON:0001434,5.08e-26,100;UBERON:0002384,1.05e-16,371;UBERON:0002204,5.21e-14,167;UBERON:0003081,1.70e-13,203 | |||
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|short_description=p5@SDCBP2 | |||
}} |
Revision as of 07:31, 12 September 2013
Short description: | p5@SDCBP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_SDCBP2_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | -3bp_to_ENST00000381812_5end |
EntrezGene: | SDCBP2 |
HGNC: | 15756 |
UniProt: | Q9H190 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.13e-34 | 76 |
bone element | 1.14e-33 | 82 |
hematopoietic system | 1.46e-30 | 98 |
blood island | 1.46e-30 | 98 |
skeletal element | 6.81e-30 | 90 |
immune system | 9.76e-29 | 93 |
hemolymphoid system | 7.20e-27 | 108 |
skeletal system | 5.08e-26 | 100 |
connective tissue | 1.05e-16 | 371 |
musculoskeletal system | 5.21e-14 | 167 |
lateral plate mesoderm | 1.70e-13 | 203 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.